Bettongia penicillata papillomavirus 1

Taxonomy: Viruses; Monodnaviria; Shotokuvirae; Cossaviricota; Papovaviricetes; Zurhausenvirales; Papillomaviridae; Firstpapillomavirinae; Dyolambdapapillomavirus; Dyolambdapapillomavirus 1

Average proteome isoelectric point is 5.46

Get precalculated fractions of proteins

Acidic
pI < 6.8
6.8-7.4
pI > 7.4
Basic
    
All



Virtual 2D-PAGE plot for 7 proteins (isoelectric point calculated using IPC2_protein)

Get csv file with sequences according to given criteria:
        -     Method 

     -  kDa    
                                                                                      

* You can choose from 21 different methods for calculating isoelectric point

Summary statistics related to proteome-wise predictions


    
Protein with the lowest isoelectric point:
>tr|D6N1C0|D6N1C0_9PAPI Replication protein E1 OS=Bettongia penicillata papillomavirus 1 OX=759701 GN=E1 PE=3 SV=1
MM1 pKa = 7.76IGDD4 pKa = 5.04RR5 pKa = 11.84IDD7 pKa = 4.05LKK9 pKa = 11.27DD10 pKa = 3.58IVLQLDD16 pKa = 3.62QVVPTSEE23 pKa = 4.33EE24 pKa = 3.87EE25 pKa = 4.16STTGDD30 pKa = 3.5EE31 pKa = 4.7VEE33 pKa = 4.16HH34 pKa = 6.7RR35 pKa = 11.84PYY37 pKa = 10.71KK38 pKa = 10.56YY39 pKa = 10.31YY40 pKa = 10.95DD41 pKa = 3.51VTVSCATCSRR51 pKa = 11.84RR52 pKa = 11.84ISFCILANPEE62 pKa = 4.17TVSGFFNYY70 pKa = 9.47FFEE73 pKa = 4.78DD74 pKa = 3.46VRR76 pKa = 11.84PVCLPCVQKK85 pKa = 11.35GEE87 pKa = 4.14NGQQ90 pKa = 3.41

Molecular weight: 10.21 kDa
Isoelectric point according different methods:





Protein with the highest isoelectric point:
>tr|D6N1C2|D6N1C2_9PAPI E4 (Fragment) OS=Bettongia penicillata papillomavirus 1 OX=759701 PE=4 SV=1
MM1 pKa = 7.0EE2 pKa = 4.65TLTARR7 pKa = 11.84FDD9 pKa = 3.75AVQGKK14 pKa = 9.99LMDD17 pKa = 4.59LFEE20 pKa = 6.07KK21 pKa = 10.64DD22 pKa = 3.25SNDD25 pKa = 3.33IVDD28 pKa = 3.65HH29 pKa = 6.28CEE31 pKa = 3.5YY32 pKa = 10.28WSLIRR37 pKa = 11.84QEE39 pKa = 4.38NIMMNFGRR47 pKa = 11.84KK48 pKa = 9.09KK49 pKa = 9.4GLKK52 pKa = 9.44TIGLQPLPLSAVSEE66 pKa = 4.32AQAKK70 pKa = 9.31IAIEE74 pKa = 3.92MEE76 pKa = 4.39LVVKK80 pKa = 8.06TLKK83 pKa = 10.57NSPFGDD89 pKa = 4.04EE90 pKa = 4.23KK91 pKa = 10.29WTFSDD96 pKa = 3.35TSYY99 pKa = 9.58EE100 pKa = 4.43TYY102 pKa = 10.45VSPPQRR108 pKa = 11.84CFKK111 pKa = 10.4KK112 pKa = 10.51LPYY115 pKa = 9.67LVKK118 pKa = 10.33IKK120 pKa = 10.46HH121 pKa = 6.13GPNMDD126 pKa = 3.53NVDD129 pKa = 3.93VYY131 pKa = 10.53TGWGKK136 pKa = 10.1IYY138 pKa = 10.61KK139 pKa = 9.39QDD141 pKa = 3.84CQGEE145 pKa = 4.44WTVVTGEE152 pKa = 4.17TDD154 pKa = 3.06EE155 pKa = 4.51TGCFYY160 pKa = 11.38VEE162 pKa = 4.95DD163 pKa = 4.09DD164 pKa = 3.77CKK166 pKa = 11.17VYY168 pKa = 11.25YY169 pKa = 10.29KK170 pKa = 11.01VFDD173 pKa = 4.19IDD175 pKa = 3.54SHH177 pKa = 7.82NYY179 pKa = 10.86DD180 pKa = 3.38MTFKK184 pKa = 10.91HH185 pKa = 6.38PLNSDD190 pKa = 4.14FVRR193 pKa = 11.84KK194 pKa = 5.96THH196 pKa = 6.9RR197 pKa = 11.84GRR199 pKa = 11.84GQGEE203 pKa = 4.1QDD205 pKa = 3.7STPQTPSSQPEE216 pKa = 3.77RR217 pKa = 11.84TKK219 pKa = 10.73EE220 pKa = 3.86RR221 pKa = 11.84KK222 pKa = 7.15TGPRR226 pKa = 11.84VRR228 pKa = 11.84TSGTYY233 pKa = 8.47TPPVGPLGGAQPIPSSAPKK252 pKa = 8.32EE253 pKa = 4.67TPDD256 pKa = 3.55GAHH259 pKa = 7.02PGGGGVPRR267 pKa = 11.84GVGGRR272 pKa = 11.84CDD274 pKa = 3.42QPGGSGGPRR283 pKa = 11.84KK284 pKa = 9.68RR285 pKa = 11.84AWEE288 pKa = 3.93EE289 pKa = 3.77GGGGGEE295 pKa = 4.19EE296 pKa = 4.5EE297 pKa = 4.36EE298 pKa = 5.02GEE300 pKa = 4.46APRR303 pKa = 11.84TSKK306 pKa = 10.73KK307 pKa = 9.91PAGGTDD313 pKa = 3.26RR314 pKa = 11.84PLEE317 pKa = 4.34GQTGGRR323 pKa = 11.84PGEE326 pKa = 4.34VTSTTQRR333 pKa = 11.84DD334 pKa = 3.91CRR336 pKa = 11.84EE337 pKa = 4.44GPSSCPVTCPVTCPEE352 pKa = 4.17TSCPVTSCPVTSPEE366 pKa = 4.17TQCPVTQCPVLLAQGDD382 pKa = 4.23ANILKK387 pKa = 9.31CWRR390 pKa = 11.84YY391 pKa = 9.91RR392 pKa = 11.84LEE394 pKa = 4.29TKK396 pKa = 10.41HH397 pKa = 6.45KK398 pKa = 9.12STYY401 pKa = 10.22KK402 pKa = 10.28HH403 pKa = 6.83ISSTWYY409 pKa = 5.34WTAGGRR415 pKa = 11.84GQGKK419 pKa = 8.64HH420 pKa = 5.54RR421 pKa = 11.84MLIAFDD427 pKa = 3.82SAQQEE432 pKa = 4.26KK433 pKa = 11.21DD434 pKa = 3.41FLLLKK439 pKa = 10.1LPKK442 pKa = 10.33GVFVSKK448 pKa = 10.55GWFQNLL454 pKa = 3.01

Molecular weight: 50.07 kDa
Isoelectric point according different methods:





Peptides (in silico digests for buttom-up proteomics)

Below you can find in silico digests of the whole proteome with Trypsin, Chymotrypsin, Trypsin+LysC, LysN, ArgC proteases suitable for different mass spec machines.

Try
ESI
ChTry
ESI
ArgC
ESI
LysN
ESI
TryLysC
ESI

Try
MALDI
ChTry
MALDI
ArgC
MALDI
LysN
MALDI
TryLysC
MALDI

Try
LTQ
ChTry
LTQ
ArgC
LTQ
LysN
LTQ
TryLysC
LTQ

Try
MSlow
ChTry
MSlow
ArgC
MSlow
LysN
MSlow
TryLysC
MSlow

Try
MShigh
ChTry
MShigh
ArgC
MShigh
LysN
MShigh
TryLysC
MShigh

General Statistics

Number of major isoforms

Number of additional isoforms

Number of all proteins

Number of amino acids

Min. Seq. Length

Max. Seq. Length

Avg. Seq. Length

Avg. Mol. Weight

7

0

7

2475

90

596

353.6

39.69

Amino acid frequency

Ala

Cys

Asp

Glu

Phe

Gly

His

Ile

Lys

Leu

4.485 ± 0.466

2.626 ± 0.804

6.545 ± 0.265

7.111 ± 0.729

4.485 ± 0.443

7.232 ± 1.012

1.778 ± 0.151

4.121 ± 0.261

5.98 ± 0.94

7.879 ± 0.887

Met

Asn

Gln

Pro

Arg

Ser

Thr

Val

Trp

Tyr

1.374 ± 0.293

4.121 ± 0.825

7.798 ± 1.375

3.96 ± 0.433

5.939 ± 0.623

7.273 ± 0.651

6.263 ± 0.562

6.626 ± 0.643

1.455 ± 0.289

2.949 ± 0.437
Note: For amino acid frequency statistics the error has been estimated with the bootstraping (x100) at the protein level

Most of the basic statistics you can see at this page can be downloaded from this CSV file

For dipeptide frequency statistics click here
See this proteome in: uniprot_link
Proteome-pI is available under Creative Commons Attribution-NoDerivs license, for more details see here

Reference: Kozlowski LP. Proteome-pI 2.0: Proteome Isoelectric Point Database Update. Nucleic Acids Res. 2021, doi: 10.1093/nar/gkab944 Contact: Lukasz P. Kozlowski