Capybara microvirus Cap3_SP_394

Taxonomy: Viruses; Monodnaviria; Sangervirae; Phixviricota; Malgrandaviricetes; Petitvirales; Microviridae; unclassified Microviridae

Average proteome isoelectric point is 5.46

Get precalculated fractions of proteins

Acidic
pI < 6.8
6.8-7.4
pI > 7.4
Basic
    
All



Virtual 2D-PAGE plot for 4 proteins (isoelectric point calculated using IPC2_protein)

Get csv file with sequences according to given criteria:
        -     Method 

     -  kDa    
                                                                                      

* You can choose from 21 different methods for calculating isoelectric point

Summary statistics related to proteome-wise predictions


    
Protein with the lowest isoelectric point:
>tr|A0A4P8W5B0|A0A4P8W5B0_9VIRU Uncharacterized protein OS=Capybara microvirus Cap3_SP_394 OX=2585444 PE=4 SV=1
MM1 pKa = 7.64VDD3 pKa = 3.65DD4 pKa = 5.44FLVEE8 pKa = 4.28SLPQEE13 pKa = 4.47DD14 pKa = 4.03GSYY17 pKa = 10.56ISVSVRR23 pKa = 11.84NQQKK27 pKa = 10.99DD28 pKa = 3.29YY29 pKa = 11.53GDD31 pKa = 3.83YY32 pKa = 11.43DD33 pKa = 3.94NYY35 pKa = 11.1TPDD38 pKa = 3.38ALSRR42 pKa = 11.84TGQTLPTMMMPDD54 pKa = 3.44GSSRR58 pKa = 11.84LEE60 pKa = 4.0ASSSLSSLLAQGEE73 pKa = 4.56QILSQPDD80 pKa = 3.71STPVTTDD87 pKa = 2.79NNGG90 pKa = 2.86

Molecular weight: 9.77 kDa
Isoelectric point according different methods:





Protein with the highest isoelectric point:
>tr|A0A4P8W4Q6|A0A4P8W4Q6_9VIRU Major capsid protein OS=Capybara microvirus Cap3_SP_394 OX=2585444 PE=3 SV=1
MM1 pKa = 7.47YY2 pKa = 9.46STIHH6 pKa = 6.23LKK8 pKa = 10.95SNAKK12 pKa = 8.78SWRR15 pKa = 11.84PLADD19 pKa = 2.93AAYY22 pKa = 9.71YY23 pKa = 9.87DD24 pKa = 4.39LPRR27 pKa = 11.84PTTFASKK34 pKa = 8.28TAARR38 pKa = 11.84YY39 pKa = 9.79GYY41 pKa = 9.22ICRR44 pKa = 11.84IKK46 pKa = 10.85AQLQDD51 pKa = 2.99TWRR54 pKa = 11.84SGGKK58 pKa = 10.07AFFYY62 pKa = 10.59TLTHH66 pKa = 6.26AQHH69 pKa = 6.52SLPHH73 pKa = 6.3FYY75 pKa = 10.79GIPVHH80 pKa = 7.08DD81 pKa = 3.55YY82 pKa = 10.49RR83 pKa = 11.84VINEE87 pKa = 4.3FFNCSGFSKK96 pKa = 10.84VLMRR100 pKa = 11.84RR101 pKa = 11.84HH102 pKa = 5.46NCRR105 pKa = 11.84IKK107 pKa = 10.35YY108 pKa = 9.67FLVSEE113 pKa = 4.71LGNGGEE119 pKa = 4.07SHH121 pKa = 6.08QYY123 pKa = 9.85KK124 pKa = 10.23GVRR127 pKa = 11.84GLLNNPHH134 pKa = 5.6YY135 pKa = 10.68HH136 pKa = 6.26VIFFLTSLDD145 pKa = 3.56DD146 pKa = 4.07HH147 pKa = 7.05LSVDD151 pKa = 3.33ITADD155 pKa = 3.26QLKK158 pKa = 10.36YY159 pKa = 10.4CVQKK163 pKa = 10.57YY164 pKa = 6.97WSGLPDD170 pKa = 3.51YY171 pKa = 11.11GVDD174 pKa = 3.46PKK176 pKa = 11.1VDD178 pKa = 4.39RR179 pKa = 11.84IRR181 pKa = 11.84DD182 pKa = 3.51NKK184 pKa = 10.11AALGAWIKK192 pKa = 10.85QYY194 pKa = 11.14GKK196 pKa = 10.94YY197 pKa = 10.02GLAWPGSLHH206 pKa = 6.34NGEE209 pKa = 5.27ILNQPDD215 pKa = 3.21SDD217 pKa = 3.89FANKK221 pKa = 9.27YY222 pKa = 6.82VCKK225 pKa = 10.53YY226 pKa = 8.6VVKK229 pKa = 10.71NHH231 pKa = 5.47ATYY234 pKa = 8.82TQAIRR239 pKa = 11.84LRR241 pKa = 11.84SEE243 pKa = 4.12LNRR246 pKa = 11.84LVYY249 pKa = 10.35GRR251 pKa = 11.84YY252 pKa = 9.7DD253 pKa = 3.37KK254 pKa = 11.41EE255 pKa = 3.95GVYY258 pKa = 9.95IDD260 pKa = 4.04GLLEE264 pKa = 4.55KK265 pKa = 10.1MMHH268 pKa = 6.18NPWQAYY274 pKa = 10.1AFMHH278 pKa = 6.74RR279 pKa = 11.84PKK281 pKa = 10.38KK282 pKa = 8.07WQCDD286 pKa = 3.65VYY288 pKa = 11.09RR289 pKa = 11.84DD290 pKa = 3.97YY291 pKa = 12.03NDD293 pKa = 3.22GSEE296 pKa = 4.12VDD298 pKa = 3.12KK299 pKa = 11.43SGYY302 pKa = 8.3TDD304 pKa = 4.4QEE306 pKa = 4.48ACLSWCLYY314 pKa = 9.54RR315 pKa = 11.84LKK317 pKa = 10.86SEE319 pKa = 4.13WQRR322 pKa = 11.84HH323 pKa = 4.24CTEE326 pKa = 4.49HH327 pKa = 6.43YY328 pKa = 9.43EE329 pKa = 4.15KK330 pKa = 10.87FIVRR334 pKa = 11.84QLALFRR340 pKa = 11.84SRR342 pKa = 11.84FAPHH346 pKa = 5.83IRR348 pKa = 11.84ASHH351 pKa = 5.6GVGVSALLEE360 pKa = 4.23VDD362 pKa = 5.63DD363 pKa = 6.53DD364 pKa = 4.91DD365 pKa = 4.18LTIDD369 pKa = 3.37VRR371 pKa = 11.84EE372 pKa = 4.09NGVVTKK378 pKa = 10.6HH379 pKa = 6.55RR380 pKa = 11.84ITGYY384 pKa = 9.79LARR387 pKa = 11.84KK388 pKa = 8.96KK389 pKa = 10.76LYY391 pKa = 10.46DD392 pKa = 3.61VVEE395 pKa = 4.41APGNQTRR402 pKa = 11.84YY403 pKa = 9.3VRR405 pKa = 11.84NSWYY409 pKa = 10.12KK410 pKa = 9.97QWLKK414 pKa = 11.31DD415 pKa = 3.53HH416 pKa = 6.6LAEE419 pKa = 6.11KK420 pKa = 9.9IDD422 pKa = 3.37KK423 pKa = 10.5CEE425 pKa = 3.84RR426 pKa = 11.84RR427 pKa = 11.84LRR429 pKa = 11.84DD430 pKa = 3.03LWYY433 pKa = 8.75NTDD436 pKa = 3.41INLLSKK442 pKa = 9.69ICEE445 pKa = 4.09YY446 pKa = 11.33NEE448 pKa = 3.49VDD450 pKa = 3.73VIPRR454 pKa = 11.84VVSDD458 pKa = 3.91FRR460 pKa = 11.84DD461 pKa = 3.36LAIYY465 pKa = 10.04ACVYY469 pKa = 9.98RR470 pKa = 11.84YY471 pKa = 9.82RR472 pKa = 11.84HH473 pKa = 5.63FHH475 pKa = 6.89RR476 pKa = 11.84DD477 pKa = 3.41DD478 pKa = 3.95PYY480 pKa = 11.61EE481 pKa = 3.98LYY483 pKa = 10.54NYY485 pKa = 9.63KK486 pKa = 10.12KK487 pKa = 10.73YY488 pKa = 11.05YY489 pKa = 7.57EE490 pKa = 4.09QCIDD494 pKa = 4.64APLEE498 pKa = 4.22DD499 pKa = 4.34TGCSYY504 pKa = 11.5AVYY507 pKa = 10.6QRR509 pKa = 11.84MGSFGQEE516 pKa = 3.62GTDD519 pKa = 3.48YY520 pKa = 11.13IPTNFVWPHH529 pKa = 5.59MEE531 pKa = 4.18ADD533 pKa = 3.78MEE535 pKa = 4.35VLDD538 pKa = 5.19MISDD542 pKa = 3.8YY543 pKa = 11.44LFAQIDD549 pKa = 3.64INRR552 pKa = 11.84DD553 pKa = 3.46KK554 pKa = 10.85EE555 pKa = 4.31WEE557 pKa = 4.24LKK559 pKa = 9.08SHH561 pKa = 6.09QMYY564 pKa = 10.23NQQQLAYY571 pKa = 9.92DD572 pKa = 3.87

Molecular weight: 67.54 kDa
Isoelectric point according different methods:





Peptides (in silico digests for buttom-up proteomics)

Below you can find in silico digests of the whole proteome with Trypsin, Chymotrypsin, Trypsin+LysC, LysN, ArgC proteases suitable for different mass spec machines.

Try
ESI
ChTry
ESI
ArgC
ESI
LysN
ESI
TryLysC
ESI

Try
MALDI
ChTry
MALDI
ArgC
MALDI
LysN
MALDI
TryLysC
MALDI

Try
LTQ
ChTry
LTQ
ArgC
LTQ
LysN
LTQ
TryLysC
LTQ

Try
MSlow
ChTry
MSlow
ArgC
MSlow
LysN
MSlow
TryLysC
MSlow

Try
MShigh
ChTry
MShigh
ArgC
MShigh
LysN
MShigh
TryLysC
MShigh

General Statistics

Number of major isoforms

Number of additional isoforms

Number of all proteins

Number of amino acids

Min. Seq. Length

Max. Seq. Length

Avg. Seq. Length

Avg. Mol. Weight

4

0

4

1600

90

575

400.0

45.32

Amino acid frequency

Ala

Cys

Asp

Glu

Phe

Gly

His

Ile

Lys

Leu

7.375 ± 0.967

1.188 ± 0.576

7.313 ± 0.686

3.938 ± 0.781

3.25 ± 0.855

6.563 ± 0.573

2.75 ± 0.724

5.625 ± 0.657

4.5 ± 0.933

8.438 ± 0.377

Met

Asn

Gln

Pro

Arg

Ser

Thr

Val

Trp

Tyr

2.375 ± 0.42

5.063 ± 0.33

3.375 ± 0.456

6.188 ± 0.922

5.25 ± 0.739

8.0 ± 1.593

5.75 ± 0.954

5.438 ± 0.322

1.75 ± 0.378

5.875 ± 1.207
Note: For amino acid frequency statistics the error has been estimated with the bootstraping (x100) at the protein level

Most of the basic statistics you can see at this page can be downloaded from this CSV file

For dipeptide frequency statistics click here
See this proteome in: uniprot_link
Proteome-pI is available under Creative Commons Attribution-NoDerivs license, for more details see here

Reference: Kozlowski LP. Proteome-pI 2.0: Proteome Isoelectric Point Database Update. Nucleic Acids Res. 2021, doi: 10.1093/nar/gkab944 Contact: Lukasz P. Kozlowski