Vibrio sp. JCM 19236

Taxonomy: cellular organisms; Bacteria; Proteobacteria; Gammaproteobacteria; Vibrionales; Vibrionaceae; Vibrio; unclassified Vibrio

Average proteome isoelectric point is 6.12

Get precalculated fractions of proteins

Acidic
pI < 6.8
6.8-7.4
pI > 7.4
Basic
    
All



Virtual 2D-PAGE plot for 6630 proteins (isoelectric point calculated using IPC2_protein)

Get csv file with sequences according to given criteria:
        -     Method 

     -  kDa    
                                                                                      

* You can choose from 21 different methods for calculating isoelectric point

Summary statistics related to proteome-wise predictions


    
Protein with the lowest isoelectric point:
>tr|A0A0B8PPH2|A0A0B8PPH2_9VIBR Multidrug resistance transporter OS=Vibrio sp. JCM 19236 OX=1481926 GN=JCM19236_4054 PE=4 SV=1
MM1 pKa = 7.34ATFGADD7 pKa = 2.87SADD10 pKa = 2.82IVAGNKK16 pKa = 9.71DD17 pKa = 3.13KK18 pKa = 11.14RR19 pKa = 11.84SNNFLYY25 pKa = 10.61AGEE28 pKa = 4.07FGGLNVQANYY38 pKa = 9.69IASDD42 pKa = 3.58EE43 pKa = 4.42KK44 pKa = 11.31DD45 pKa = 3.09ADD47 pKa = 3.86SYY49 pKa = 11.58GISALYY55 pKa = 10.65GFDD58 pKa = 3.66FGLDD62 pKa = 3.25LGLGYY67 pKa = 10.64VGQTNGDD74 pKa = 3.94DD75 pKa = 5.16DD76 pKa = 5.43DD77 pKa = 4.67SQINFAAQYY86 pKa = 10.32SIADD90 pKa = 3.59FTLGGFYY97 pKa = 10.97GLGSVADD104 pKa = 3.83EE105 pKa = 4.43DD106 pKa = 4.4VNAFEE111 pKa = 5.63ISALYY116 pKa = 10.06KK117 pKa = 9.63LNKK120 pKa = 6.76WTFVAVYY127 pKa = 9.89NYY129 pKa = 10.84NDD131 pKa = 3.36VDD133 pKa = 4.06TLIKK137 pKa = 9.6QAKK140 pKa = 7.74TGLDD144 pKa = 3.37EE145 pKa = 4.32VDD147 pKa = 3.35NFAIEE152 pKa = 4.08AVYY155 pKa = 10.5KK156 pKa = 10.83FNGNLRR162 pKa = 11.84TYY164 pKa = 10.76AGYY167 pKa = 10.67KK168 pKa = 9.78FEE170 pKa = 5.15QVDD173 pKa = 3.69NQDD176 pKa = 3.77DD177 pKa = 3.95QIQAGIRR184 pKa = 11.84YY185 pKa = 9.42DD186 pKa = 3.51FF187 pKa = 4.74

Molecular weight: 20.54 kDa
Isoelectric point according different methods:





Protein with the highest isoelectric point:
>tr|A0A0B8Q2P5|A0A0B8Q2P5_9VIBR Cysteine synthase OS=Vibrio sp. JCM 19236 OX=1481926 GN=JCM19236_5357 PE=3 SV=1
MM1 pKa = 7.45KK2 pKa = 9.51RR3 pKa = 11.84TFQPSVLKK11 pKa = 10.49RR12 pKa = 11.84KK13 pKa = 7.97RR14 pKa = 11.84THH16 pKa = 5.89GFRR19 pKa = 11.84ARR21 pKa = 11.84MATKK25 pKa = 10.44NGRR28 pKa = 11.84KK29 pKa = 9.39VINARR34 pKa = 11.84RR35 pKa = 11.84AKK37 pKa = 10.22GRR39 pKa = 11.84ARR41 pKa = 11.84LSKK44 pKa = 10.83

Molecular weight: 5.17 kDa
Isoelectric point according different methods:





Peptides (in silico digests for buttom-up proteomics)

Below you can find in silico digests of the whole proteome with Trypsin, Chymotrypsin, Trypsin+LysC, LysN, ArgC proteases suitable for different mass spec machines.

Try
ESI
ChTry
ESI
ArgC
ESI
LysN
ESI
TryLysC
ESI

Try
MALDI
ChTry
MALDI
ArgC
MALDI
LysN
MALDI
TryLysC
MALDI

Try
LTQ
ChTry
LTQ
ArgC
LTQ
LysN
LTQ
TryLysC
LTQ

Try
MSlow
ChTry
MSlow
ArgC
MSlow
LysN
MSlow
TryLysC
MSlow

Try
MShigh
ChTry
MShigh
ArgC
MShigh
LysN
MShigh
TryLysC
MShigh

General Statistics

Number of major isoforms

Number of additional isoforms

Number of all proteins

Number of amino acids

Min. Seq. Length

Max. Seq. Length

Avg. Seq. Length

Avg. Mol. Weight

6630

0

6630

1336432

37

1917

201.6

22.39

Amino acid frequency

Ala

Cys

Asp

Glu

Phe

Gly

His

Ile

Lys

Leu

8.414 ± 0.036

1.014 ± 0.011

5.551 ± 0.036

6.537 ± 0.035

4.237 ± 0.027

6.936 ± 0.033

2.132 ± 0.018

6.238 ± 0.027

5.337 ± 0.029

10.251 ± 0.043

Met

Asn

Gln

Pro

Arg

Ser

Thr

Val

Trp

Tyr

2.835 ± 0.019

4.184 ± 0.02

3.84 ± 0.021

4.313 ± 0.026

4.352 ± 0.028

6.819 ± 0.031

5.488 ± 0.033

7.168 ± 0.03

1.269 ± 0.013

3.088 ± 0.023
Note: For amino acid frequency statistics the error has been estimated with the bootstraping (x100) at the protein level

Most of the basic statistics you can see at this page can be downloaded from this CSV file

For dipeptide frequency statistics click here
See this proteome in: uniprot_link
Proteome-pI is available under Creative Commons Attribution-NoDerivs license, for more details see here

Reference: Kozlowski LP. Proteome-pI 2.0: Proteome Isoelectric Point Database Update. Nucleic Acids Res. 2021, doi: 10.1093/nar/gkab944 Contact: Lukasz P. Kozlowski