Trichinella sp. T9

Taxonomy: cellular organisms; Eukaryota; Opisthokonta; Metazoa; Eumetazoa; Bilateria; Protostomia; Ecdysozoa; Nematoda; Enoplea; Dorylaimia; Trichinellida; Trichinellidae; Trichinella; unclassified Trichinella

Average proteome isoelectric point is 7.11

Get precalculated fractions of proteins

Acidic
pI < 6.8
6.8-7.4
pI > 7.4
Basic
    
All



Virtual 2D-PAGE plot for 17770 proteins (isoelectric point calculated using IPC2_protein)

Get csv file with sequences according to given criteria:
        -     Method 

     -  kDa    
                                                                                      

* You can choose from 21 different methods for calculating isoelectric point

Summary statistics related to proteome-wise predictions


    
Protein with the lowest isoelectric point:
>tr|A0A0V0V3Z2|A0A0V0V3Z2_9BILA Uncharacterized protein OS=Trichinella sp. T9 OX=181606 GN=T09_5250 PE=4 SV=1
MM1 pKa = 7.31VYY3 pKa = 10.39SSDD6 pKa = 3.53RR7 pKa = 11.84HH8 pKa = 5.25FCLDD12 pKa = 5.16LNFCDD17 pKa = 5.52IDD19 pKa = 3.89ISEE22 pKa = 3.87NWLFFFHH29 pKa = 7.23SYY31 pKa = 11.06PEE33 pKa = 4.24TLSDD37 pKa = 3.99RR38 pKa = 11.84SIDD41 pKa = 3.92SIQLFFLDD49 pKa = 5.84DD50 pKa = 5.76DD51 pKa = 6.14DD52 pKa = 7.86DD53 pKa = 7.56DD54 pKa = 7.65DD55 pKa = 7.67DD56 pKa = 7.33DD57 pKa = 7.61DD58 pKa = 7.18DD59 pKa = 4.99DD60 pKa = 5.5ASHH63 pKa = 7.4AEE65 pKa = 4.12FCHH68 pKa = 5.18SVKK71 pKa = 10.91LIFF74 pKa = 4.92

Molecular weight: 8.78 kDa
Isoelectric point according different methods:





Protein with the highest isoelectric point:
>tr|A0A0V0SNT2|A0A0V0SNT2_9BILA Uncharacterized protein OS=Trichinella sp. T9 OX=181606 GN=T09_15318 PE=4 SV=1
MM1 pKa = 7.32ARR3 pKa = 11.84SARR6 pKa = 11.84SSSRR10 pKa = 11.84SRR12 pKa = 11.84SRR14 pKa = 11.84SSSRR18 pKa = 11.84RR19 pKa = 11.84SMSSRR24 pKa = 11.84RR25 pKa = 11.84GSLTRR30 pKa = 11.84PRR32 pKa = 11.84RR33 pKa = 11.84RR34 pKa = 11.84PISRR38 pKa = 11.84IQTPKK43 pKa = 10.33RR44 pKa = 11.84STRR47 pKa = 11.84QILL50 pKa = 3.35

Molecular weight: 5.83 kDa
Isoelectric point according different methods:





Peptides (in silico digests for buttom-up proteomics)

Below you can find in silico digests of the whole proteome with Trypsin, Chymotrypsin, Trypsin+LysC, LysN, ArgC proteases suitable for different mass spec machines.

Try
ESI
ChTry
ESI
ArgC
ESI
LysN
ESI
TryLysC
ESI

Try
MALDI
ChTry
MALDI
ArgC
MALDI
LysN
MALDI
TryLysC
MALDI

Try
LTQ
ChTry
LTQ
ArgC
LTQ
LysN
LTQ
TryLysC
LTQ

Try
MSlow
ChTry
MSlow
ArgC
MSlow
LysN
MSlow
TryLysC
MSlow

Try
MShigh
ChTry
MShigh
ArgC
MShigh
LysN
MShigh
TryLysC
MShigh

General Statistics

Number of major isoforms

Number of additional isoforms

Number of all proteins

Number of amino acids

Min. Seq. Length

Max. Seq. Length

Avg. Seq. Length

Avg. Mol. Weight

12784

4986

17770

9363422

30

15068

526.9

59.6

Amino acid frequency

Ala

Cys

Asp

Glu

Phe

Gly

His

Ile

Lys

Leu

6.448 ± 0.015

2.648 ± 0.018

5.255 ± 0.015

6.356 ± 0.022

4.574 ± 0.013

4.97 ± 0.019

2.46 ± 0.008

5.579 ± 0.017

5.987 ± 0.018

9.665 ± 0.024

Met

Asn

Gln

Pro

Arg

Ser

Thr

Val

Trp

Tyr

2.394 ± 0.008

5.009 ± 0.012

4.348 ± 0.017

4.298 ± 0.016

5.583 ± 0.018

8.389 ± 0.021

5.277 ± 0.013

6.432 ± 0.014

1.207 ± 0.006

3.113 ± 0.009
Note: For amino acid frequency statistics the error has been estimated with the bootstraping (x100) at the protein level

Most of the basic statistics you can see at this page can be downloaded from this CSV file

For dipeptide frequency statistics click here
See this proteome in: uniprot_link
Proteome-pI is available under Creative Commons Attribution-NoDerivs license, for more details see here

Reference: Kozlowski LP. Proteome-pI 2.0: Proteome Isoelectric Point Database Update. Nucleic Acids Res. 2021, doi: 10.1093/nar/gkab944 Contact: Lukasz P. Kozlowski