Amino acid dipepetide frequency for Beijerinckia indica subsp. indica (strain ATCC 9039 / DSM 1715 / NCIMB 8712)

Apart from single amino acid frequencies one can also calculate so called amino acid dipeptide frequency.

There is 400 possibilites (441 if we consider Xaa as additional 21st amino acid representing all non-standard or unknown amino acids). Thus, if the dipeptides would be present randomly in proteins each amino acid dipeptide should be present with 0.25% frequency. As it is not the case in the nature, for better visablity all more than expected dipepetides are marked by red, and those which are underrepresented are marked by blue in the table.

All values are presented as per milles (‰), therefore need to be multiplied by 10^-3.

For more information see sequence space article on Wikipedia.

	Ala	Cys	Asp	Glu	Phe	Gly	His	Ile	Lys	Leu	Met	Asn	Pro	Gln	Arg	Ser	Thr	Val	Trp	Tyr	Xaa
Ala	14.7AlaAla: 14.7 ± 0.171	1.114AlaCys: 1.114 ± 0.033	6.003AlaAsp: 6.003 ± 0.074	7.172AlaGlu: 7.172 ± 0.09	4.658AlaPhe: 4.658 ± 0.068	9.075AlaGly: 9.075 ± 0.103	2.486AlaHis: 2.486 ± 0.05	6.481AlaIle: 6.481 ± 0.076	4.497AlaLys: 4.497 ± 0.068	13.288AlaLeu: 13.288 ± 0.158	2.983AlaMet: 2.983 ± 0.052	3.046AlaAsn: 3.046 ± 0.052	5.489AlaPro: 5.489 ± 0.091	4.25AlaGln: 4.25 ± 0.062	7.968AlaArg: 7.968 ± 0.107	6.781AlaSer: 6.781 ± 0.087	5.856AlaThr: 5.856 ± 0.069	7.331AlaVal: 7.331 ± 0.089	1.407AlaTrp: 1.407 ± 0.036	2.607AlaTyr: 2.607 ± 0.055	0.0AlaXaa: 0.0 ± 0.0
Cys	1.027CysAla: 1.027 ± 0.027	0.129CysCys: 0.129 ± 0.01	0.554CysAsp: 0.554 ± 0.025	0.485CysGlu: 0.485 ± 0.022	0.365CysPhe: 0.365 ± 0.02	0.915CysGly: 0.915 ± 0.027	0.238CysHis: 0.238 ± 0.015	0.423CysIle: 0.423 ± 0.021	0.236CysLys: 0.236 ± 0.013	0.985CysLeu: 0.985 ± 0.029	0.176CysMet: 0.176 ± 0.013	0.222CysAsn: 0.222 ± 0.015	0.471CysPro: 0.471 ± 0.023	0.265CysGln: 0.265 ± 0.015	0.592CysArg: 0.592 ± 0.023	0.481CysSer: 0.481 ± 0.021	0.411CysThr: 0.411 ± 0.019	0.589CysVal: 0.589 ± 0.019	0.114CysTrp: 0.114 ± 0.01	0.206CysTyr: 0.206 ± 0.011	0.0CysXaa: 0.0 ± 0.0
Asp	5.936AspAla: 5.936 ± 0.073	0.485AspCys: 0.485 ± 0.021	2.704AspAsp: 2.704 ± 0.052	3.168AspGlu: 3.168 ± 0.062	2.311AspPhe: 2.311 ± 0.049	4.314AspGly: 4.314 ± 0.069	1.538AspHis: 1.538 ± 0.039	3.138AspIle: 3.138 ± 0.047	2.005AspLys: 2.005 ± 0.042	6.425AspLeu: 6.425 ± 0.083	1.169AspMet: 1.169 ± 0.033	1.395AspAsn: 1.395 ± 0.038	3.446AspPro: 3.446 ± 0.05	1.939AspGln: 1.939 ± 0.035	3.703AspArg: 3.703 ± 0.05	2.159AspSer: 2.159 ± 0.052	2.386AspThr: 2.386 ± 0.056	3.692AspVal: 3.692 ± 0.057	0.883AspTrp: 0.883 ± 0.027	1.64AspTyr: 1.64 ± 0.041	0.0AspXaa: 0.0 ± 0.0
Glu	8.017GluAla: 8.017 ± 0.099	0.378GluCys: 0.378 ± 0.017	2.855GluAsp: 2.855 ± 0.051	3.445GluGlu: 3.445 ± 0.071	1.553GluPhe: 1.553 ± 0.04	4.225GluGly: 4.225 ± 0.064	1.282GluHis: 1.282 ± 0.034	3.761GluIle: 3.761 ± 0.054	2.727GluLys: 2.727 ± 0.055	4.69GluLeu: 4.69 ± 0.072	1.265GluMet: 1.265 ± 0.034	1.763GluAsn: 1.763 ± 0.04	2.748GluPro: 2.748 ± 0.058	2.153GluGln: 2.153 ± 0.041	4.504GluArg: 4.504 ± 0.072	2.564GluSer: 2.564 ± 0.054	4.077GluThr: 4.077 ± 0.069	3.353GluVal: 3.353 ± 0.06	0.688GluTrp: 0.688 ± 0.023	0.89GluTyr: 0.89 ± 0.03	0.0GluXaa: 0.0 ± 0.0
Phe	4.569PheAla: 4.569 ± 0.067	0.48PheCys: 0.48 ± 0.021	2.704PheAsp: 2.704 ± 0.051	2.227PheGlu: 2.227 ± 0.047	1.68PhePhe: 1.68 ± 0.043	3.716PheGly: 3.716 ± 0.061	0.854PheHis: 0.854 ± 0.027	2.057PheIle: 2.057 ± 0.05	1.192PheLys: 1.192 ± 0.031	4.091PheLeu: 4.091 ± 0.072	0.836PheMet: 0.836 ± 0.024	1.173PheAsn: 1.173 ± 0.034	1.773PhePro: 1.773 ± 0.046	1.159PheGln: 1.159 ± 0.033	2.087PheArg: 2.087 ± 0.041	2.665PheSer: 2.665 ± 0.049	2.224PheThr: 2.224 ± 0.046	2.886PheVal: 2.886 ± 0.052	0.567PheTrp: 0.567 ± 0.025	1.056PheTyr: 1.056 ± 0.032	0.0PheXaa: 0.0 ± 0.0
Gly	8.199GlyAla: 8.199 ± 0.091	0.841GlyCys: 0.841 ± 0.027	3.86GlyAsp: 3.86 ± 0.06	4.291GlyGlu: 4.291 ± 0.063	3.728GlyPhe: 3.728 ± 0.062	6.487GlyGly: 6.487 ± 0.135	2.036GlyHis: 2.036 ± 0.046	4.516GlyIle: 4.516 ± 0.067	3.366GlyLys: 3.366 ± 0.062	9.289GlyLeu: 9.289 ± 0.091	1.958GlyMet: 1.958 ± 0.047	2.095GlyAsn: 2.095 ± 0.06	3.42GlyPro: 3.42 ± 0.055	2.87GlyGln: 2.87 ± 0.055	5.416GlyArg: 5.416 ± 0.084	4.524GlySer: 4.524 ± 0.073	4.65GlyThr: 4.65 ± 0.082	5.343GlyVal: 5.343 ± 0.067	1.259GlyTrp: 1.259 ± 0.039	2.122GlyTyr: 2.122 ± 0.05	0.0GlyXaa: 0.0 ± 0.0
His	2.568HisAla: 2.568 ± 0.051	0.263HisCys: 0.263 ± 0.017	1.295HisAsp: 1.295 ± 0.039	1.289HisGlu: 1.289 ± 0.034	1.112HisPhe: 1.112 ± 0.03	2.023HisGly: 2.023 ± 0.045	0.726HisHis: 0.726 ± 0.034	1.172HisIle: 1.172 ± 0.029	0.714HisLys: 0.714 ± 0.027	2.371HisLeu: 2.371 ± 0.049	0.504HisMet: 0.504 ± 0.018	0.55HisAsn: 0.55 ± 0.021	1.529HisPro: 1.529 ± 0.039	0.753HisGln: 0.753 ± 0.023	1.522HisArg: 1.522 ± 0.043	1.068HisSer: 1.068 ± 0.031	0.899HisThr: 0.899 ± 0.028	1.692HisVal: 1.692 ± 0.041	0.383HisTrp: 0.383 ± 0.017	0.741HisTyr: 0.741 ± 0.026	0.0HisXaa: 0.0 ± 0.0
Ile	7.444IleAla: 7.444 ± 0.085	0.537IleCys: 0.537 ± 0.023	3.855IleAsp: 3.855 ± 0.053	4.091IleGlu: 4.091 ± 0.063	2.099IlePhe: 2.099 ± 0.043	5.386IleGly: 5.386 ± 0.069	1.16IleHis: 1.16 ± 0.034	2.969IleIle: 2.969 ± 0.063	1.95IleLys: 1.95 ± 0.044	5.511IleLeu: 5.511 ± 0.086	1.064IleMet: 1.064 ± 0.031	1.651IleAsn: 1.651 ± 0.037	2.553IlePro: 2.553 ± 0.048	1.391IleGln: 1.391 ± 0.043	3.194IleArg: 3.194 ± 0.052	3.211IleSer: 3.211 ± 0.059	2.863IleThr: 2.863 ± 0.049	4.317IleVal: 4.317 ± 0.064	0.595IleTrp: 0.595 ± 0.022	1.267IleTyr: 1.267 ± 0.031	0.0IleXaa: 0.0 ± 0.0
Lys	4.631LysAla: 4.631 ± 0.066	0.175LysCys: 0.175 ± 0.011	1.918LysAsp: 1.918 ± 0.046	1.937LysGlu: 1.937 ± 0.044	0.953LysPhe: 0.953 ± 0.031	2.855LysGly: 2.855 ± 0.056	0.729LysHis: 0.729 ± 0.024	2.392LysIle: 2.392 ± 0.053	1.417LysLys: 1.417 ± 0.043	3.638LysLeu: 3.638 ± 0.061	0.744LysMet: 0.744 ± 0.03	1.121LysAsn: 1.121 ± 0.028	2.392LysPro: 2.392 ± 0.049	1.286LysGln: 1.286 ± 0.032	2.373LysArg: 2.373 ± 0.049	2.057LysSer: 2.057 ± 0.044	2.375LysThr: 2.375 ± 0.05	2.419LysVal: 2.419 ± 0.048	0.339LysTrp: 0.339 ± 0.017	0.659LysTyr: 0.659 ± 0.025	0.0LysXaa: 0.0 ± 0.0
Leu	13.776LeuAla: 13.776 ± 0.159	1.004LeuCys: 1.004 ± 0.029	6.138LeuAsp: 6.138 ± 0.078	5.446LeuGlu: 5.446 ± 0.077	4.217LeuPhe: 4.217 ± 0.069	8.243LeuGly: 8.243 ± 0.089	2.309LeuHis: 2.309 ± 0.051	5.903LeuIle: 5.903 ± 0.088	3.67LeuLys: 3.67 ± 0.057	10.434LeuLeu: 10.434 ± 0.141	2.2LeuMet: 2.2 ± 0.044	2.841LeuAsn: 2.841 ± 0.056	6.1LeuPro: 6.1 ± 0.072	3.109LeuGln: 3.109 ± 0.054	6.976LeuArg: 6.976 ± 0.103	6.96LeuSer: 6.96 ± 0.085	6.131LeuThr: 6.131 ± 0.074	7.349LeuVal: 7.349 ± 0.099	1.196LeuTrp: 1.196 ± 0.036	2.357LeuTyr: 2.357 ± 0.047	0.0LeuXaa: 0.0 ± 0.0
Met	2.663MetAla: 2.663 ± 0.048	0.117MetCys: 0.117 ± 0.01	1.07MetAsp: 1.07 ± 0.028	0.988MetGlu: 0.988 ± 0.032	0.622MetPhe: 0.622 ± 0.026	1.519MetGly: 1.519 ± 0.04	0.455MetHis: 0.455 ± 0.021	1.412MetIle: 1.412 ± 0.037	0.852MetLys: 0.852 ± 0.027	2.163MetLeu: 2.163 ± 0.047	0.514MetMet: 0.514 ± 0.021	0.766MetAsn: 0.766 ± 0.027	1.45MetPro: 1.45 ± 0.038	0.826MetGln: 0.826 ± 0.027	1.728MetArg: 1.728 ± 0.041	1.547MetSer: 1.547 ± 0.032	1.663MetThr: 1.663 ± 0.035	1.429MetVal: 1.429 ± 0.04	0.149MetTrp: 0.149 ± 0.011	0.25MetTyr: 0.25 ± 0.014	0.0MetXaa: 0.0 ± 0.0
Asn	3.259AsnAla: 3.259 ± 0.055	0.26AsnCys: 0.26 ± 0.015	1.501AsnAsp: 1.501 ± 0.043	1.486AsnGlu: 1.486 ± 0.041	1.115AsnPhe: 1.115 ± 0.032	2.565AsnGly: 2.565 ± 0.059	0.618AsnHis: 0.618 ± 0.025	1.621AsnIle: 1.621 ± 0.042	0.871AsnLys: 0.871 ± 0.026	2.921AsnLeu: 2.921 ± 0.057	0.517AsnMet: 0.517 ± 0.022	0.886AsnAsn: 0.886 ± 0.038	1.909AsnPro: 1.909 ± 0.044	0.919AsnGln: 0.919 ± 0.032	1.706AsnArg: 1.706 ± 0.036	1.441AsnSer: 1.441 ± 0.042	1.364AsnThr: 1.364 ± 0.046	2.033AsnVal: 2.033 ± 0.053	0.455AsnTrp: 0.455 ± 0.018	0.788AsnTyr: 0.788 ± 0.035	0.0AsnXaa: 0.0 ± 0.0
Pro	5.939ProAla: 5.939 ± 0.082	0.369ProCys: 0.369 ± 0.019	3.402ProAsp: 3.402 ± 0.059	3.58ProGlu: 3.58 ± 0.065	2.274ProPhe: 2.274 ± 0.052	4.309ProGly: 4.309 ± 0.065	1.322ProHis: 1.322 ± 0.033	2.801ProIle: 2.801 ± 0.047	1.929ProLys: 1.929 ± 0.045	5.424ProLeu: 5.424 ± 0.074	1.179ProMet: 1.179 ± 0.033	1.564ProAsn: 1.564 ± 0.042	2.942ProPro: 2.942 ± 0.069	1.959ProGln: 1.959 ± 0.045	2.994ProArg: 2.994 ± 0.048	3.318ProSer: 3.318 ± 0.053	2.62ProThr: 2.62 ± 0.051	3.983ProVal: 3.983 ± 0.063	0.671ProTrp: 0.671 ± 0.02	1.267ProTyr: 1.267 ± 0.032	0.0ProXaa: 0.0 ± 0.0
Gln	4.542GlnAla: 4.542 ± 0.065	0.209GlnCys: 0.209 ± 0.014	1.714GlnAsp: 1.714 ± 0.037	1.779GlnGlu: 1.779 ± 0.043	1.124GlnPhe: 1.124 ± 0.031	2.73GlnGly: 2.73 ± 0.052	0.703GlnHis: 0.703 ± 0.025	2.14GlnIle: 2.14 ± 0.047	1.422GlnLys: 1.422 ± 0.036	2.865GlnLeu: 2.865 ± 0.048	0.811GlnMet: 0.811 ± 0.026	1.141GlnAsn: 1.141 ± 0.034	1.876GlnPro: 1.876 ± 0.039	1.27GlnGln: 1.27 ± 0.033	2.364GlnArg: 2.364 ± 0.049	1.998GlnSer: 1.998 ± 0.044	2.017GlnThr: 2.017 ± 0.039	2.141GlnVal: 2.141 ± 0.042	0.463GlnTrp: 0.463 ± 0.021	0.639GlnTyr: 0.639 ± 0.027	0.0GlnXaa: 0.0 ± 0.0
Arg	6.87ArgAla: 6.87 ± 0.094	0.529ArgCys: 0.529 ± 0.024	3.598ArgAsp: 3.598 ± 0.055	3.987ArgGlu: 3.987 ± 0.064	2.967ArgPhe: 2.967 ± 0.052	4.369ArgGly: 4.369 ± 0.067	1.736ArgHis: 1.736 ± 0.041	4.034ArgIle: 4.034 ± 0.065	2.329ArgLys: 2.329 ± 0.048	7.972ArgLeu: 7.972 ± 0.102	1.515ArgMet: 1.515 ± 0.035	1.717ArgAsn: 1.717 ± 0.038	3.397ArgPro: 3.397 ± 0.056	2.682ArgGln: 2.682 ± 0.059	5.096ArgArg: 5.096 ± 0.081	3.535ArgSer: 3.535 ± 0.054	3.041ArgThr: 3.041 ± 0.053	4.085ArgVal: 4.085 ± 0.063	0.841ArgTrp: 0.841 ± 0.028	1.651ArgTyr: 1.651 ± 0.035	0.0ArgXaa: 0.0 ± 0.0
Ser	6.018SerAla: 6.018 ± 0.081	0.519SerCys: 0.519 ± 0.022	2.887SerAsp: 2.887 ± 0.056	2.943SerGlu: 2.943 ± 0.054	2.582SerPhe: 2.582 ± 0.05	5.092SerGly: 5.092 ± 0.075	1.329SerHis: 1.329 ± 0.03	3.133SerIle: 3.133 ± 0.055	1.853SerLys: 1.853 ± 0.041	6.765SerLeu: 6.765 ± 0.084	1.334SerMet: 1.334 ± 0.032	1.583SerAsn: 1.583 ± 0.046	3.161SerPro: 3.161 ± 0.054	1.901SerGln: 1.901 ± 0.042	3.483SerArg: 3.483 ± 0.058	3.493SerSer: 3.493 ± 0.071	2.892SerThr: 2.892 ± 0.049	3.938SerVal: 3.938 ± 0.068	0.796SerTrp: 0.796 ± 0.027	1.433SerTyr: 1.433 ± 0.048	0.0SerXaa: 0.0 ± 0.0
Thr	5.796ThrAla: 5.796 ± 0.075	0.485ThrCys: 0.485 ± 0.023	2.685ThrAsp: 2.685 ± 0.049	2.711ThrGlu: 2.711 ± 0.046	2.329ThrPhe: 2.329 ± 0.051	4.738ThrGly: 4.738 ± 0.078	1.276ThrHis: 1.276 ± 0.034	3.48ThrIle: 3.48 ± 0.055	1.861ThrLys: 1.861 ± 0.039	6.327ThrLeu: 6.327 ± 0.086	1.09ThrMet: 1.09 ± 0.034	1.57ThrAsn: 1.57 ± 0.051	3.483ThrPro: 3.483 ± 0.055	1.792ThrGln: 1.792 ± 0.04	3.258ThrArg: 3.258 ± 0.054	3.044ThrSer: 3.044 ± 0.061	3.002ThrThr: 3.002 ± 0.066	3.693ThrVal: 3.693 ± 0.068	0.628ThrTrp: 0.628 ± 0.025	1.381ThrTyr: 1.381 ± 0.038	0.0ThrXaa: 0.0 ± 0.0
Val	7.669ValAla: 7.669 ± 0.08	0.588ValCys: 0.588 ± 0.022	3.683ValAsp: 3.683 ± 0.053	4.19ValGlu: 4.19 ± 0.069	2.729ValPhe: 2.729 ± 0.054	4.661ValGly: 4.661 ± 0.065	1.44ValHis: 1.44 ± 0.034	3.881ValIle: 3.881 ± 0.059	2.355ValLys: 2.355 ± 0.049	7.181ValLeu: 7.181 ± 0.087	1.583ValMet: 1.583 ± 0.034	1.973ValAsn: 1.973 ± 0.049	3.782ValPro: 3.782 ± 0.049	2.033ValGln: 2.033 ± 0.044	4.104ValArg: 4.104 ± 0.066	4.265ValSer: 4.265 ± 0.067	4.256ValThr: 4.256 ± 0.061	4.816ValVal: 4.816 ± 0.073	0.71ValTrp: 0.71 ± 0.027	1.386ValTyr: 1.386 ± 0.032	0.0ValXaa: 0.0 ± 0.0
Trp	1.061TrpAla: 1.061 ± 0.03	0.15TrpCys: 0.15 ± 0.011	0.558TrpAsp: 0.558 ± 0.022	0.504TrpGlu: 0.504 ± 0.021	0.573TrpPhe: 0.573 ± 0.024	0.862TrpGly: 0.862 ± 0.032	0.356TrpHis: 0.356 ± 0.02	0.742TrpIle: 0.742 ± 0.028	0.44TrpLys: 0.44 ± 0.019	1.613TrpLeu: 1.613 ± 0.046	0.313TrpMet: 0.313 ± 0.017	0.456TrpAsn: 0.456 ± 0.021	0.71TrpPro: 0.71 ± 0.024	0.529TrpGln: 0.529 ± 0.021	1.143TrpArg: 1.143 ± 0.03	0.768TrpSer: 0.768 ± 0.029	0.753TrpThr: 0.753 ± 0.027	0.688TrpVal: 0.688 ± 0.025	0.203TrpTrp: 0.203 ± 0.014	0.285TrpTyr: 0.285 ± 0.017	0.0TrpXaa: 0.0 ± 0.0
Tyr	2.509TyrAla: 2.509 ± 0.047	0.251TyrCys: 0.251 ± 0.015	1.451TyrAsp: 1.451 ± 0.037	1.217TyrGlu: 1.217 ± 0.037	1.005TyrPhe: 1.005 ± 0.03	2.187TyrGly: 2.187 ± 0.047	0.582TyrHis: 0.582 ± 0.023	1.053TyrIle: 1.053 ± 0.031	0.722TyrLys: 0.722 ± 0.023	2.408TyrLeu: 2.408 ± 0.049	0.425TyrMet: 0.425 ± 0.018	0.721TyrAsn: 0.721 ± 0.032	1.22TyrPro: 1.22 ± 0.036	0.86TyrGln: 0.86 ± 0.03	1.742TyrArg: 1.742 ± 0.039	1.254TyrSer: 1.254 ± 0.035	1.149TyrThr: 1.149 ± 0.04	1.507TyrVal: 1.507 ± 0.035	0.363TyrTrp: 0.363 ± 0.016	0.694TyrTyr: 0.694 ± 0.031	0.0TyrXaa: 0.0 ± 0.0
Xaa	0.0XaaAla: 0.0 ± 0.0	0.0XaaCys: 0.0 ± 0.0	0.0XaaAsp: 0.0 ± 0.0	0.0XaaGlu: 0.0 ± 0.0	0.0XaaPhe: 0.0 ± 0.0	0.0XaaGly: 0.0 ± 0.0	0.0XaaHis: 0.0 ± 0.0	0.0XaaIle: 0.0 ± 0.0	0.0XaaLys: 0.0 ± 0.0	0.0XaaLeu: 0.0 ± 0.0	0.0XaaMet: 0.0 ± 0.0	0.0XaaAsn: 0.0 ± 0.0	0.0XaaPro: 0.0 ± 0.0	0.0XaaGln: 0.0 ± 0.0	0.0XaaArg: 0.0 ± 0.0	0.0XaaSer: 0.0 ± 0.0	0.0XaaThr: 0.0 ± 0.0	0.0XaaVal: 0.0 ± 0.0	0.0XaaTrp: 0.0 ± 0.0	0.0XaaTyr: 0.0 ± 0.0	0.0XaaXaa: 0.0 ± 0.0

Statistics based on 3774 proteins (1205051 amino acids)

Note: The error has been estimated with the bootstraping (x100) at the protein level

Above dipeptide statistics (among other stats for this proteome) you can download from this CSV file

Reference: Kozlowski LP. Proteome-pI 2.0: Proteome Isoelectric Point Database Update. Nucleic Acids Res. 2021, doi: 10.1093/nar/gkab944

Contact: Lukasz P. Kozlowski

---