Erethizon dorsatum papillomavirus 2

Taxonomy: Viruses; Monodnaviria; Shotokuvirae; Cossaviricota; Papovaviricetes; Zurhausenvirales; Papillomaviridae; unclassified Papillomaviridae; non-primate mammal papillomaviruses

Average proteome isoelectric point is 5.84

Get precalculated fractions of proteins

Acidic
pI < 6.8
6.8-7.4
pI > 7.4
Basic
    
All



Virtual 2D-PAGE plot for 7 proteins (isoelectric point calculated using IPC2_protein)

Get csv file with sequences according to given criteria:
        -     Method 

     -  kDa    
                                                                                      

* You can choose from 21 different methods for calculating isoelectric point

Summary statistics related to proteome-wise predictions


    
Protein with the lowest isoelectric point:
>tr|A0A2Z5ENG9|A0A2Z5ENG9_9PAPI Major capsid protein L1 OS=Erethizon dorsatum papillomavirus 2 OX=2268125 GN=L1 PE=3 SV=1
MM1 pKa = 6.95VAVKK5 pKa = 10.35RR6 pKa = 11.84RR7 pKa = 11.84RR8 pKa = 11.84LKK10 pKa = 10.33RR11 pKa = 11.84DD12 pKa = 3.04SPEE15 pKa = 3.92NIYY18 pKa = 10.15RR19 pKa = 11.84QCQISGNCPPDD30 pKa = 3.38VKK32 pKa = 11.17NKK34 pKa = 10.0IEE36 pKa = 4.0QNTLADD42 pKa = 5.95RR43 pKa = 11.84ILKK46 pKa = 8.59WLSSIIYY53 pKa = 10.17LGGLGIGTGRR63 pKa = 11.84GTGGSRR69 pKa = 11.84GYY71 pKa = 11.32GPINPGGRR79 pKa = 11.84VTGTGEE85 pKa = 4.22VVHH88 pKa = 6.28PAIPVDD94 pKa = 4.24PIGPTDD100 pKa = 5.11IIPVDD105 pKa = 4.1PNSSSIVPLLEE116 pKa = 4.37GGPTGDD122 pKa = 4.57VPDD125 pKa = 4.7ILPGPSGGEE134 pKa = 3.97VTSGLDD140 pKa = 3.38FASVDD145 pKa = 3.35VTTSVEE151 pKa = 4.39TIAEE155 pKa = 4.07IAPTVDD161 pKa = 2.98VTVQGAGEE169 pKa = 4.12DD170 pKa = 3.4TGATVVRR177 pKa = 11.84PSTSRR182 pKa = 11.84GATSTFFNPAYY193 pKa = 9.99VSSIQPPAIAGEE205 pKa = 4.23VGGEE209 pKa = 3.77ISGLDD214 pKa = 3.46VTDD217 pKa = 4.53LSGFTAATFDD227 pKa = 3.56RR228 pKa = 11.84AGLQEE233 pKa = 4.89EE234 pKa = 4.75IEE236 pKa = 4.35LMDD239 pKa = 3.69IVDD242 pKa = 4.44LEE244 pKa = 4.6GEE246 pKa = 4.45GVFDD250 pKa = 3.75IFEE253 pKa = 4.67PPSTSTPRR261 pKa = 11.84NSLQRR266 pKa = 11.84LIGRR270 pKa = 11.84ARR272 pKa = 11.84QLYY275 pKa = 8.74NRR277 pKa = 11.84RR278 pKa = 11.84IRR280 pKa = 11.84QQPVRR285 pKa = 11.84NPLFIQRR292 pKa = 11.84PQQLVTFEE300 pKa = 4.38YY301 pKa = 10.32EE302 pKa = 3.88NPAFSDD308 pKa = 3.97PEE310 pKa = 3.75VTMIFEE316 pKa = 4.36RR317 pKa = 11.84DD318 pKa = 3.46VAEE321 pKa = 4.21VQIPPDD327 pKa = 3.87FDD329 pKa = 4.1FLDD332 pKa = 3.82VARR335 pKa = 11.84LGRR338 pKa = 11.84PYY340 pKa = 10.81LSEE343 pKa = 3.77TADD346 pKa = 3.37RR347 pKa = 11.84TVRR350 pKa = 11.84VSRR353 pKa = 11.84LGQRR357 pKa = 11.84SSLQTRR363 pKa = 11.84QGTVVGEE370 pKa = 4.14RR371 pKa = 11.84VHH373 pKa = 6.88YY374 pKa = 10.44YY375 pKa = 10.91YY376 pKa = 10.96DD377 pKa = 4.32LSPIAAVEE385 pKa = 4.17SSSEE389 pKa = 4.23SIEE392 pKa = 4.8LNTLSAAPIQEE403 pKa = 4.22GTVDD407 pKa = 3.38TSIDD411 pKa = 3.55NSSALLLDD419 pKa = 3.63VFEE422 pKa = 5.45EE423 pKa = 4.39DD424 pKa = 3.85FSNSRR429 pKa = 11.84LHH431 pKa = 6.28IPLYY435 pKa = 10.85AGTRR439 pKa = 11.84NYY441 pKa = 10.86NVLEE445 pKa = 4.17IPLVNRR451 pKa = 11.84PSLPLLDD458 pKa = 5.84DD459 pKa = 3.63SGIWHH464 pKa = 7.49LSGAPAGMAVQSSSEE479 pKa = 3.89GDD481 pKa = 3.38TTLVTVPFTSVDD493 pKa = 3.91YY494 pKa = 10.27YY495 pKa = 11.04LHH497 pKa = 6.84PSLVKK502 pKa = 9.46RR503 pKa = 11.84RR504 pKa = 11.84RR505 pKa = 11.84RR506 pKa = 11.84RR507 pKa = 11.84RR508 pKa = 11.84RR509 pKa = 11.84PFGDD513 pKa = 4.01FFF515 pKa = 6.52

Molecular weight: 55.82 kDa
Isoelectric point according different methods:





Protein with the highest isoelectric point:
>tr|A0A2Z5END3|A0A2Z5END3_9PAPI Protein E6 OS=Erethizon dorsatum papillomavirus 2 OX=2268125 GN=E6 PE=3 SV=1
MM1 pKa = 6.4QTLEE5 pKa = 3.78GRR7 pKa = 11.84YY8 pKa = 9.71NLLQEE13 pKa = 3.96QLLNLFEE20 pKa = 5.24KK21 pKa = 10.82GSSEE25 pKa = 5.41LEE27 pKa = 3.97DD28 pKa = 3.93QIQYY32 pKa = 10.22WDD34 pKa = 3.88LQRR37 pKa = 11.84QEE39 pKa = 4.78QILLHH44 pKa = 5.31YY45 pKa = 10.03ARR47 pKa = 11.84KK48 pKa = 9.51QGRR51 pKa = 11.84SHH53 pKa = 7.91IGMVTVPALSTSEE66 pKa = 4.14YY67 pKa = 8.47NAKK70 pKa = 10.18VAIKK74 pKa = 10.58VGLLLKK80 pKa = 10.6SLAKK84 pKa = 9.87SRR86 pKa = 11.84YY87 pKa = 8.37GRR89 pKa = 11.84EE90 pKa = 3.79PWSMQEE96 pKa = 3.95TSSEE100 pKa = 4.13LVLDD104 pKa = 4.47TKK106 pKa = 10.99PKK108 pKa = 10.96GLFKK112 pKa = 10.99KK113 pKa = 10.25EE114 pKa = 3.88GTHH117 pKa = 6.01VDD119 pKa = 2.59VWYY122 pKa = 10.18DD123 pKa = 3.4KK124 pKa = 11.25DD125 pKa = 3.86PEE127 pKa = 4.56NGAQYY132 pKa = 10.87VLWKK136 pKa = 10.39YY137 pKa = 10.47LYY139 pKa = 10.69KK140 pKa = 10.08DD141 pKa = 3.55TEE143 pKa = 4.43YY144 pKa = 11.39GWVKK148 pKa = 10.54LKK150 pKa = 10.92SHH152 pKa = 6.25VDD154 pKa = 3.17YY155 pKa = 11.33HH156 pKa = 6.43GIYY159 pKa = 10.64YY160 pKa = 10.17KK161 pKa = 10.91DD162 pKa = 3.39EE163 pKa = 4.25TDD165 pKa = 2.99EE166 pKa = 4.63KK167 pKa = 10.6IYY169 pKa = 9.74YY170 pKa = 9.82TSFDD174 pKa = 3.81EE175 pKa = 5.46DD176 pKa = 3.59GVRR179 pKa = 11.84YY180 pKa = 8.22STTGTWIVHH189 pKa = 5.87FQNDD193 pKa = 4.46TISSSRR199 pKa = 11.84EE200 pKa = 3.37EE201 pKa = 4.06RR202 pKa = 11.84DD203 pKa = 3.19RR204 pKa = 11.84SEE206 pKa = 4.28TTGSAGTEE214 pKa = 4.06TSRR217 pKa = 11.84SEE219 pKa = 4.19RR220 pKa = 11.84PPPPRR225 pKa = 11.84SRR227 pKa = 11.84GSAGGGGGEE236 pKa = 3.74RR237 pKa = 11.84RR238 pKa = 11.84RR239 pKa = 11.84RR240 pKa = 11.84SIEE243 pKa = 3.57QAPNPTEE250 pKa = 3.7VGQRR254 pKa = 11.84RR255 pKa = 11.84TSVPKK260 pKa = 10.63HH261 pKa = 4.85NLSRR265 pKa = 11.84LKK267 pKa = 10.55RR268 pKa = 11.84LNLEE272 pKa = 4.04ARR274 pKa = 11.84DD275 pKa = 4.0PPVLILKK282 pKa = 8.94GQANALKK289 pKa = 10.06CWRR292 pKa = 11.84HH293 pKa = 4.12RR294 pKa = 11.84QKK296 pKa = 10.83CKK298 pKa = 10.08RR299 pKa = 11.84EE300 pKa = 3.8KK301 pKa = 10.85LFVDD305 pKa = 4.14ISTTFAWSGCGVGVGAGAGARR326 pKa = 11.84KK327 pKa = 9.2NRR329 pKa = 11.84QINSRR334 pKa = 11.84LLVAFADD341 pKa = 3.87STHH344 pKa = 7.08RR345 pKa = 11.84DD346 pKa = 3.41LFLKK350 pKa = 10.28KK351 pKa = 9.98IPIPKK356 pKa = 9.85GCTYY360 pKa = 10.92DD361 pKa = 3.56YY362 pKa = 11.63GNLSSLL368 pKa = 3.91

Molecular weight: 41.99 kDa
Isoelectric point according different methods:





Peptides (in silico digests for buttom-up proteomics)

Below you can find in silico digests of the whole proteome with Trypsin, Chymotrypsin, Trypsin+LysC, LysN, ArgC proteases suitable for different mass spec machines.

Try
ESI
ChTry
ESI
ArgC
ESI
LysN
ESI
TryLysC
ESI

Try
MALDI
ChTry
MALDI
ArgC
MALDI
LysN
MALDI
TryLysC
MALDI

Try
LTQ
ChTry
LTQ
ArgC
LTQ
LysN
LTQ
TryLysC
LTQ

Try
MSlow
ChTry
MSlow
ArgC
MSlow
LysN
MSlow
TryLysC
MSlow

Try
MShigh
ChTry
MShigh
ArgC
MShigh
LysN
MShigh
TryLysC
MShigh

General Statistics

Number of major isoforms

Number of additional isoforms

Number of all proteins

Number of amino acids

Min. Seq. Length

Max. Seq. Length

Avg. Seq. Length

Avg. Mol. Weight

7

0

7

2323

86

608

331.9

37.42

Amino acid frequency

Ala

Cys

Asp

Glu

Phe

Gly

His

Ile

Lys

Leu

5.209 ± 0.48

2.109 ± 0.788

6.156 ± 0.351

6.457 ± 0.406

4.09 ± 0.589

6.974 ± 0.804

2.238 ± 0.386

4.649 ± 0.695

4.95 ± 1.025

9.643 ± 0.883

Met

Asn

Gln

Pro

Arg

Ser

Thr

Val

Trp

Tyr

1.55 ± 0.403

4.133 ± 0.477

5.639 ± 1.008

5.08 ± 0.544

6.07 ± 0.77

7.232 ± 0.583

6.07 ± 0.521

6.802 ± 0.556

1.464 ± 0.31

3.487 ± 0.335
Note: For amino acid frequency statistics the error has been estimated with the bootstraping (x100) at the protein level

Most of the basic statistics you can see at this page can be downloaded from this CSV file

For dipeptide frequency statistics click here
See this proteome in: uniprot_link
Proteome-pI is available under Creative Commons Attribution-NoDerivs license, for more details see here

Reference: Kozlowski LP. Proteome-pI 2.0: Proteome Isoelectric Point Database Update. Nucleic Acids Res. 2021, doi: 10.1093/nar/gkab944 Contact: Lukasz P. Kozlowski