Tobacco leaf curl Japan betasatellite

Taxonomy: Viruses; Tolecusatellitidae; Betasatellite

Average proteome isoelectric point is 3.98

Get precalculated fractions of proteins

Acidic
pI < 6.8
6.8-7.4
pI > 7.4
Basic
    
All



Virtual 2D-PAGE plot for 1 proteins (isoelectric point calculated using IPC2_protein)

Get csv file with sequences according to given criteria:
        -     Method 

     -  kDa    
                                                                                      

* You can choose from 21 different methods for calculating isoelectric point

Summary statistics related to proteome-wise predictions


    
Protein with the lowest isoelectric point:
>tr|A4F1V8|A4F1V8_9VIRU C1 protein OS=Tobacco leaf curl Japan betasatellite OX=2010326 GN=betaC1 PE=4 SV=1
MM1 pKa = 7.71TITYY5 pKa = 10.85SNGNGIKK12 pKa = 10.32FIIDD16 pKa = 3.05VRR18 pKa = 11.84LQQFISVSVQVYY30 pKa = 7.32STNQAILTGFNCNIPYY46 pKa = 9.53TYY48 pKa = 9.96EE49 pKa = 3.8QIIAPFDD56 pKa = 3.99FNGTEE61 pKa = 3.94EE62 pKa = 4.48IIRR65 pKa = 11.84NTLEE69 pKa = 4.58LMYY72 pKa = 10.59EE73 pKa = 4.31DD74 pKa = 4.8SDD76 pKa = 3.82VSNFQVEE83 pKa = 4.49DD84 pKa = 3.77MIEE87 pKa = 4.28TIDD90 pKa = 3.76ILMTEE95 pKa = 4.92MFTDD99 pKa = 3.6MGVEE103 pKa = 4.1TMRR106 pKa = 11.84RR107 pKa = 11.84CIVRR111 pKa = 11.84HH112 pKa = 5.93KK113 pKa = 9.99YY114 pKa = 7.98TVV116 pKa = 2.82

Molecular weight: 13.49 kDa
Isoelectric point according different methods:





Protein with the highest isoelectric point:
>tr|A4F1V8|A4F1V8_9VIRU C1 protein OS=Tobacco leaf curl Japan betasatellite OX=2010326 GN=betaC1 PE=4 SV=1
MM1 pKa = 7.71TITYY5 pKa = 10.85SNGNGIKK12 pKa = 10.32FIIDD16 pKa = 3.05VRR18 pKa = 11.84LQQFISVSVQVYY30 pKa = 7.32STNQAILTGFNCNIPYY46 pKa = 9.53TYY48 pKa = 9.96EE49 pKa = 3.8QIIAPFDD56 pKa = 3.99FNGTEE61 pKa = 3.94EE62 pKa = 4.48IIRR65 pKa = 11.84NTLEE69 pKa = 4.58LMYY72 pKa = 10.59EE73 pKa = 4.31DD74 pKa = 4.8SDD76 pKa = 3.82VSNFQVEE83 pKa = 4.49DD84 pKa = 3.77MIEE87 pKa = 4.28TIDD90 pKa = 3.76ILMTEE95 pKa = 4.92MFTDD99 pKa = 3.6MGVEE103 pKa = 4.1TMRR106 pKa = 11.84RR107 pKa = 11.84CIVRR111 pKa = 11.84HH112 pKa = 5.93KK113 pKa = 9.99YY114 pKa = 7.98TVV116 pKa = 2.82

Molecular weight: 13.49 kDa
Isoelectric point according different methods:





Peptides (in silico digests for buttom-up proteomics)

Below you can find in silico digests of the whole proteome with Trypsin, Chymotrypsin, Trypsin+LysC, LysN, ArgC proteases suitable for different mass spec machines.

Try
ESI
ChTry
ESI
ArgC
ESI
LysN
ESI
TryLysC
ESI

Try
MALDI
ChTry
MALDI
ArgC
MALDI
LysN
MALDI
TryLysC
MALDI

Try
LTQ
ChTry
LTQ
ArgC
LTQ
LysN
LTQ
TryLysC
LTQ

Try
MSlow
ChTry
MSlow
ArgC
MSlow
LysN
MSlow
TryLysC
MSlow

Try
MShigh
ChTry
MShigh
ArgC
MShigh
LysN
MShigh
TryLysC
MShigh

General Statistics

Number of major isoforms

Number of additional isoforms

Number of all proteins

Number of amino acids

Min. Seq. Length

Max. Seq. Length

Avg. Seq. Length

Avg. Mol. Weight

1

0

1

116

116

116

116.0

13.49

Amino acid frequency

Ala

Cys

Asp

Glu

Phe

Gly

His

Ile

Lys

Leu

1.724 ± 0.0

1.724 ± 0.0

6.034 ± 0.0

7.759 ± 0.0

6.034 ± 0.0

4.31 ± 0.0

0.862 ± 0.0

12.931 ± 0.0

1.724 ± 0.0

4.31 ± 0.0

Met

Asn

Gln

Pro

Arg

Ser

Thr

Val

Trp

Tyr

6.034 ± 0.0

6.897 ± 0.0

1.724 ± 0.0

5.172 ± 0.0

4.31 ± 0.0

5.172 ± 0.0

10.345 ± 0.0

7.759 ± 0.0

0.0 ± 0.0

5.172 ± 0.0
Note: For amino acid frequency statistics the error has been estimated with the bootstraping (x100) at the protein level

Most of the basic statistics you can see at this page can be downloaded from this CSV file

For dipeptide frequency statistics click here
See this proteome in: uniprot_link
Proteome-pI is available under Creative Commons Attribution-NoDerivs license, for more details see here

Reference: Kozlowski LP. Proteome-pI 2.0: Proteome Isoelectric Point Database Update. Nucleic Acids Res. 2021, doi: 10.1093/nar/gkab944 Contact: Lukasz P. Kozlowski