Fusarium oxysporum f. sp. raphani 54005

Taxonomy: cellular organisms; Eukaryota; Opisthokonta; Fungi; Dikarya; Ascomycota; saccharomyceta; Pezizomycotina; leotiomyceta; sordariomyceta; Sordariomycetes; Hypocreomycetidae; Hypocreales; Nectriaceae; Fusarium; Fusarium oxysporum species complex; Fusarium oxysporum; Fusarium oxysporum f. sp. raphani

Average proteome isoelectric point is 6.46

Get precalculated fractions of proteins

Acidic
pI < 6.8
6.8-7.4
pI > 7.4
Basic
    
All



Virtual 2D-PAGE plot for 22754 proteins (isoelectric point calculated using IPC2_protein)

Get csv file with sequences according to given criteria:
        -     Method 

     -  kDa    
                                                                                      

* You can choose from 21 different methods for calculating isoelectric point

Summary statistics related to proteome-wise predictions


    
Protein with the lowest isoelectric point:
>tr|X0C8Z9|X0C8Z9_FUSOX Uncharacterized protein OS=Fusarium oxysporum f. sp. raphani 54005 OX=1089458 GN=FOQG_07011 PE=3 SV=1
MM1 pKa = 7.75PRR3 pKa = 11.84TIDD6 pKa = 3.33WGEE9 pKa = 3.38GRR11 pKa = 11.84YY12 pKa = 9.39PKK14 pKa = 10.67GNRR17 pKa = 11.84CEE19 pKa = 3.93YY20 pKa = 11.36DD21 pKa = 3.03NAKK24 pKa = 9.1WKK26 pKa = 10.48SGYY29 pKa = 10.4GYY31 pKa = 9.85WILWGTDD38 pKa = 2.91RR39 pKa = 11.84DD40 pKa = 3.72NGGVYY45 pKa = 10.03RR46 pKa = 11.84RR47 pKa = 11.84RR48 pKa = 11.84HH49 pKa = 5.3WYY51 pKa = 10.38CSISCRR57 pKa = 11.84NMDD60 pKa = 5.89AEE62 pKa = 4.65CCDD65 pKa = 4.1CNKK68 pKa = 10.36EE69 pKa = 4.28DD70 pKa = 6.14DD71 pKa = 4.08SSEE74 pKa = 4.36DD75 pKa = 4.14NSDD78 pKa = 5.45DD79 pKa = 5.87DD80 pKa = 6.69DD81 pKa = 6.38DD82 pKa = 5.79DD83 pKa = 6.82HH84 pKa = 9.41DD85 pKa = 5.49DD86 pKa = 4.96DD87 pKa = 5.97EE88 pKa = 5.43EE89 pKa = 5.27EE90 pKa = 4.51EE91 pKa = 5.26DD92 pKa = 5.37DD93 pKa = 5.75DD94 pKa = 6.55SVDD97 pKa = 4.48CVCQEE102 pKa = 3.84MKK104 pKa = 10.99AEE106 pKa = 4.5DD107 pKa = 4.28EE108 pKa = 4.34EE109 pKa = 5.66SDD111 pKa = 3.37

Molecular weight: 13.08 kDa
Isoelectric point according different methods:





Protein with the highest isoelectric point:
>tr|X0CPC0|X0CPC0_FUSOX R3H-assoc domain-containing protein OS=Fusarium oxysporum f. sp. raphani 54005 OX=1089458 GN=FOQG_05726 PE=4 SV=1
MM1 pKa = 6.94TGGMIVRR8 pKa = 11.84RR9 pKa = 11.84RR10 pKa = 11.84RR11 pKa = 11.84QATTGWGIGSQSAKK25 pKa = 7.28TQPRR29 pKa = 11.84RR30 pKa = 11.84SRR32 pKa = 11.84GPAGVSS38 pKa = 3.1

Molecular weight: 4.06 kDa
Isoelectric point according different methods:





Peptides (in silico digests for buttom-up proteomics)

Below you can find in silico digests of the whole proteome with Trypsin, Chymotrypsin, Trypsin+LysC, LysN, ArgC proteases suitable for different mass spec machines.

Try
ESI
ChTry
ESI
ArgC
ESI
LysN
ESI
TryLysC
ESI

Try
MALDI
ChTry
MALDI
ArgC
MALDI
LysN
MALDI
TryLysC
MALDI

Try
LTQ
ChTry
LTQ
ArgC
LTQ
LysN
LTQ
TryLysC
LTQ

Try
MSlow
ChTry
MSlow
ArgC
MSlow
LysN
MSlow
TryLysC
MSlow

Try
MShigh
ChTry
MShigh
ArgC
MShigh
LysN
MShigh
TryLysC
MShigh

General Statistics

Number of major isoforms

Number of additional isoforms

Number of all proteins

Number of amino acids

Min. Seq. Length

Max. Seq. Length

Avg. Seq. Length

Avg. Mol. Weight

19288

3466

22754

10087366

30

7623

443.3

49.23

Amino acid frequency

Ala

Cys

Asp

Glu

Phe

Gly

His

Ile

Lys

Leu

8.258 ± 0.017

1.348 ± 0.008

5.802 ± 0.011

6.203 ± 0.019

3.781 ± 0.011

6.685 ± 0.017

2.426 ± 0.008

5.114 ± 0.013

4.993 ± 0.016

8.852 ± 0.019

Met

Asn

Gln

Pro

Arg

Ser

Thr

Val

Trp

Tyr

2.285 ± 0.007

3.815 ± 0.009

5.929 ± 0.019

4.093 ± 0.014

5.927 ± 0.016

8.154 ± 0.02

5.977 ± 0.021

6.025 ± 0.013

1.526 ± 0.007

2.806 ± 0.008
Note: For amino acid frequency statistics the error has been estimated with the bootstraping (x100) at the protein level

Most of the basic statistics you can see at this page can be downloaded from this CSV file

For dipeptide frequency statistics click here
See this proteome in: uniprot_link
Proteome-pI is available under Creative Commons Attribution-NoDerivs license, for more details see here

Reference: Kozlowski LP. Proteome-pI 2.0: Proteome Isoelectric Point Database Update. Nucleic Acids Res. 2021, doi: 10.1093/nar/gkab944 Contact: Lukasz P. Kozlowski