Kibdelosporangium phytohabitans

Taxonomy: cellular organisms; Bacteria; Terrabacteria group; Actinobacteria; Actinomycetia; Pseudonocardiales; Pseudonocardiaceae; Kibdelosporangium

Average proteome isoelectric point is 6.4

Get precalculated fractions of proteins

Acidic
pI < 6.8
6.8-7.4
pI > 7.4
Basic
    
All



Virtual 2D-PAGE plot for 10118 proteins (isoelectric point calculated using IPC2_protein)

Get csv file with sequences according to given criteria:
        -     Method 

     -  kDa    
                                                                                      

* You can choose from 21 different methods for calculating isoelectric point

Summary statistics related to proteome-wise predictions


    
Protein with the lowest isoelectric point:
>tr|A0A0N9I4C3|A0A0N9I4C3_9PSEU Uncharacterized protein OS=Kibdelosporangium phytohabitans OX=860235 GN=AOZ06_23260 PE=4 SV=1
MM1 pKa = 7.61AVQLDD6 pKa = 4.06PQLLDD11 pKa = 3.54ILACPSEE18 pKa = 4.32DD19 pKa = 3.45HH20 pKa = 6.84AALRR24 pKa = 11.84PGTPDD29 pKa = 4.99DD30 pKa = 4.63PDD32 pKa = 6.17ADD34 pKa = 3.87VLTCTSCGRR43 pKa = 11.84QYY45 pKa = 11.05PVTDD49 pKa = 5.47GIPVLLLDD57 pKa = 3.76EE58 pKa = 4.45ATRR61 pKa = 11.84PEE63 pKa = 4.41SQTADD68 pKa = 3.35EE69 pKa = 4.49

Molecular weight: 7.36 kDa
Isoelectric point according different methods:





Protein with the highest isoelectric point:
>tr|A0A0N9IIB9|A0A0N9IIB9_9PSEU Mg-protoporphyrin IX chelatase OS=Kibdelosporangium phytohabitans OX=860235 GN=AOZ06_33225 PE=3 SV=1
MM1 pKa = 7.53SKK3 pKa = 10.53GKK5 pKa = 8.66RR6 pKa = 11.84TFQPNNRR13 pKa = 11.84RR14 pKa = 11.84RR15 pKa = 11.84ARR17 pKa = 11.84THH19 pKa = 5.69GFRR22 pKa = 11.84LRR24 pKa = 11.84MRR26 pKa = 11.84TRR28 pKa = 11.84AGRR31 pKa = 11.84AILSARR37 pKa = 11.84RR38 pKa = 11.84RR39 pKa = 11.84KK40 pKa = 9.62GRR42 pKa = 11.84AEE44 pKa = 3.84LSAA47 pKa = 4.93

Molecular weight: 5.54 kDa
Isoelectric point according different methods:





Peptides (in silico digests for buttom-up proteomics)

Below you can find in silico digests of the whole proteome with Trypsin, Chymotrypsin, Trypsin+LysC, LysN, ArgC proteases suitable for different mass spec machines.

Try
ESI
ChTry
ESI
ArgC
ESI
LysN
ESI
TryLysC
ESI

Try
MALDI
ChTry
MALDI
ArgC
MALDI
LysN
MALDI
TryLysC
MALDI

Try
LTQ
ChTry
LTQ
ArgC
LTQ
LysN
LTQ
TryLysC
LTQ

Try
MSlow
ChTry
MSlow
ArgC
MSlow
LysN
MSlow
TryLysC
MSlow

Try
MShigh
ChTry
MShigh
ArgC
MShigh
LysN
MShigh
TryLysC
MShigh

General Statistics

Number of major isoforms

Number of additional isoforms

Number of all proteins

Number of amino acids

Min. Seq. Length

Max. Seq. Length

Avg. Seq. Length

Avg. Mol. Weight

10118

0

10118

3331434

32

12487

329.3

35.41

Amino acid frequency

Ala

Cys

Asp

Glu

Phe

Gly

His

Ile

Lys

Leu

12.75 ± 0.036

0.792 ± 0.008

6.169 ± 0.019

5.203 ± 0.022

2.898 ± 0.014

8.975 ± 0.026

2.262 ± 0.013

3.686 ± 0.016

2.314 ± 0.021

10.202 ± 0.033

Met

Asn

Gln

Pro

Arg

Ser

Thr

Val

Trp

Tyr

1.864 ± 0.009

2.16 ± 0.017

5.777 ± 0.022

3.061 ± 0.013

7.694 ± 0.026

5.295 ± 0.017

6.261 ± 0.023

8.998 ± 0.025

1.575 ± 0.011

2.067 ± 0.015
Note: For amino acid frequency statistics the error has been estimated with the bootstraping (x100) at the protein level

Most of the basic statistics you can see at this page can be downloaded from this CSV file

For dipeptide frequency statistics click here
See this proteome in: uniprot_link
Proteome-pI is available under Creative Commons Attribution-NoDerivs license, for more details see here

Reference: Kozlowski LP. Proteome-pI 2.0: Proteome Isoelectric Point Database Update. Nucleic Acids Res. 2021, doi: 10.1093/nar/gkab944 Contact: Lukasz P. Kozlowski