Mesocricetibacter intestinalis

Taxonomy: cellular organisms; Bacteria; Proteobacteria; Gammaproteobacteria; Pasteurellales; Pasteurellaceae; Mesocricetibacter

Average proteome isoelectric point is 6.74

Get precalculated fractions of proteins

Acidic
pI < 6.8
6.8-7.4
pI > 7.4
Basic
    
All



Virtual 2D-PAGE plot for 1827 proteins (isoelectric point calculated using IPC2_protein)

Get csv file with sequences according to given criteria:
        -     Method 

     -  kDa    
                                                                                      

* You can choose from 21 different methods for calculating isoelectric point

Summary statistics related to proteome-wise predictions


    
Protein with the lowest isoelectric point:
>tr|A0A4R6V894|A0A4R6V894_9PAST 3-oxoacyl-[acyl-carrier-protein] synthase-1 OS=Mesocricetibacter intestinalis OX=1521930 GN=EDC45_1319 PE=3 SV=1
MM1 pKa = 7.56TDD3 pKa = 2.63IAVPLTFTDD12 pKa = 3.63AAANKK17 pKa = 8.89VKK19 pKa = 10.76ALISDD24 pKa = 4.41EE25 pKa = 4.31GNQDD29 pKa = 2.99LKK31 pKa = 11.28LRR33 pKa = 11.84VYY35 pKa = 9.2ITGGGCSGFQYY46 pKa = 11.02GFTFDD51 pKa = 3.71EE52 pKa = 4.79KK53 pKa = 11.47VNEE56 pKa = 4.16GDD58 pKa = 3.82LTVEE62 pKa = 3.97NAGVQLVIDD71 pKa = 4.36PMSLQYY77 pKa = 11.06LIGGTVDD84 pKa = 3.33YY85 pKa = 11.19TEE87 pKa = 4.43GLEE90 pKa = 4.07GSRR93 pKa = 11.84FIVNNPNATTTCGCGSSFSII113 pKa = 5.02

Molecular weight: 11.97 kDa
Isoelectric point according different methods:





Protein with the highest isoelectric point:
>tr|A0A4R6V6I1|A0A4R6V6I1_9PAST Molybdopterin-guanine dinucleotide biosynthesis protein B OS=Mesocricetibacter intestinalis OX=1521930 GN=EDC45_1944 PE=4 SV=1
MM1 pKa = 7.45KK2 pKa = 9.51RR3 pKa = 11.84TFQPSVLKK11 pKa = 10.6RR12 pKa = 11.84SRR14 pKa = 11.84THH16 pKa = 6.4GFRR19 pKa = 11.84ARR21 pKa = 11.84MATKK25 pKa = 10.4NGRR28 pKa = 11.84QVLARR33 pKa = 11.84RR34 pKa = 11.84RR35 pKa = 11.84AKK37 pKa = 10.17GRR39 pKa = 11.84KK40 pKa = 8.79KK41 pKa = 10.63LSAA44 pKa = 3.95

Molecular weight: 5.14 kDa
Isoelectric point according different methods:





Peptides (in silico digests for buttom-up proteomics)

Below you can find in silico digests of the whole proteome with Trypsin, Chymotrypsin, Trypsin+LysC, LysN, ArgC proteases suitable for different mass spec machines.

Try
ESI
ChTry
ESI
ArgC
ESI
LysN
ESI
TryLysC
ESI

Try
MALDI
ChTry
MALDI
ArgC
MALDI
LysN
MALDI
TryLysC
MALDI

Try
LTQ
ChTry
LTQ
ArgC
LTQ
LysN
LTQ
TryLysC
LTQ

Try
MSlow
ChTry
MSlow
ArgC
MSlow
LysN
MSlow
TryLysC
MSlow

Try
MShigh
ChTry
MShigh
ArgC
MShigh
LysN
MShigh
TryLysC
MShigh

General Statistics

Number of major isoforms

Number of additional isoforms

Number of all proteins

Number of amino acids

Min. Seq. Length

Max. Seq. Length

Avg. Seq. Length

Avg. Mol. Weight

1827

0

1827

598647

30

3475

327.7

36.4

Amino acid frequency

Ala

Cys

Asp

Glu

Phe

Gly

His

Ile

Lys

Leu

9.461 ± 0.107

1.139 ± 0.027

4.831 ± 0.047

6.142 ± 0.061

4.237 ± 0.054

7.192 ± 0.088

2.044 ± 0.031

6.833 ± 0.055

5.454 ± 0.044

10.952 ± 0.109

Met

Asn

Gln

Pro

Arg

Ser

Thr

Val

Trp

Tyr

2.398 ± 0.03

4.352 ± 0.073

3.951 ± 0.038

4.709 ± 0.053

5.167 ± 0.063

5.919 ± 0.063

4.666 ± 0.065

6.264 ± 0.059

1.125 ± 0.024

3.164 ± 0.036
Note: For amino acid frequency statistics the error has been estimated with the bootstraping (x100) at the protein level

Most of the basic statistics you can see at this page can be downloaded from this CSV file

For dipeptide frequency statistics click here
See this proteome in: uniprot_link
Proteome-pI is available under Creative Commons Attribution-NoDerivs license, for more details see here

Reference: Kozlowski LP. Proteome-pI 2.0: Proteome Isoelectric Point Database Update. Nucleic Acids Res. 2021, doi: 10.1093/nar/gkab944 Contact: Lukasz P. Kozlowski