Capybara microvirus Cap3_SP_264

Taxonomy: Viruses; Monodnaviria; Sangervirae; Phixviricota; Malgrandaviricetes; Petitvirales; Microviridae; unclassified Microviridae

Average proteome isoelectric point is 6.36

Get precalculated fractions of proteins

Acidic
pI < 6.8
6.8-7.4
pI > 7.4
Basic
    
All



Virtual 2D-PAGE plot for 6 proteins (isoelectric point calculated using IPC2_protein)

Get csv file with sequences according to given criteria:
        -     Method 

     -  kDa    
                                                                                      

* You can choose from 21 different methods for calculating isoelectric point

Summary statistics related to proteome-wise predictions


    
Protein with the lowest isoelectric point:
>tr|A0A4P8W5J5|A0A4P8W5J5_9VIRU Uncharacterized protein OS=Capybara microvirus Cap3_SP_264 OX=2585422 PE=4 SV=1
MM1 pKa = 7.35SKK3 pKa = 10.58KK4 pKa = 9.99EE5 pKa = 4.07AIKK8 pKa = 10.87NDD10 pKa = 3.48DD11 pKa = 3.66EE12 pKa = 4.55LRR14 pKa = 11.84VYY16 pKa = 10.77LEE18 pKa = 4.09SLTPDD23 pKa = 3.33EE24 pKa = 4.71LRR26 pKa = 11.84DD27 pKa = 3.76VKK29 pKa = 11.02SVLSYY34 pKa = 10.16QVEE37 pKa = 4.33MTKK40 pKa = 10.7SNKK43 pKa = 9.83DD44 pKa = 3.02SAANDD49 pKa = 3.44LQLFKK54 pKa = 11.29DD55 pKa = 3.41NEE57 pKa = 4.37IYY59 pKa = 10.73FKK61 pKa = 10.6IPYY64 pKa = 9.77AEE66 pKa = 4.18SLLLYY71 pKa = 7.24WTTAYY76 pKa = 10.5QSAKK80 pKa = 11.04SMLEE84 pKa = 3.66KK85 pKa = 10.58FNQFLILL92 pKa = 3.93

Molecular weight: 10.81 kDa
Isoelectric point according different methods:





Protein with the highest isoelectric point:
>tr|A0A4P8W5S2|A0A4P8W5S2_9VIRU Replication initiator protein OS=Capybara microvirus Cap3_SP_264 OX=2585422 PE=4 SV=1
MM1 pKa = 7.09HH2 pKa = 7.12QISNSRR8 pKa = 11.84LIYY11 pKa = 9.82QIKK14 pKa = 10.11KK15 pKa = 7.64YY16 pKa = 9.8NQMVHH21 pKa = 7.32RR22 pKa = 11.84INPLKK27 pKa = 10.32PYY29 pKa = 9.89QVYY32 pKa = 9.21QAPVGSSSLFVDD44 pKa = 4.04EE45 pKa = 4.93FSTYY49 pKa = 10.8EE50 pKa = 3.93EE51 pKa = 4.11ALKK54 pKa = 10.41CAKK57 pKa = 10.23SIAKK61 pKa = 9.3AWCNDD66 pKa = 3.03YY67 pKa = 9.31TLIIDD72 pKa = 3.75SQGFSTRR79 pKa = 11.84LEE81 pKa = 4.14YY82 pKa = 10.86VFPKK86 pKa = 10.68SNPLKK91 pKa = 10.69NKK93 pKa = 8.8VKK95 pKa = 10.64SYY97 pKa = 9.67VV98 pKa = 3.14

Molecular weight: 11.4 kDa
Isoelectric point according different methods:





Peptides (in silico digests for buttom-up proteomics)

Below you can find in silico digests of the whole proteome with Trypsin, Chymotrypsin, Trypsin+LysC, LysN, ArgC proteases suitable for different mass spec machines.

Try
ESI
ChTry
ESI
ArgC
ESI
LysN
ESI
TryLysC
ESI

Try
MALDI
ChTry
MALDI
ArgC
MALDI
LysN
MALDI
TryLysC
MALDI

Try
LTQ
ChTry
LTQ
ArgC
LTQ
LysN
LTQ
TryLysC
LTQ

Try
MSlow
ChTry
MSlow
ArgC
MSlow
LysN
MSlow
TryLysC
MSlow

Try
MShigh
ChTry
MShigh
ArgC
MShigh
LysN
MShigh
TryLysC
MShigh

General Statistics

Number of major isoforms

Number of additional isoforms

Number of all proteins

Number of amino acids

Min. Seq. Length

Max. Seq. Length

Avg. Seq. Length

Avg. Mol. Weight

6

0

6

2082

88

898

347.0

39.59

Amino acid frequency

Ala

Cys

Asp

Glu

Phe

Gly

His

Ile

Lys

Leu

5.812 ± 0.85

1.393 ± 0.474

6.532 ± 0.464

4.563 ± 0.613

6.244 ± 0.949

5.043 ± 1.068

1.969 ± 0.463

5.668 ± 0.44

5.764 ± 1.167

8.934 ± 0.774

Met

Asn

Gln

Pro

Arg

Ser

Thr

Val

Trp

Tyr

1.921 ± 0.438

7.589 ± 0.753

4.515 ± 0.436

4.995 ± 0.837

4.515 ± 0.671

9.126 ± 0.622

4.275 ± 0.518

5.139 ± 0.664

0.913 ± 0.074

5.091 ± 0.625
Note: For amino acid frequency statistics the error has been estimated with the bootstraping (x100) at the protein level

Most of the basic statistics you can see at this page can be downloaded from this CSV file

For dipeptide frequency statistics click here
See this proteome in: uniprot_link
Proteome-pI is available under Creative Commons Attribution-NoDerivs license, for more details see here

Reference: Kozlowski LP. Proteome-pI 2.0: Proteome Isoelectric Point Database Update. Nucleic Acids Res. 2021, doi: 10.1093/nar/gkab944 Contact: Lukasz P. Kozlowski