Penicillium roqueforti (strain FM164)

Taxonomy: cellular organisms; Eukaryota; Opisthokonta; Fungi; Dikarya; Ascomycota; saccharomyceta; Pezizomycotina; leotiomyceta; Eurotiomycetes; Eurotiomycetidae; Eurotiales; Aspergillaceae; Penicillium; Penicillium roqueforti

Average proteome isoelectric point is 6.52

Get precalculated fractions of proteins

Acidic
pI < 6.8
6.8-7.4
pI > 7.4
Basic
    
All



Virtual 2D-PAGE plot for 12315 proteins (isoelectric point calculated using IPC2_protein)

Get csv file with sequences according to given criteria:
        -     Method 

     -  kDa    
                                                                                      

* You can choose from 21 different methods for calculating isoelectric point

Summary statistics related to proteome-wise predictions


    
Protein with the lowest isoelectric point:
>tr|W6Q1P2|W6Q1P2_PENRF Winged helix-turn-helix transcription repressor DNA-binding OS=Penicillium roqueforti (strain FM164) OX=1365484 GN=PROQFM164_S02g000379 PE=4 SV=1
MM1 pKa = 7.37HH2 pKa = 7.01TQQLLPICGLLLASIAIASKK22 pKa = 10.67LDD24 pKa = 3.69RR25 pKa = 11.84DD26 pKa = 4.25DD27 pKa = 3.63VPNRR31 pKa = 11.84CWPACSSVVGIAKK44 pKa = 10.23SCDD47 pKa = 2.92AKK49 pKa = 10.87YY50 pKa = 10.64EE51 pKa = 4.06RR52 pKa = 11.84DD53 pKa = 3.54SAEE56 pKa = 3.9IQCICDD62 pKa = 2.92WDD64 pKa = 3.86AAKK67 pKa = 10.02TEE69 pKa = 4.24IPLCSACITQYY80 pKa = 9.21QTDD83 pKa = 3.8RR84 pKa = 11.84RR85 pKa = 11.84NHH87 pKa = 6.87NITQHH92 pKa = 7.31DD93 pKa = 4.75DD94 pKa = 4.2DD95 pKa = 6.42NDD97 pKa = 4.98DD98 pKa = 6.3DD99 pKa = 6.89DD100 pKa = 7.56DD101 pKa = 6.87DD102 pKa = 7.12DD103 pKa = 6.52NDD105 pKa = 4.91DD106 pKa = 4.87DD107 pKa = 5.96NEE109 pKa = 4.19ALDD112 pKa = 4.18LVRR115 pKa = 11.84SCSLTTTTYY124 pKa = 10.7SAAATTLIGTSTSTEE139 pKa = 4.11STSTATSSTATITDD153 pKa = 3.46SSSTSGGSQDD163 pKa = 3.33STSSVSSGSSDD174 pKa = 3.26SAGASSGSASSPTPTPDD191 pKa = 2.96AAASISAPGATSMLGFMGLMAFAWLL216 pKa = 3.69

Molecular weight: 22.33 kDa
Isoelectric point according different methods:





Protein with the highest isoelectric point:
>tr|W6PR31|W6PR31_PENRF Probable transposable element OS=Penicillium roqueforti (strain FM164) OX=1365484 GN=PROQFM164_S01g000010 PE=4 SV=1
MM1 pKa = 7.84LDD3 pKa = 3.5LAAARR8 pKa = 11.84SIPRR12 pKa = 11.84AAKK15 pKa = 8.72PKK17 pKa = 8.31PVRR20 pKa = 11.84RR21 pKa = 11.84KK22 pKa = 9.33RR23 pKa = 11.84ARR25 pKa = 11.84SPAPRR30 pKa = 11.84RR31 pKa = 11.84SQRR34 pKa = 11.84RR35 pKa = 11.84RR36 pKa = 11.84RR37 pKa = 11.84II38 pKa = 3.4

Molecular weight: 4.45 kDa
Isoelectric point according different methods:





Peptides (in silico digests for buttom-up proteomics)

Below you can find in silico digests of the whole proteome with Trypsin, Chymotrypsin, Trypsin+LysC, LysN, ArgC proteases suitable for different mass spec machines.

Try
ESI
ChTry
ESI
ArgC
ESI
LysN
ESI
TryLysC
ESI

Try
MALDI
ChTry
MALDI
ArgC
MALDI
LysN
MALDI
TryLysC
MALDI

Try
LTQ
ChTry
LTQ
ArgC
LTQ
LysN
LTQ
TryLysC
LTQ

Try
MSlow
ChTry
MSlow
ArgC
MSlow
LysN
MSlow
TryLysC
MSlow

Try
MShigh
ChTry
MShigh
ArgC
MShigh
LysN
MShigh
TryLysC
MShigh

General Statistics

Number of major isoforms

Number of additional isoforms

Number of all proteins

Number of amino acids

Min. Seq. Length

Max. Seq. Length

Avg. Seq. Length

Avg. Mol. Weight

12315

0

12315

5087075

22

6389

413.1

45.83

Amino acid frequency

Ala

Cys

Asp

Glu

Phe

Gly

His

Ile

Lys

Leu

8.237 ± 0.021

1.291 ± 0.01

5.661 ± 0.014

6.111 ± 0.023

3.804 ± 0.017

6.642 ± 0.022

2.45 ± 0.01

5.186 ± 0.017

4.651 ± 0.019

9.003 ± 0.024

Met

Asn

Gln

Pro

Arg

Ser

Thr

Val

Trp

Tyr

2.26 ± 0.009

3.757 ± 0.012

6.054 ± 0.023

4.035 ± 0.016

6.089 ± 0.02

8.449 ± 0.029

5.965 ± 0.019

6.062 ± 0.016

1.475 ± 0.009

2.817 ± 0.014
Note: For amino acid frequency statistics the error has been estimated with the bootstraping (x100) at the protein level

Most of the basic statistics you can see at this page can be downloaded from this CSV file

For dipeptide frequency statistics click here
See this proteome in: uniprot_link
Proteome-pI is available under Creative Commons Attribution-NoDerivs license, for more details see here

Reference: Kozlowski LP. Proteome-pI 2.0: Proteome Isoelectric Point Database Update. Nucleic Acids Res. 2021, doi: 10.1093/nar/gkab944 Contact: Lukasz P. Kozlowski