Capybara microvirus Cap3_SP_581

Taxonomy: Viruses; Monodnaviria; Sangervirae; Phixviricota; Malgrandaviricetes; Petitvirales; Microviridae; unclassified Microviridae

Average proteome isoelectric point is 5.12

Get precalculated fractions of proteins

Acidic
pI < 6.8
6.8-7.4
pI > 7.4
Basic
    
All



Virtual 2D-PAGE plot for 6 proteins (isoelectric point calculated using IPC2_protein)

Get csv file with sequences according to given criteria:
        -     Method 

     -  kDa    
                                                                                      

* You can choose from 21 different methods for calculating isoelectric point

Summary statistics related to proteome-wise predictions


    
Protein with the lowest isoelectric point:
>tr|A0A4V1FVU9|A0A4V1FVU9_9VIRU Uncharacterized protein OS=Capybara microvirus Cap3_SP_581 OX=2585478 PE=4 SV=1
MM1 pKa = 7.58ALYY4 pKa = 10.48ACYY7 pKa = 10.51LDD9 pKa = 4.67DD10 pKa = 5.19NNRR13 pKa = 11.84EE14 pKa = 4.14CMTLIADD21 pKa = 4.28CSTLEE26 pKa = 3.97EE27 pKa = 4.5CLSISLEE34 pKa = 4.15DD35 pKa = 3.39CDD37 pKa = 4.15YY38 pKa = 11.51FNAISGNKK46 pKa = 9.78LKK48 pKa = 10.75VDD50 pKa = 3.65YY51 pKa = 11.06YY52 pKa = 11.21KK53 pKa = 11.13LCFRR57 pKa = 11.84LNRR60 pKa = 11.84SEE62 pKa = 4.46RR63 pKa = 11.84YY64 pKa = 10.02VIII67 pKa = 4.62

Molecular weight: 7.85 kDa
Isoelectric point according different methods:





Protein with the highest isoelectric point:
>tr|A0A4P8W8U9|A0A4P8W8U9_9VIRU Minor capsid protein OS=Capybara microvirus Cap3_SP_581 OX=2585478 PE=4 SV=1
MM1 pKa = 7.5VILDD5 pKa = 3.89DD6 pKa = 3.8VVAVVFVVIVSIAVALGFNCVDD28 pKa = 3.81CFHH31 pKa = 6.79TRR33 pKa = 11.84TIKK36 pKa = 10.83RR37 pKa = 11.84PDD39 pKa = 3.46NGSPMVVPCGNCMACRR55 pKa = 11.84IARR58 pKa = 11.84SRR60 pKa = 11.84EE61 pKa = 3.32WSLRR65 pKa = 11.84LLMEE69 pKa = 5.05LEE71 pKa = 3.91SHH73 pKa = 6.8DD74 pKa = 4.36FKK76 pKa = 11.71GCFITLTYY84 pKa = 10.81DD85 pKa = 4.27DD86 pKa = 4.34EE87 pKa = 5.04HH88 pKa = 8.0LPSDD92 pKa = 3.98YY93 pKa = 11.19GLHH96 pKa = 7.34KK97 pKa = 10.73DD98 pKa = 4.16DD99 pKa = 6.16LKK101 pKa = 11.56NFWKK105 pKa = 10.63RR106 pKa = 11.84LRR108 pKa = 11.84KK109 pKa = 10.1DD110 pKa = 2.96LDD112 pKa = 3.75FKK114 pKa = 10.87IKK116 pKa = 10.58YY117 pKa = 6.86YY118 pKa = 11.17ACGEE122 pKa = 4.11YY123 pKa = 10.53GDD125 pKa = 4.28TYY127 pKa = 11.23GRR129 pKa = 11.84PHH131 pKa = 5.37YY132 pKa = 10.04HH133 pKa = 6.99AIIFGLEE140 pKa = 3.65PDD142 pKa = 3.81DD143 pKa = 3.52FTRR146 pKa = 11.84RR147 pKa = 11.84LLIDD151 pKa = 2.98NWRR154 pKa = 11.84FCSPDD159 pKa = 2.99RR160 pKa = 11.84FNGTKK165 pKa = 9.88QGLADD170 pKa = 3.69VTIDD174 pKa = 3.44SINYY178 pKa = 4.03VTGYY182 pKa = 9.15IQKK185 pKa = 10.33KK186 pKa = 9.43YY187 pKa = 10.91NGDD190 pKa = 3.69LAKK193 pKa = 10.25EE194 pKa = 4.53VYY196 pKa = 10.66GDD198 pKa = 3.81LQPPFSSSSQGLGLEE213 pKa = 4.24TFLKK217 pKa = 9.62NRR219 pKa = 11.84EE220 pKa = 4.05RR221 pKa = 11.84FEE223 pKa = 5.32HH224 pKa = 7.13DD225 pKa = 3.22GFIGYY230 pKa = 9.47QGVQYY235 pKa = 8.56TIPRR239 pKa = 11.84YY240 pKa = 9.2FIKK243 pKa = 10.69KK244 pKa = 9.99LDD246 pKa = 3.85LEE248 pKa = 4.33LSKK251 pKa = 9.85TYY253 pKa = 9.14STQKK257 pKa = 9.49INEE260 pKa = 4.09YY261 pKa = 10.38LEE263 pKa = 4.5KK264 pKa = 11.1NGIDD268 pKa = 3.23PSRR271 pKa = 11.84FVKK274 pKa = 9.61ATSPQFIKK282 pKa = 10.64NVAYY286 pKa = 10.61HH287 pKa = 6.31EE288 pKa = 4.41VADD291 pKa = 3.8PHH293 pKa = 6.67LAIAEE298 pKa = 4.05RR299 pKa = 11.84RR300 pKa = 11.84LLRR303 pKa = 11.84QKK305 pKa = 10.64QLFEE309 pKa = 4.0QDD311 pKa = 2.99KK312 pKa = 11.06LKK314 pKa = 11.17

Molecular weight: 36.39 kDa
Isoelectric point according different methods:





Peptides (in silico digests for buttom-up proteomics)

Below you can find in silico digests of the whole proteome with Trypsin, Chymotrypsin, Trypsin+LysC, LysN, ArgC proteases suitable for different mass spec machines.

Try
ESI
ChTry
ESI
ArgC
ESI
LysN
ESI
TryLysC
ESI

Try
MALDI
ChTry
MALDI
ArgC
MALDI
LysN
MALDI
TryLysC
MALDI

Try
LTQ
ChTry
LTQ
ArgC
LTQ
LysN
LTQ
TryLysC
LTQ

Try
MSlow
ChTry
MSlow
ArgC
MSlow
LysN
MSlow
TryLysC
MSlow

Try
MShigh
ChTry
MShigh
ArgC
MShigh
LysN
MShigh
TryLysC
MShigh

General Statistics

Number of major isoforms

Number of additional isoforms

Number of all proteins

Number of amino acids

Min. Seq. Length

Max. Seq. Length

Avg. Seq. Length

Avg. Mol. Weight

6

0

6

1418

67

559

236.3

26.86

Amino acid frequency

Ala

Cys

Asp

Glu

Phe

Gly

His

Ile

Lys

Leu

6.206 ± 1.375

1.763 ± 0.725

7.123 ± 1.194

6.135 ± 0.718

5.078 ± 0.798

6.135 ± 1.008

2.116 ± 0.289

6.276 ± 0.742

5.783 ± 0.773

8.392 ± 0.585

Met

Asn

Gln

Pro

Arg

Ser

Thr

Val

Trp

Tyr

2.468 ± 0.501

6.841 ± 0.931

3.879 ± 0.78

3.738 ± 0.707

4.725 ± 0.86

7.123 ± 0.888

4.795 ± 0.364

5.571 ± 0.338

1.058 ± 0.347

4.795 ± 0.385
Note: For amino acid frequency statistics the error has been estimated with the bootstraping (x100) at the protein level

Most of the basic statistics you can see at this page can be downloaded from this CSV file

For dipeptide frequency statistics click here
See this proteome in: uniprot_link
Proteome-pI is available under Creative Commons Attribution-NoDerivs license, for more details see here

Reference: Kozlowski LP. Proteome-pI 2.0: Proteome Isoelectric Point Database Update. Nucleic Acids Res. 2021, doi: 10.1093/nar/gkab944 Contact: Lukasz P. Kozlowski