Rivibacter subsaxonicus

Taxonomy: cellular organisms; Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Burkholderiales genera incertae sedis; Rivibacter

Average proteome isoelectric point is 6.98

Get precalculated fractions of proteins

Acidic
pI < 6.8
6.8-7.4
pI > 7.4
Basic
    
All



Virtual 2D-PAGE plot for 3641 proteins (isoelectric point calculated using IPC2_protein)

Get csv file with sequences according to given criteria:
        -     Method 

     -  kDa    
                                                                                      

* You can choose from 21 different methods for calculating isoelectric point

Summary statistics related to proteome-wise predictions


    
Protein with the lowest isoelectric point:
>tr|A0A4Q7VVR3|A0A4Q7VVR3_9BURK Uncharacterized protein OS=Rivibacter subsaxonicus OX=457575 GN=EV670_1479 PE=4 SV=1
MM1 pKa = 7.37QSTSLTRR8 pKa = 11.84AAALIALACLALAGCSGGGDD28 pKa = 3.64YY29 pKa = 8.91EE30 pKa = 4.39QPPPAPVAEE39 pKa = 4.2ATEE42 pKa = 4.36VPISAVASSRR52 pKa = 11.84AFTDD56 pKa = 3.29YY57 pKa = 11.21AAALAPSDD65 pKa = 3.76SAEE68 pKa = 3.93ALGLGALGDD77 pKa = 4.12ASPVDD82 pKa = 4.27DD83 pKa = 4.8SGEE86 pKa = 3.96PLPIGG91 pKa = 3.87

Molecular weight: 8.76 kDa
Isoelectric point according different methods:





Protein with the highest isoelectric point:
>tr|A0A4Q7VW70|A0A4Q7VW70_9BURK Uncharacterized protein OS=Rivibacter subsaxonicus OX=457575 GN=EV670_1670 PE=4 SV=1
MM1 pKa = 7.35KK2 pKa = 9.43RR3 pKa = 11.84TYY5 pKa = 10.07QPSKK9 pKa = 9.07IRR11 pKa = 11.84RR12 pKa = 11.84ARR14 pKa = 11.84THH16 pKa = 5.91GFLVRR21 pKa = 11.84MKK23 pKa = 9.94TRR25 pKa = 11.84GGKK28 pKa = 9.73AVISARR34 pKa = 11.84RR35 pKa = 11.84AKK37 pKa = 9.85GRR39 pKa = 11.84KK40 pKa = 9.07RR41 pKa = 11.84LGLL44 pKa = 3.7

Molecular weight: 5.1 kDa
Isoelectric point according different methods:





Peptides (in silico digests for buttom-up proteomics)

Below you can find in silico digests of the whole proteome with Trypsin, Chymotrypsin, Trypsin+LysC, LysN, ArgC proteases suitable for different mass spec machines.

Try
ESI
ChTry
ESI
ArgC
ESI
LysN
ESI
TryLysC
ESI

Try
MALDI
ChTry
MALDI
ArgC
MALDI
LysN
MALDI
TryLysC
MALDI

Try
LTQ
ChTry
LTQ
ArgC
LTQ
LysN
LTQ
TryLysC
LTQ

Try
MSlow
ChTry
MSlow
ArgC
MSlow
LysN
MSlow
TryLysC
MSlow

Try
MShigh
ChTry
MShigh
ArgC
MShigh
LysN
MShigh
TryLysC
MShigh

General Statistics

Number of major isoforms

Number of additional isoforms

Number of all proteins

Number of amino acids

Min. Seq. Length

Max. Seq. Length

Avg. Seq. Length

Avg. Mol. Weight

3641

0

3641

1204091

29

3433

330.7

35.7

Amino acid frequency

Ala

Cys

Asp

Glu

Phe

Gly

His

Ile

Lys

Leu

13.993 ± 0.066

0.876 ± 0.013

5.124 ± 0.036

5.422 ± 0.038

3.454 ± 0.025

8.632 ± 0.039

2.143 ± 0.02

4.035 ± 0.03

2.845 ± 0.04

11.232 ± 0.056

Met

Asn

Gln

Pro

Arg

Ser

Thr

Val

Trp

Tyr

2.181 ± 0.02

2.301 ± 0.028

5.499 ± 0.034

3.621 ± 0.021

7.515 ± 0.045

5.21 ± 0.03

4.757 ± 0.032

7.55 ± 0.033

1.552 ± 0.02

2.059 ± 0.02
Note: For amino acid frequency statistics the error has been estimated with the bootstraping (x100) at the protein level

Most of the basic statistics you can see at this page can be downloaded from this CSV file

For dipeptide frequency statistics click here
See this proteome in: uniprot_link
Proteome-pI is available under Creative Commons Attribution-NoDerivs license, for more details see here

Reference: Kozlowski LP. Proteome-pI 2.0: Proteome Isoelectric Point Database Update. Nucleic Acids Res. 2021, doi: 10.1093/nar/gkab944 Contact: Lukasz P. Kozlowski