Candidatus Endolissoclinum faulkneri L5

Taxonomy: cellular organisms; Bacteria; Proteobacteria; Alphaproteobacteria; Rhodospirillales; Rhodospirillaceae; Candidatus Endolissoclinum; Candidatus Endolissoclinum faulkneri

Average proteome isoelectric point is 7.12

Get precalculated fractions of proteins

Acidic
pI < 6.8
6.8-7.4
pI > 7.4
Basic
    
All



Virtual 2D-PAGE plot for 770 proteins (isoelectric point calculated using IPC2_protein)

Get csv file with sequences according to given criteria:
        -     Method 

     -  kDa    
                                                                                      

* You can choose from 21 different methods for calculating isoelectric point

Summary statistics related to proteome-wise predictions


    
Protein with the lowest isoelectric point:
>tr|V9TRK3|V9TRK3_9PROT PtzF OS=Candidatus Endolissoclinum faulkneri L5 OX=1401328 GN=ajuD PE=3 SV=1
MM1 pKa = 7.49YY2 pKa = 8.29FTDD5 pKa = 3.61IQIVLYY11 pKa = 10.57DD12 pKa = 3.82LGEE15 pKa = 4.69SIMEE19 pKa = 4.11YY20 pKa = 10.9FSMGGYY26 pKa = 9.27AAYY29 pKa = 9.84VWPSYY34 pKa = 10.28GIAMLILVGLLINSWSITRR53 pKa = 11.84RR54 pKa = 11.84YY55 pKa = 9.12EE56 pKa = 3.82ADD58 pKa = 4.9LICMCQNRR66 pKa = 11.84SDD68 pKa = 4.14IEE70 pKa = 4.14PVSIDD75 pKa = 3.13ITEE78 pKa = 4.01KK79 pKa = 10.91

Molecular weight: 9.1 kDa
Isoelectric point according different methods:





Protein with the highest isoelectric point:
>tr|V9TRG0|V9TRG0_9PROT Ferric uptake regulation protein OS=Candidatus Endolissoclinum faulkneri L5 OX=1401328 GN=np20 PE=3 SV=1
MM1 pKa = 7.35KK2 pKa = 9.37RR3 pKa = 11.84TYY5 pKa = 10.19QPSILVRR12 pKa = 11.84KK13 pKa = 8.81RR14 pKa = 11.84RR15 pKa = 11.84HH16 pKa = 4.45GFRR19 pKa = 11.84LRR21 pKa = 11.84MSTVGGRR28 pKa = 11.84NVIRR32 pKa = 11.84ARR34 pKa = 11.84RR35 pKa = 11.84AKK37 pKa = 9.76GRR39 pKa = 11.84KK40 pKa = 8.91RR41 pKa = 11.84LSAA44 pKa = 3.96

Molecular weight: 5.22 kDa
Isoelectric point according different methods:





Peptides (in silico digests for buttom-up proteomics)

Below you can find in silico digests of the whole proteome with Trypsin, Chymotrypsin, Trypsin+LysC, LysN, ArgC proteases suitable for different mass spec machines.

Try
ESI
ChTry
ESI
ArgC
ESI
LysN
ESI
TryLysC
ESI

Try
MALDI
ChTry
MALDI
ArgC
MALDI
LysN
MALDI
TryLysC
MALDI

Try
LTQ
ChTry
LTQ
ArgC
LTQ
LysN
LTQ
TryLysC
LTQ

Try
MSlow
ChTry
MSlow
ArgC
MSlow
LysN
MSlow
TryLysC
MSlow

Try
MShigh
ChTry
MShigh
ArgC
MShigh
LysN
MShigh
TryLysC
MShigh

General Statistics

Number of major isoforms

Number of additional isoforms

Number of all proteins

Number of amino acids

Min. Seq. Length

Max. Seq. Length

Avg. Seq. Length

Avg. Mol. Weight

770

0

770

280757

44

6504

364.6

40.31

Amino acid frequency

Ala

Cys

Asp

Glu

Phe

Gly

His

Ile

Lys

Leu

8.875 ± 0.123

1.251 ± 0.032

5.274 ± 0.06

5.357 ± 0.078

3.821 ± 0.056

6.968 ± 0.084

2.048 ± 0.035

8.318 ± 0.086

5.166 ± 0.097

10.12 ± 0.082

Met

Asn

Gln

Pro

Arg

Ser

Thr

Val

Trp

Tyr

2.536 ± 0.053

4.659 ± 0.055

4.037 ± 0.051

3.02 ± 0.05

5.858 ± 0.07

6.776 ± 0.075

5.206 ± 0.04

6.946 ± 0.07

1.09 ± 0.037

2.676 ± 0.054
Note: For amino acid frequency statistics the error has been estimated with the bootstraping (x100) at the protein level

Most of the basic statistics you can see at this page can be downloaded from this CSV file

For dipeptide frequency statistics click here
See this proteome in: uniprot_link
Proteome-pI is available under Creative Commons Attribution-NoDerivs license, for more details see here

Reference: Kozlowski LP. Proteome-pI 2.0: Proteome Isoelectric Point Database Update. Nucleic Acids Res. 2021, doi: 10.1093/nar/gkab944 Contact: Lukasz P. Kozlowski