Amino acid dipepetide frequency for Sclerotinia sclerotiorum hypovirus 2

Apart from single amino acid frequencies one can also calculate so called amino acid dipeptide frequency.

There is 400 possibilites (441 if we consider Xaa as additional 21st amino acid representing all non-standard or unknown amino acids). Thus, if the dipeptides would be present randomly in proteins each amino acid dipeptide should be present with 0.25% frequency. As it is not the case in the nature, for better visablity all more than expected dipepetides are marked by red, and those which are underrepresented are marked by blue in the table.

All values are presented as per milles (‰), therefore need to be multiplied by 10-3.

For more information see sequence space article on Wikipedia.

AlaCysAspGluPheGlyHisIleLysLeuMetAsnProGlnArgSerThrValTrpTyrXaa
Ala
6.258AlaAla: 6.258 ± 0.0
1.511AlaCys: 1.511 ± 0.0
3.237AlaAsp: 3.237 ± 0.0
2.59AlaGlu: 2.59 ± 0.0
3.669AlaPhe: 3.669 ± 0.0
4.748AlaGly: 4.748 ± 0.0
2.805AlaHis: 2.805 ± 0.0
3.884AlaIle: 3.884 ± 0.0
6.042AlaLys: 6.042 ± 0.0
6.69AlaLeu: 6.69 ± 0.0
3.453AlaMet: 3.453 ± 0.0
3.021AlaAsn: 3.021 ± 0.0
5.395AlaPro: 5.395 ± 0.0
2.59AlaGln: 2.59 ± 0.0
4.532AlaArg: 4.532 ± 0.0
5.395AlaSer: 5.395 ± 0.0
4.532AlaThr: 4.532 ± 0.0
4.532AlaVal: 4.532 ± 0.0
2.374AlaTrp: 2.374 ± 0.0
2.158AlaTyr: 2.158 ± 0.0
0.0AlaXaa: 0.0 ± 0.0
Cys
1.726CysAla: 1.726 ± 0.0
0.216CysCys: 0.216 ± 0.0
1.511CysAsp: 1.511 ± 0.0
1.726CysGlu: 1.726 ± 0.0
0.216CysPhe: 0.216 ± 0.0
0.647CysGly: 0.647 ± 0.0
0.863CysHis: 0.863 ± 0.0
0.432CysIle: 0.432 ± 0.0
0.647CysLys: 0.647 ± 0.0
1.726CysLeu: 1.726 ± 0.0
0.647CysMet: 0.647 ± 0.0
0.432CysAsn: 0.432 ± 0.0
1.511CysPro: 1.511 ± 0.0
0.432CysGln: 0.432 ± 0.0
1.511CysArg: 1.511 ± 0.0
1.726CysSer: 1.726 ± 0.0
0.863CysThr: 0.863 ± 0.0
0.432CysVal: 0.432 ± 0.0
0.0CysTrp: 0.0 ± 0.0
1.079CysTyr: 1.079 ± 0.0
0.0CysXaa: 0.0 ± 0.0
Asp
2.59AspAla: 2.59 ± 0.0
1.079AspCys: 1.079 ± 0.0
3.237AspAsp: 3.237 ± 0.0
4.1AspGlu: 4.1 ± 0.0
2.59AspPhe: 2.59 ± 0.0
3.884AspGly: 3.884 ± 0.0
1.942AspHis: 1.942 ± 0.0
4.1AspIle: 4.1 ± 0.0
1.511AspLys: 1.511 ± 0.0
4.1AspLeu: 4.1 ± 0.0
2.158AspMet: 2.158 ± 0.0
2.59AspAsn: 2.59 ± 0.0
4.748AspPro: 4.748 ± 0.0
1.942AspGln: 1.942 ± 0.0
3.237AspArg: 3.237 ± 0.0
4.316AspSer: 4.316 ± 0.0
2.59AspThr: 2.59 ± 0.0
2.805AspVal: 2.805 ± 0.0
0.863AspTrp: 0.863 ± 0.0
1.511AspTyr: 1.511 ± 0.0
0.0AspXaa: 0.0 ± 0.0
Glu
5.826GluAla: 5.826 ± 0.0
0.432GluCys: 0.432 ± 0.0
3.884GluAsp: 3.884 ± 0.0
3.237GluGlu: 3.237 ± 0.0
2.374GluPhe: 2.374 ± 0.0
3.021GluGly: 3.021 ± 0.0
1.079GluHis: 1.079 ± 0.0
2.59GluIle: 2.59 ± 0.0
2.59GluLys: 2.59 ± 0.0
6.042GluLeu: 6.042 ± 0.0
1.726GluMet: 1.726 ± 0.0
1.511GluAsn: 1.511 ± 0.0
2.374GluPro: 2.374 ± 0.0
2.59GluGln: 2.59 ± 0.0
3.669GluArg: 3.669 ± 0.0
4.1GluSer: 4.1 ± 0.0
3.453GluThr: 3.453 ± 0.0
2.59GluVal: 2.59 ± 0.0
1.079GluTrp: 1.079 ± 0.0
2.158GluTyr: 2.158 ± 0.0
0.0GluXaa: 0.0 ± 0.0
Phe
1.511PheAla: 1.511 ± 0.0
1.511PheCys: 1.511 ± 0.0
1.726PheAsp: 1.726 ± 0.0
1.295PheGlu: 1.295 ± 0.0
0.647PhePhe: 0.647 ± 0.0
2.374PheGly: 2.374 ± 0.0
1.079PheHis: 1.079 ± 0.0
1.511PheIle: 1.511 ± 0.0
1.511PheLys: 1.511 ± 0.0
1.942PheLeu: 1.942 ± 0.0
0.647PheMet: 0.647 ± 0.0
2.59PheAsn: 2.59 ± 0.0
2.805PhePro: 2.805 ± 0.0
3.021PheGln: 3.021 ± 0.0
3.237PheArg: 3.237 ± 0.0
4.1PheSer: 4.1 ± 0.0
2.158PheThr: 2.158 ± 0.0
2.805PheVal: 2.805 ± 0.0
1.079PheTrp: 1.079 ± 0.0
1.511PheTyr: 1.511 ± 0.0
0.0PheXaa: 0.0 ± 0.0
Gly
3.453GlyAla: 3.453 ± 0.0
1.079GlyCys: 1.079 ± 0.0
3.237GlyAsp: 3.237 ± 0.0
3.237GlyGlu: 3.237 ± 0.0
3.021GlyPhe: 3.021 ± 0.0
3.021GlyGly: 3.021 ± 0.0
2.59GlyHis: 2.59 ± 0.0
3.453GlyIle: 3.453 ± 0.0
2.805GlyLys: 2.805 ± 0.0
3.453GlyLeu: 3.453 ± 0.0
1.079GlyMet: 1.079 ± 0.0
1.942GlyAsn: 1.942 ± 0.0
3.669GlyPro: 3.669 ± 0.0
4.1GlyGln: 4.1 ± 0.0
3.884GlyArg: 3.884 ± 0.0
4.532GlySer: 4.532 ± 0.0
4.532GlyThr: 4.532 ± 0.0
3.669GlyVal: 3.669 ± 0.0
1.079GlyTrp: 1.079 ± 0.0
1.942GlyTyr: 1.942 ± 0.0
0.0GlyXaa: 0.0 ± 0.0
His
1.942HisAla: 1.942 ± 0.0
0.432HisCys: 0.432 ± 0.0
0.647HisAsp: 0.647 ± 0.0
1.942HisGlu: 1.942 ± 0.0
0.432HisPhe: 0.432 ± 0.0
2.374HisGly: 2.374 ± 0.0
1.079HisHis: 1.079 ± 0.0
1.726HisIle: 1.726 ± 0.0
1.295HisLys: 1.295 ± 0.0
2.374HisLeu: 2.374 ± 0.0
0.647HisMet: 0.647 ± 0.0
1.295HisAsn: 1.295 ± 0.0
0.647HisPro: 0.647 ± 0.0
1.511HisGln: 1.511 ± 0.0
1.726HisArg: 1.726 ± 0.0
0.863HisSer: 0.863 ± 0.0
1.942HisThr: 1.942 ± 0.0
1.942HisVal: 1.942 ± 0.0
0.647HisTrp: 0.647 ± 0.0
0.647HisTyr: 0.647 ± 0.0
0.0HisXaa: 0.0 ± 0.0
Ile
4.748IleAla: 4.748 ± 0.0
0.647IleCys: 0.647 ± 0.0
3.884IleAsp: 3.884 ± 0.0
3.237IleGlu: 3.237 ± 0.0
2.805IlePhe: 2.805 ± 0.0
2.374IleGly: 2.374 ± 0.0
1.295IleHis: 1.295 ± 0.0
1.942IleIle: 1.942 ± 0.0
2.158IleLys: 2.158 ± 0.0
4.748IleLeu: 4.748 ± 0.0
1.079IleMet: 1.079 ± 0.0
1.726IleAsn: 1.726 ± 0.0
1.726IlePro: 1.726 ± 0.0
2.158IleGln: 2.158 ± 0.0
3.669IleArg: 3.669 ± 0.0
3.021IleSer: 3.021 ± 0.0
3.237IleThr: 3.237 ± 0.0
4.532IleVal: 4.532 ± 0.0
0.863IleTrp: 0.863 ± 0.0
1.295IleTyr: 1.295 ± 0.0
0.0IleXaa: 0.0 ± 0.0
Lys
5.179LysAla: 5.179 ± 0.0
1.079LysCys: 1.079 ± 0.0
1.295LysAsp: 1.295 ± 0.0
2.59LysGlu: 2.59 ± 0.0
1.511LysPhe: 1.511 ± 0.0
2.59LysGly: 2.59 ± 0.0
1.079LysHis: 1.079 ± 0.0
3.021LysIle: 3.021 ± 0.0
2.158LysLys: 2.158 ± 0.0
5.179LysLeu: 5.179 ± 0.0
0.863LysMet: 0.863 ± 0.0
1.942LysAsn: 1.942 ± 0.0
3.669LysPro: 3.669 ± 0.0
2.158LysGln: 2.158 ± 0.0
3.453LysArg: 3.453 ± 0.0
1.942LysSer: 1.942 ± 0.0
3.021LysThr: 3.021 ± 0.0
2.374LysVal: 2.374 ± 0.0
1.079LysTrp: 1.079 ± 0.0
1.079LysTyr: 1.079 ± 0.0
0.0LysXaa: 0.0 ± 0.0
Leu
8.632LeuAla: 8.632 ± 0.0
1.511LeuCys: 1.511 ± 0.0
5.611LeuAsp: 5.611 ± 0.0
5.826LeuGlu: 5.826 ± 0.0
2.805LeuPhe: 2.805 ± 0.0
4.316LeuGly: 4.316 ± 0.0
1.726LeuHis: 1.726 ± 0.0
5.611LeuIle: 5.611 ± 0.0
5.179LeuLys: 5.179 ± 0.0
9.063LeuLeu: 9.063 ± 0.0
2.158LeuMet: 2.158 ± 0.0
3.021LeuAsn: 3.021 ± 0.0
6.042LeuPro: 6.042 ± 0.0
3.669LeuGln: 3.669 ± 0.0
7.121LeuArg: 7.121 ± 0.0
9.063LeuSer: 9.063 ± 0.0
4.316LeuThr: 4.316 ± 0.0
5.826LeuVal: 5.826 ± 0.0
1.511LeuTrp: 1.511 ± 0.0
2.805LeuTyr: 2.805 ± 0.0
0.0LeuXaa: 0.0 ± 0.0
Met
3.021MetAla: 3.021 ± 0.0
0.0MetCys: 0.0 ± 0.0
1.726MetAsp: 1.726 ± 0.0
0.863MetGlu: 0.863 ± 0.0
1.079MetPhe: 1.079 ± 0.0
1.295MetGly: 1.295 ± 0.0
1.079MetHis: 1.079 ± 0.0
1.295MetIle: 1.295 ± 0.0
0.863MetLys: 0.863 ± 0.0
2.59MetLeu: 2.59 ± 0.0
0.647MetMet: 0.647 ± 0.0
0.216MetAsn: 0.216 ± 0.0
1.942MetPro: 1.942 ± 0.0
1.295MetGln: 1.295 ± 0.0
1.511MetArg: 1.511 ± 0.0
2.805MetSer: 2.805 ± 0.0
1.511MetThr: 1.511 ± 0.0
1.295MetVal: 1.295 ± 0.0
0.216MetTrp: 0.216 ± 0.0
0.647MetTyr: 0.647 ± 0.0
0.0MetXaa: 0.0 ± 0.0
Asn
3.453AsnAla: 3.453 ± 0.0
0.863AsnCys: 0.863 ± 0.0
2.805AsnAsp: 2.805 ± 0.0
0.863AsnGlu: 0.863 ± 0.0
1.511AsnPhe: 1.511 ± 0.0
4.316AsnGly: 4.316 ± 0.0
0.863AsnHis: 0.863 ± 0.0
1.295AsnIle: 1.295 ± 0.0
1.511AsnLys: 1.511 ± 0.0
2.805AsnLeu: 2.805 ± 0.0
1.511AsnMet: 1.511 ± 0.0
0.647AsnAsn: 0.647 ± 0.0
1.295AsnPro: 1.295 ± 0.0
2.158AsnGln: 2.158 ± 0.0
3.237AsnArg: 3.237 ± 0.0
1.942AsnSer: 1.942 ± 0.0
2.374AsnThr: 2.374 ± 0.0
1.726AsnVal: 1.726 ± 0.0
0.863AsnTrp: 0.863 ± 0.0
1.079AsnTyr: 1.079 ± 0.0
0.0AsnXaa: 0.0 ± 0.0
Pro
4.316ProAla: 4.316 ± 0.0
1.295ProCys: 1.295 ± 0.0
3.884ProAsp: 3.884 ± 0.0
3.884ProGlu: 3.884 ± 0.0
4.532ProPhe: 4.532 ± 0.0
3.453ProGly: 3.453 ± 0.0
1.079ProHis: 1.079 ± 0.0
3.453ProIle: 3.453 ± 0.0
1.726ProLys: 1.726 ± 0.0
5.395ProLeu: 5.395 ± 0.0
1.079ProMet: 1.079 ± 0.0
2.59ProAsn: 2.59 ± 0.0
5.179ProPro: 5.179 ± 0.0
1.726ProGln: 1.726 ± 0.0
3.669ProArg: 3.669 ± 0.0
4.1ProSer: 4.1 ± 0.0
3.237ProThr: 3.237 ± 0.0
3.669ProVal: 3.669 ± 0.0
1.511ProTrp: 1.511 ± 0.0
2.158ProTyr: 2.158 ± 0.0
0.0ProXaa: 0.0 ± 0.0
Gln
4.316GlnAla: 4.316 ± 0.0
0.863GlnCys: 0.863 ± 0.0
2.59GlnAsp: 2.59 ± 0.0
2.805GlnGlu: 2.805 ± 0.0
0.863GlnPhe: 0.863 ± 0.0
3.237GlnGly: 3.237 ± 0.0
0.647GlnHis: 0.647 ± 0.0
2.59GlnIle: 2.59 ± 0.0
1.942GlnLys: 1.942 ± 0.0
3.669GlnLeu: 3.669 ± 0.0
1.295GlnMet: 1.295 ± 0.0
1.079GlnAsn: 1.079 ± 0.0
1.295GlnPro: 1.295 ± 0.0
0.863GlnGln: 0.863 ± 0.0
4.748GlnArg: 4.748 ± 0.0
3.021GlnSer: 3.021 ± 0.0
2.374GlnThr: 2.374 ± 0.0
2.158GlnVal: 2.158 ± 0.0
0.216GlnTrp: 0.216 ± 0.0
1.942GlnTyr: 1.942 ± 0.0
0.0GlnXaa: 0.0 ± 0.0
Arg
4.963ArgAla: 4.963 ± 0.0
1.295ArgCys: 1.295 ± 0.0
3.884ArgAsp: 3.884 ± 0.0
4.1ArgGlu: 4.1 ± 0.0
1.511ArgPhe: 1.511 ± 0.0
4.1ArgGly: 4.1 ± 0.0
1.079ArgHis: 1.079 ± 0.0
3.669ArgIle: 3.669 ± 0.0
3.884ArgLys: 3.884 ± 0.0
7.769ArgLeu: 7.769 ± 0.0
1.295ArgMet: 1.295 ± 0.0
4.1ArgAsn: 4.1 ± 0.0
2.158ArgPro: 2.158 ± 0.0
3.021ArgGln: 3.021 ± 0.0
3.453ArgArg: 3.453 ± 0.0
5.826ArgSer: 5.826 ± 0.0
3.237ArgThr: 3.237 ± 0.0
4.748ArgVal: 4.748 ± 0.0
1.295ArgTrp: 1.295 ± 0.0
2.158ArgTyr: 2.158 ± 0.0
0.0ArgXaa: 0.0 ± 0.0
Ser
6.042SerAla: 6.042 ± 0.0
1.511SerCys: 1.511 ± 0.0
4.1SerAsp: 4.1 ± 0.0
4.1SerGlu: 4.1 ± 0.0
2.158SerPhe: 2.158 ± 0.0
3.884SerGly: 3.884 ± 0.0
0.863SerHis: 0.863 ± 0.0
4.1SerIle: 4.1 ± 0.0
4.316SerLys: 4.316 ± 0.0
7.553SerLeu: 7.553 ± 0.0
2.59SerMet: 2.59 ± 0.0
2.158SerAsn: 2.158 ± 0.0
3.669SerPro: 3.669 ± 0.0
3.021SerGln: 3.021 ± 0.0
4.316SerArg: 4.316 ± 0.0
6.474SerSer: 6.474 ± 0.0
3.021SerThr: 3.021 ± 0.0
3.021SerVal: 3.021 ± 0.0
1.942SerTrp: 1.942 ± 0.0
1.942SerTyr: 1.942 ± 0.0
0.0SerXaa: 0.0 ± 0.0
Thr
4.963ThrAla: 4.963 ± 0.0
0.647ThrCys: 0.647 ± 0.0
1.942ThrAsp: 1.942 ± 0.0
3.669ThrGlu: 3.669 ± 0.0
3.237ThrPhe: 3.237 ± 0.0
3.453ThrGly: 3.453 ± 0.0
1.511ThrHis: 1.511 ± 0.0
1.942ThrIle: 1.942 ± 0.0
2.374ThrLys: 2.374 ± 0.0
4.748ThrLeu: 4.748 ± 0.0
0.647ThrMet: 0.647 ± 0.0
2.158ThrAsn: 2.158 ± 0.0
4.532ThrPro: 4.532 ± 0.0
2.805ThrGln: 2.805 ± 0.0
3.453ThrArg: 3.453 ± 0.0
2.59ThrSer: 2.59 ± 0.0
2.59ThrThr: 2.59 ± 0.0
3.669ThrVal: 3.669 ± 0.0
1.295ThrTrp: 1.295 ± 0.0
1.942ThrTyr: 1.942 ± 0.0
0.0ThrXaa: 0.0 ± 0.0
Val
4.1ValAla: 4.1 ± 0.0
1.295ValCys: 1.295 ± 0.0
3.884ValAsp: 3.884 ± 0.0
3.237ValGlu: 3.237 ± 0.0
1.295ValPhe: 1.295 ± 0.0
3.021ValGly: 3.021 ± 0.0
1.726ValHis: 1.726 ± 0.0
3.021ValIle: 3.021 ± 0.0
2.805ValLys: 2.805 ± 0.0
8.632ValLeu: 8.632 ± 0.0
0.863ValMet: 0.863 ± 0.0
2.59ValAsn: 2.59 ± 0.0
6.042ValPro: 6.042 ± 0.0
1.295ValGln: 1.295 ± 0.0
4.1ValArg: 4.1 ± 0.0
2.374ValSer: 2.374 ± 0.0
2.374ValThr: 2.374 ± 0.0
3.021ValVal: 3.021 ± 0.0
1.295ValTrp: 1.295 ± 0.0
2.158ValTyr: 2.158 ± 0.0
0.0ValXaa: 0.0 ± 0.0
Trp
0.432TrpAla: 0.432 ± 0.0
0.216TrpCys: 0.216 ± 0.0
0.863TrpAsp: 0.863 ± 0.0
1.079TrpGlu: 1.079 ± 0.0
1.511TrpPhe: 1.511 ± 0.0
0.647TrpGly: 0.647 ± 0.0
0.432TrpHis: 0.432 ± 0.0
0.647TrpIle: 0.647 ± 0.0
0.863TrpLys: 0.863 ± 0.0
2.805TrpLeu: 2.805 ± 0.0
0.863TrpMet: 0.863 ± 0.0
0.863TrpAsn: 0.863 ± 0.0
0.647TrpPro: 0.647 ± 0.0
1.079TrpGln: 1.079 ± 0.0
1.079TrpArg: 1.079 ± 0.0
1.511TrpSer: 1.511 ± 0.0
1.726TrpThr: 1.726 ± 0.0
1.726TrpVal: 1.726 ± 0.0
0.432TrpTrp: 0.432 ± 0.0
0.647TrpTyr: 0.647 ± 0.0
0.0TrpXaa: 0.0 ± 0.0
Tyr
1.942TyrAla: 1.942 ± 0.0
0.863TyrCys: 0.863 ± 0.0
1.942TyrAsp: 1.942 ± 0.0
1.942TyrGlu: 1.942 ± 0.0
1.295TyrPhe: 1.295 ± 0.0
3.237TyrGly: 3.237 ± 0.0
1.295TyrHis: 1.295 ± 0.0
0.863TyrIle: 0.863 ± 0.0
1.079TyrLys: 1.079 ± 0.0
4.532TyrLeu: 4.532 ± 0.0
0.432TyrMet: 0.432 ± 0.0
0.647TyrAsn: 0.647 ± 0.0
2.59TyrPro: 2.59 ± 0.0
1.079TyrGln: 1.079 ± 0.0
1.942TyrArg: 1.942 ± 0.0
1.079TyrSer: 1.079 ± 0.0
1.079TyrThr: 1.079 ± 0.0
2.59TyrVal: 2.59 ± 0.0
0.432TyrTrp: 0.432 ± 0.0
0.863TyrTyr: 0.863 ± 0.0
0.0TyrXaa: 0.0 ± 0.0
Xaa
0.0XaaAla: 0.0 ± 0.0
0.0XaaCys: 0.0 ± 0.0
0.0XaaAsp: 0.0 ± 0.0
0.0XaaGlu: 0.0 ± 0.0
0.0XaaPhe: 0.0 ± 0.0
0.0XaaGly: 0.0 ± 0.0
0.0XaaHis: 0.0 ± 0.0
0.0XaaIle: 0.0 ± 0.0
0.0XaaLys: 0.0 ± 0.0
0.0XaaLeu: 0.0 ± 0.0
0.0XaaMet: 0.0 ± 0.0
0.0XaaAsn: 0.0 ± 0.0
0.0XaaPro: 0.0 ± 0.0
0.0XaaGln: 0.0 ± 0.0
0.0XaaArg: 0.0 ± 0.0
0.0XaaSer: 0.0 ± 0.0
0.0XaaThr: 0.0 ± 0.0
0.0XaaVal: 0.0 ± 0.0
0.0XaaTrp: 0.0 ± 0.0
0.0XaaTyr: 0.0 ± 0.0
0.0XaaXaa: 0.0 ± 0.0
Statistics based on 1 proteins (4635 amino acids)

Note: The error has been estimated with the bootstraping (x100) at the protein level

Above dipeptide statistics (among other stats for this proteome) you can download from this CSV file
See this proteome in: uniprot_link
Proteome-pI is available under Creative Commons Attribution-NoDerivs license, for more details see here

Reference: Kozlowski LP. Proteome-pI 2.0: Proteome Isoelectric Point Database Update. Nucleic Acids Res. 2021, doi: 10.1093/nar/gkab944 Contact: Lukasz P. Kozlowski