Sulfolobus monocaudavirus SMV4

Taxonomy: Viruses; Bicaudaviridae; unclassified Bicaudaviridae

Average proteome isoelectric point is 6.32

Get precalculated fractions of proteins

Acidic
pI < 6.8
6.8-7.4
pI > 7.4
Basic
    
All



Virtual 2D-PAGE plot for 68 proteins (isoelectric point calculated using IPC2_protein)

Get csv file with sequences according to given criteria:
        -     Method 

     -  kDa    
                                                                                      

* You can choose from 21 different methods for calculating isoelectric point

Summary statistics related to proteome-wise predictions


    
Protein with the lowest isoelectric point:
>tr|A0A0N9P771|A0A0N9P771_9VIRU Uncharacterized protein OS=Sulfolobus monocaudavirus SMV4 OX=1732178 PE=4 SV=1
MM1 pKa = 7.81GILEE5 pKa = 4.49DD6 pKa = 3.79VQNALAYY13 pKa = 7.85YY14 pKa = 10.09QKK16 pKa = 9.71TAVDD20 pKa = 4.12EE21 pKa = 4.51KK22 pKa = 11.11DD23 pKa = 3.11TLYY26 pKa = 11.29LNNIYY31 pKa = 10.4SQLYY35 pKa = 9.24YY36 pKa = 10.13ILSVEE41 pKa = 4.02NRR43 pKa = 11.84PLNDD47 pKa = 3.45TEE49 pKa = 4.82FDD51 pKa = 3.88SLMKK55 pKa = 10.8ALGINDD61 pKa = 3.64DD62 pKa = 3.95TQLVAEE68 pKa = 4.56YY69 pKa = 11.09QNMTDD74 pKa = 3.76DD75 pKa = 3.76QKK77 pKa = 11.63KK78 pKa = 9.09QLLMQILQMIDD89 pKa = 3.05NVMKK93 pKa = 10.78NIHH96 pKa = 5.53TMVNYY101 pKa = 10.42

Molecular weight: 11.83 kDa
Isoelectric point according different methods:





Protein with the highest isoelectric point:
>tr|A0A0N9P9T6|A0A0N9P9T6_9VIRU Uncharacterized protein OS=Sulfolobus monocaudavirus SMV4 OX=1732178 PE=4 SV=1
MM1 pKa = 7.71GIYY4 pKa = 9.25XKK6 pKa = 9.77IDD8 pKa = 4.34KK9 pKa = 9.96ILKK12 pKa = 9.68NSTIPGIIKK21 pKa = 9.97IAVILLLLRR30 pKa = 11.84DD31 pKa = 3.62KK32 pKa = 10.92RR33 pKa = 11.84RR34 pKa = 11.84NEE36 pKa = 4.21AIQLYY41 pKa = 10.26NSYY44 pKa = 10.63PEE46 pKa = 4.24YY47 pKa = 9.86NTSFNHH53 pKa = 7.01FIVEE57 pKa = 4.14YY58 pKa = 9.71EE59 pKa = 4.05VGKK62 pKa = 10.17NRR64 pKa = 11.84YY65 pKa = 7.43VRR67 pKa = 11.84RR68 pKa = 11.84LTHH71 pKa = 6.39KK72 pKa = 10.19YY73 pKa = 10.43LRR75 pKa = 11.84TLLFLRR81 pKa = 11.84SARR84 pKa = 11.84LYY86 pKa = 9.97NFKK89 pKa = 10.58IILL92 pKa = 3.91

Molecular weight: 10.98 kDa
Isoelectric point according different methods:





Peptides (in silico digests for buttom-up proteomics)

Below you can find in silico digests of the whole proteome with Trypsin, Chymotrypsin, Trypsin+LysC, LysN, ArgC proteases suitable for different mass spec machines.

Try
ESI
ChTry
ESI
ArgC
ESI
LysN
ESI
TryLysC
ESI

Try
MALDI
ChTry
MALDI
ArgC
MALDI
LysN
MALDI
TryLysC
MALDI

Try
LTQ
ChTry
LTQ
ArgC
LTQ
LysN
LTQ
TryLysC
LTQ

Try
MSlow
ChTry
MSlow
ArgC
MSlow
LysN
MSlow
TryLysC
MSlow

Try
MShigh
ChTry
MShigh
ArgC
MShigh
LysN
MShigh
TryLysC
MShigh

General Statistics

Number of major isoforms

Number of additional isoforms

Number of all proteins

Number of amino acids

Min. Seq. Length

Max. Seq. Length

Avg. Seq. Length

Avg. Mol. Weight

68

0

68

15051

45

1180

221.3

24.9

Amino acid frequency

Ala

Cys

Asp

Glu

Phe

Gly

His

Ile

Lys

Leu

5.481 ± 0.295

0.551 ± 0.091

4.638 ± 0.44

6.817 ± 0.875

4.438 ± 0.294

5.063 ± 0.423

0.89 ± 0.095

8.225 ± 0.359

6.618 ± 0.643

10.451 ± 0.438

Met

Asn

Gln

Pro

Arg

Ser

Thr

Val

Trp

Tyr

1.973 ± 0.181

6.398 ± 0.342

3.967 ± 0.331

4.764 ± 0.587

2.824 ± 0.282

7.734 ± 0.569

6.352 ± 0.526

6.823 ± 0.435

0.664 ± 0.111

4.976 ± 0.379
Note: For amino acid frequency statistics the error has been estimated with the bootstraping (x100) at the protein level

Most of the basic statistics you can see at this page can be downloaded from this CSV file

For dipeptide frequency statistics click here
See this proteome in: uniprot_link
Proteome-pI is available under Creative Commons Attribution-NoDerivs license, for more details see here

Reference: Kozlowski LP. Proteome-pI 2.0: Proteome Isoelectric Point Database Update. Nucleic Acids Res. 2021, doi: 10.1093/nar/gkab944 Contact: Lukasz P. Kozlowski