Odoribacter splanchnicus (strain ATCC 29572 / DSM 20712 / CIP 104287 / JCM 15291 / NCTC 10825 / 1651/6) (Bacteroides splanchnicus)

Taxonomy: cellular organisms; Bacteria; FCB group; Bacteroidetes/Chlorobi group; Bacteroidetes; Bacteroidia; Bacteroidales; Odoribacteraceae; Odoribacter; Odoribacter splanchnicus

Average proteome isoelectric point is 6.48

Get precalculated fractions of proteins

Acidic
pI < 6.8
6.8-7.4
pI > 7.4
Basic
    
All



Virtual 2D-PAGE plot for 3479 proteins (isoelectric point calculated using IPC2_protein)

Get csv file with sequences according to given criteria:
        -     Method 

     -  kDa    
                                                                                      

* You can choose from 21 different methods for calculating isoelectric point

Summary statistics related to proteome-wise predictions


    
Protein with the lowest isoelectric point:
>tr|F9Z6V0|F9Z6V0_ODOSD HipA domain protein OS=Odoribacter splanchnicus (strain ATCC 29572 / DSM 20712 / CIP 104287 / JCM 15291 / NCTC 10825 / 1651/6) OX=709991 GN=Odosp_1810 PE=3 SV=1
MM1 pKa = 7.39FLNANVCNYY10 pKa = 10.46DD11 pKa = 3.51GEE13 pKa = 4.45DD14 pKa = 3.66DD15 pKa = 3.75RR16 pKa = 11.84WICVEE21 pKa = 3.83AVTDD25 pKa = 3.78RR26 pKa = 11.84DD27 pKa = 3.81EE28 pKa = 4.58YY29 pKa = 11.21EE30 pKa = 4.13STKK33 pKa = 9.88FTII36 pKa = 4.21

Molecular weight: 4.26 kDa
Isoelectric point according different methods:





Protein with the highest isoelectric point:
>tr|F9ZB08|F9ZB08_ODOSD 30S ribosomal protein S3 OS=Odoribacter splanchnicus (strain ATCC 29572 / DSM 20712 / CIP 104287 / JCM 15291 / NCTC 10825 / 1651/6) OX=709991 GN=rpsC PE=3 SV=1
MM1 pKa = 7.92DD2 pKa = 6.15RR3 pKa = 11.84DD4 pKa = 3.87TLIFIAFCVFILLLGVRR21 pKa = 11.84FWQQLRR27 pKa = 11.84EE28 pKa = 4.02RR29 pKa = 11.84TEE31 pKa = 3.59RR32 pKa = 11.84TEE34 pKa = 3.96ADD36 pKa = 3.3RR37 pKa = 11.84SIADD41 pKa = 3.59EE42 pKa = 4.39AVPLPAKK49 pKa = 9.83SRR51 pKa = 11.84RR52 pKa = 11.84RR53 pKa = 11.84YY54 pKa = 9.61FILIQVIVLGGLLIYY69 pKa = 9.49MLSWLIRR76 pKa = 11.84DD77 pKa = 4.39FKK79 pKa = 11.05GAEE82 pKa = 3.87PVLNAGFILRR92 pKa = 11.84CLIFVFTIYY101 pKa = 10.48IFISRR106 pKa = 11.84GRR108 pKa = 11.84DD109 pKa = 3.32LLRR112 pKa = 11.84QRR114 pKa = 11.84VKK116 pKa = 11.09GNKK119 pKa = 9.01KK120 pKa = 9.8KK121 pKa = 10.88

Molecular weight: 14.25 kDa
Isoelectric point according different methods:





Peptides (in silico digests for buttom-up proteomics)

Below you can find in silico digests of the whole proteome with Trypsin, Chymotrypsin, Trypsin+LysC, LysN, ArgC proteases suitable for different mass spec machines.

Try
ESI
ChTry
ESI
ArgC
ESI
LysN
ESI
TryLysC
ESI

Try
MALDI
ChTry
MALDI
ArgC
MALDI
LysN
MALDI
TryLysC
MALDI

Try
LTQ
ChTry
LTQ
ArgC
LTQ
LysN
LTQ
TryLysC
LTQ

Try
MSlow
ChTry
MSlow
ArgC
MSlow
LysN
MSlow
TryLysC
MSlow

Try
MShigh
ChTry
MShigh
ArgC
MShigh
LysN
MShigh
TryLysC
MShigh

General Statistics

Number of major isoforms

Number of additional isoforms

Number of all proteins

Number of amino acids

Min. Seq. Length

Max. Seq. Length

Avg. Seq. Length

Avg. Mol. Weight

3479

0

3479

1258135

30

2242

361.6

40.94

Amino acid frequency

Ala

Cys

Asp

Glu

Phe

Gly

His

Ile

Lys

Leu

6.833 ± 0.041

1.234 ± 0.015

5.392 ± 0.028

6.842 ± 0.04

4.699 ± 0.029

6.879 ± 0.037

1.78 ± 0.016

7.057 ± 0.033

6.587 ± 0.036

9.446 ± 0.043

Met

Asn

Gln

Pro

Arg

Ser

Thr

Val

Trp

Tyr

2.592 ± 0.017

4.872 ± 0.031

3.685 ± 0.023

3.534 ± 0.022

4.977 ± 0.032

5.811 ± 0.032

5.474 ± 0.035

6.567 ± 0.034

1.246 ± 0.014

4.493 ± 0.025
Note: For amino acid frequency statistics the error has been estimated with the bootstraping (x100) at the protein level

Most of the basic statistics you can see at this page can be downloaded from this CSV file

For dipeptide frequency statistics click here
See this proteome in: uniprot_link
Proteome-pI is available under Creative Commons Attribution-NoDerivs license, for more details see here

Reference: Kozlowski LP. Proteome-pI 2.0: Proteome Isoelectric Point Database Update. Nucleic Acids Res. 2021, doi: 10.1093/nar/gkab944 Contact: Lukasz P. Kozlowski