Simian immunodeficiency virus - agm.tan-1

Taxonomy: Viruses; Riboviria; Pararnavirae; Artverviricota; Revtraviricetes; Ortervirales; Retroviridae; Orthoretrovirinae; Lentivirus; Simian immunodeficiency virus; Simian immunodeficiency virus - agm; Simian immunodeficiency virus - agm.tan

Average proteome isoelectric point is 7.53

Get precalculated fractions of proteins

Acidic
pI < 6.8
6.8-7.4
pI > 7.4
Basic
    
All



Virtual 2D-PAGE plot for 7 proteins (isoelectric point calculated using IPC2_protein)

Get csv file with sequences according to given criteria:
        -     Method 

     -  kDa    
                                                                                      

* You can choose from 21 different methods for calculating isoelectric point

Summary statistics related to proteome-wise predictions


    
Protein with the lowest isoelectric point:
>tr|P89907|P89907_SIVTA Protein Tat OS=Simian immunodeficiency virus - agm.tan-1 OX=349975 GN=tat PE=3 SV=1
MM1 pKa = 7.99AEE3 pKa = 4.05GRR5 pKa = 11.84DD6 pKa = 3.6SRR8 pKa = 11.84EE9 pKa = 3.75RR10 pKa = 11.84RR11 pKa = 11.84PGWLEE16 pKa = 3.13IWDD19 pKa = 4.36LSRR22 pKa = 11.84EE23 pKa = 4.18PWDD26 pKa = 3.46EE27 pKa = 3.77

Molecular weight: 3.37 kDa
Isoelectric point according different methods:





Protein with the highest isoelectric point:
>tr|P89909|P89909_SIVTA Envelope glycoprotein gp160 OS=Simian immunodeficiency virus - agm.tan-1 OX=349975 GN=env PE=4 SV=2
MM1 pKa = 7.42SLGSEE6 pKa = 4.06DD7 pKa = 3.92LRR9 pKa = 11.84RR10 pKa = 11.84IIQIIRR16 pKa = 11.84ILYY19 pKa = 9.81HH20 pKa = 6.23SNQYY24 pKa = 10.23PPGEE28 pKa = 3.96GTARR32 pKa = 11.84QRR34 pKa = 11.84RR35 pKa = 11.84RR36 pKa = 11.84RR37 pKa = 11.84RR38 pKa = 11.84QRR40 pKa = 11.84FQQQQRR46 pKa = 11.84QVAALSEE53 pKa = 4.57RR54 pKa = 11.84IFIAQQRR61 pKa = 11.84RR62 pKa = 11.84DD63 pKa = 3.63PSGGEE68 pKa = 3.84SLAAAFDD75 pKa = 3.73QLVLDD80 pKa = 4.07NQQLVIEE87 pKa = 4.64TLPDD91 pKa = 4.06PPQEE95 pKa = 4.13PHH97 pKa = 7.16DD98 pKa = 4.58SSSTAA103 pKa = 3.19

Molecular weight: 11.84 kDa
Isoelectric point according different methods:





Peptides (in silico digests for buttom-up proteomics)

Below you can find in silico digests of the whole proteome with Trypsin, Chymotrypsin, Trypsin+LysC, LysN, ArgC proteases suitable for different mass spec machines.

Try
ESI
ChTry
ESI
ArgC
ESI
LysN
ESI
TryLysC
ESI

Try
MALDI
ChTry
MALDI
ArgC
MALDI
LysN
MALDI
TryLysC
MALDI

Try
LTQ
ChTry
LTQ
ArgC
LTQ
LysN
LTQ
TryLysC
LTQ

Try
MSlow
ChTry
MSlow
ArgC
MSlow
LysN
MSlow
TryLysC
MSlow

Try
MShigh
ChTry
MShigh
ArgC
MShigh
LysN
MShigh
TryLysC
MShigh

General Statistics

Number of major isoforms

Number of additional isoforms

Number of all proteins

Number of amino acids

Min. Seq. Length

Max. Seq. Length

Avg. Seq. Length

Avg. Mol. Weight

7

0

7

2922

27

1067

417.4

47.47

Amino acid frequency

Ala

Cys

Asp

Glu

Phe

Gly

His

Ile

Lys

Leu

6.126 ± 0.368

2.43 ± 0.515

3.97 ± 0.41

6.776 ± 0.472

2.875 ± 0.153

7.495 ± 0.792

1.951 ± 0.248

5.852 ± 0.854

6.947 ± 0.78

8.385 ± 0.312

Met

Asn

Gln

Pro

Arg

Ser

Thr

Val

Trp

Tyr

2.053 ± 0.163

4.62 ± 0.661

5.373 ± 0.647

6.468 ± 0.596

5.955 ± 0.647

5.236 ± 0.728

5.989 ± 0.884

5.578 ± 0.346

3.114 ± 0.495

2.806 ± 0.333
Note: For amino acid frequency statistics the error has been estimated with the bootstraping (x100) at the protein level

Most of the basic statistics you can see at this page can be downloaded from this CSV file

For dipeptide frequency statistics click here
See this proteome in: uniprot_link
Proteome-pI is available under Creative Commons Attribution-NoDerivs license, for more details see here

Reference: Kozlowski LP. Proteome-pI 2.0: Proteome Isoelectric Point Database Update. Nucleic Acids Res. 2021, doi: 10.1093/nar/gkab944 Contact: Lukasz P. Kozlowski