Ornithinimicrobium sp. CNJ-824

Taxonomy: cellular organisms; Bacteria; Terrabacteria group; Actinobacteria; Actinomycetia; Micrococcales; Ornithinimicrobiaceae; Ornithinimicrobium; unclassified Ornithinimicrobium

Average proteome isoelectric point is 6.16

Get precalculated fractions of proteins

Acidic
pI < 6.8
6.8-7.4
pI > 7.4
Basic
    
All



Virtual 2D-PAGE plot for 2650 proteins (isoelectric point calculated using IPC2_protein)

Get csv file with sequences according to given criteria:
        -     Method 

     -  kDa    
                                                                                      

* You can choose from 21 different methods for calculating isoelectric point

Summary statistics related to proteome-wise predictions


    
Protein with the lowest isoelectric point:
>tr|A0A1U7MS04|A0A1U7MS04_9MICO Sugar ABC transporter substrate-binding protein OS=Ornithinimicrobium sp. CNJ-824 OX=1904966 GN=BJF81_13485 PE=4 SV=1
MM1 pKa = 7.63KK2 pKa = 9.78STGRR6 pKa = 11.84GAFVASLAALALGLSACGSDD26 pKa = 3.41NGDD29 pKa = 3.4GGGGGDD35 pKa = 3.49AGGDD39 pKa = 3.15SGEE42 pKa = 4.29PIKK45 pKa = 11.16VGMIADD51 pKa = 4.16LTGATGDD58 pKa = 3.17VGAPYY63 pKa = 10.58NEE65 pKa = 3.83GMLAYY70 pKa = 10.42VDD72 pKa = 3.55WRR74 pKa = 11.84NEE76 pKa = 3.82NGGVADD82 pKa = 4.93RR83 pKa = 11.84EE84 pKa = 4.16IEE86 pKa = 4.81AISNDD91 pKa = 3.22YY92 pKa = 10.8AYY94 pKa = 9.43EE95 pKa = 4.23VPQAEE100 pKa = 4.38QLYY103 pKa = 9.7KK104 pKa = 10.59QYY106 pKa = 11.4LNDD109 pKa = 3.44GVVAVQGWGTGDD121 pKa = 3.33TEE123 pKa = 4.26ALHH126 pKa = 6.23TKK128 pKa = 10.0VADD131 pKa = 3.91DD132 pKa = 4.63EE133 pKa = 4.8LPFMSGSFAEE143 pKa = 4.45SLTDD147 pKa = 4.28PEE149 pKa = 3.97EE150 pKa = 4.24APYY153 pKa = 11.02NFVVAPTYY161 pKa = 10.37SDD163 pKa = 3.4QMRR166 pKa = 11.84VALNWIAEE174 pKa = 4.13DD175 pKa = 3.47SGGGAEE181 pKa = 4.14VAVFHH186 pKa = 7.1HH187 pKa = 7.22DD188 pKa = 3.63SPFGQAPVADD198 pKa = 4.06GEE200 pKa = 4.48AWVSEE205 pKa = 4.11EE206 pKa = 4.49GLDD209 pKa = 5.07LGYY212 pKa = 10.16QAYY215 pKa = 10.4AMPGGQQNYY224 pKa = 10.16VGLLSQAQSQGAEE237 pKa = 3.95YY238 pKa = 10.32IVIQNVASPAAQVAKK253 pKa = 10.65DD254 pKa = 3.33IAAQNLDD261 pKa = 3.57MKK263 pKa = 10.33IVCLNWCGNEE273 pKa = 4.08LFIDD277 pKa = 3.69TAGADD282 pKa = 3.56VAEE285 pKa = 4.38GHH287 pKa = 6.41MLVQPFAPITSEE299 pKa = 4.16KK300 pKa = 10.45AGHH303 pKa = 6.16EE304 pKa = 4.1EE305 pKa = 3.45MTAYY309 pKa = 10.7LEE311 pKa = 4.3EE312 pKa = 4.29QGEE315 pKa = 4.44DD316 pKa = 3.46PASKK320 pKa = 8.92GTSWVQGWMVMHH332 pKa = 6.26VMAEE336 pKa = 4.11GMEE339 pKa = 4.19KK340 pKa = 10.26AAEE343 pKa = 4.55DD344 pKa = 4.42GEE346 pKa = 4.58ITGPAIRR353 pKa = 11.84EE354 pKa = 4.02ALEE357 pKa = 3.9TMGAIDD363 pKa = 3.5TGGVIGEE370 pKa = 4.35GNIEE374 pKa = 4.31FSADD378 pKa = 3.05SHH380 pKa = 6.85RR381 pKa = 11.84GSTSTGIYY389 pKa = 7.65TAEE392 pKa = 4.23GGEE395 pKa = 4.18MVEE398 pKa = 4.54VEE400 pKa = 4.95AGATPP405 pKa = 3.93

Molecular weight: 42.15 kDa
Isoelectric point according different methods:





Protein with the highest isoelectric point:
>tr|A0A1U7MN07|A0A1U7MN07_9MICO Uncharacterized protein OS=Ornithinimicrobium sp. CNJ-824 OX=1904966 GN=BJF81_07780 PE=4 SV=1
MM1 pKa = 7.69SKK3 pKa = 9.0RR4 pKa = 11.84TFQPNNRR11 pKa = 11.84RR12 pKa = 11.84RR13 pKa = 11.84ARR15 pKa = 11.84KK16 pKa = 8.65HH17 pKa = 4.47GFRR20 pKa = 11.84LRR22 pKa = 11.84MRR24 pKa = 11.84TRR26 pKa = 11.84AGRR29 pKa = 11.84AILASRR35 pKa = 11.84RR36 pKa = 11.84AKK38 pKa = 10.41GRR40 pKa = 11.84SSLSAA45 pKa = 3.62

Molecular weight: 5.27 kDa
Isoelectric point according different methods:





Peptides (in silico digests for buttom-up proteomics)

Below you can find in silico digests of the whole proteome with Trypsin, Chymotrypsin, Trypsin+LysC, LysN, ArgC proteases suitable for different mass spec machines.

Try
ESI
ChTry
ESI
ArgC
ESI
LysN
ESI
TryLysC
ESI

Try
MALDI
ChTry
MALDI
ArgC
MALDI
LysN
MALDI
TryLysC
MALDI

Try
LTQ
ChTry
LTQ
ArgC
LTQ
LysN
LTQ
TryLysC
LTQ

Try
MSlow
ChTry
MSlow
ArgC
MSlow
LysN
MSlow
TryLysC
MSlow

Try
MShigh
ChTry
MShigh
ArgC
MShigh
LysN
MShigh
TryLysC
MShigh

General Statistics

Number of major isoforms

Number of additional isoforms

Number of all proteins

Number of amino acids

Min. Seq. Length

Max. Seq. Length

Avg. Seq. Length

Avg. Mol. Weight

2650

0

2650

792233

37

1914

299.0

31.99

Amino acid frequency

Ala

Cys

Asp

Glu

Phe

Gly

His

Ile

Lys

Leu

12.989 ± 0.063

0.658 ± 0.015

6.403 ± 0.044

6.071 ± 0.046

2.408 ± 0.028

9.681 ± 0.052

2.321 ± 0.026

2.657 ± 0.031

1.362 ± 0.028

10.612 ± 0.058

Met

Asn

Gln

Pro

Arg

Ser

Thr

Val

Trp

Tyr

1.888 ± 0.021

1.359 ± 0.021

6.033 ± 0.04

2.944 ± 0.026

8.321 ± 0.048

4.75 ± 0.03

6.08 ± 0.039

10.084 ± 0.05

1.654 ± 0.022

1.723 ± 0.021
Note: For amino acid frequency statistics the error has been estimated with the bootstraping (x100) at the protein level

Most of the basic statistics you can see at this page can be downloaded from this CSV file

For dipeptide frequency statistics click here
See this proteome in: uniprot_link
Proteome-pI is available under Creative Commons Attribution-NoDerivs license, for more details see here

Reference: Kozlowski LP. Proteome-pI 2.0: Proteome Isoelectric Point Database Update. Nucleic Acids Res. 2021, doi: 10.1093/nar/gkab944 Contact: Lukasz P. Kozlowski