Hyperthermophilic Archaeal Virus 1

Taxonomy: Viruses; unclassified viruses; unclassified DNA viruses; unclassified dsDNA viruses

Average proteome isoelectric point is 7.03

Get precalculated fractions of proteins

Acidic
pI < 6.8
6.8-7.4
pI > 7.4
Basic
    
All



Virtual 2D-PAGE plot for 40 proteins (isoelectric point calculated using IPC2_protein)

Get csv file with sequences according to given criteria:
        -     Method 

     -  kDa    
                                                                                      

* You can choose from 21 different methods for calculating isoelectric point

Summary statistics related to proteome-wise predictions


    
Protein with the lowest isoelectric point:
>tr|D9CGA6|D9CGA6_9VIRU Uncharacterized protein OS=Hyperthermophilic Archaeal Virus 1 OX=762905 GN=HAV1_gp37 PE=4 SV=1
MM1 pKa = 7.27AVVEE5 pKa = 3.99GMYY8 pKa = 10.36YY9 pKa = 11.25GFMAVAAFIGLLLLLLFFASHH30 pKa = 6.72AVLTADD36 pKa = 3.46SMKK39 pKa = 9.68WRR41 pKa = 11.84ALAYY45 pKa = 9.45IVAVFDD51 pKa = 3.17AWFIGAIFGTLSCNEE66 pKa = 3.89VCRR69 pKa = 11.84KK70 pKa = 9.96GGEE73 pKa = 4.17DD74 pKa = 4.94GSAQDD79 pKa = 3.63

Molecular weight: 8.53 kDa
Isoelectric point according different methods:





Protein with the highest isoelectric point:
>tr|D9CGA9|D9CGA9_9VIRU Uncharacterized protein OS=Hyperthermophilic Archaeal Virus 1 OX=762905 GN=HAV1_gp40 PE=4 SV=1
MM1 pKa = 7.19MCRR4 pKa = 11.84INLRR8 pKa = 11.84CFFKK12 pKa = 11.14SLWNLLKK19 pKa = 10.6QVGIFIGMIAAVILLAFAVILAIAAVLWFIYY50 pKa = 9.89FITTLDD56 pKa = 3.51PMILVAVVVAFLAYY70 pKa = 8.76VTIASLFRR78 pKa = 11.84KK79 pKa = 7.5QTT81 pKa = 3.24

Molecular weight: 9.14 kDa
Isoelectric point according different methods:





Peptides (in silico digests for buttom-up proteomics)

Below you can find in silico digests of the whole proteome with Trypsin, Chymotrypsin, Trypsin+LysC, LysN, ArgC proteases suitable for different mass spec machines.

Try
ESI
ChTry
ESI
ArgC
ESI
LysN
ESI
TryLysC
ESI

Try
MALDI
ChTry
MALDI
ArgC
MALDI
LysN
MALDI
TryLysC
MALDI

Try
LTQ
ChTry
LTQ
ArgC
LTQ
LysN
LTQ
TryLysC
LTQ

Try
MSlow
ChTry
MSlow
ArgC
MSlow
LysN
MSlow
TryLysC
MSlow

Try
MShigh
ChTry
MShigh
ArgC
MShigh
LysN
MShigh
TryLysC
MShigh

General Statistics

Number of major isoforms

Number of additional isoforms

Number of all proteins

Number of amino acids

Min. Seq. Length

Max. Seq. Length

Avg. Seq. Length

Avg. Mol. Weight

40

0

40

6403

50

585

160.1

18.21

Amino acid frequency

Ala

Cys

Asp

Glu

Phe

Gly

His

Ile

Lys

Leu

7.528 ± 0.655

1.843 ± 0.223

5.06 ± 0.427

6.091 ± 0.806

4.186 ± 0.284

5.279 ± 0.418

1.203 ± 0.169

7.481 ± 0.533

6.31 ± 0.466

8.324 ± 0.354

Met

Asn

Gln

Pro

Arg

Ser

Thr

Val

Trp

Tyr

2.499 ± 0.246

3.373 ± 0.318

4.529 ± 0.405

2.39 ± 0.265

5.95 ± 0.511

6.95 ± 0.95

5.123 ± 0.349

8.527 ± 0.479

1.609 ± 0.232

5.747 ± 0.372
Note: For amino acid frequency statistics the error has been estimated with the bootstraping (x100) at the protein level

Most of the basic statistics you can see at this page can be downloaded from this CSV file

For dipeptide frequency statistics click here
See this proteome in: uniprot_link
Proteome-pI is available under Creative Commons Attribution-NoDerivs license, for more details see here

Reference: Kozlowski LP. Proteome-pI 2.0: Proteome Isoelectric Point Database Update. Nucleic Acids Res. 2021, doi: 10.1093/nar/gkab944 Contact: Lukasz P. Kozlowski