Rhizophagus clarus

Taxonomy: cellular organisms; Eukaryota; Opisthokonta; Fungi; Fungi incertae sedis; Mucoromycota; Glomeromycotina; Glomeromycetes; Glomerales; Glomeraceae; Rhizophagus

Average proteome isoelectric point is 6.63

Get precalculated fractions of proteins

Acidic
pI < 6.8
6.8-7.4
pI > 7.4
Basic
    
All



Virtual 2D-PAGE plot for 27461 proteins (isoelectric point calculated using IPC2_protein)

Get csv file with sequences according to given criteria:
        -     Method 

     -  kDa    
                                                                                      

* You can choose from 21 different methods for calculating isoelectric point

Summary statistics related to proteome-wise predictions


    
Protein with the lowest isoelectric point:
>tr|A0A2Z6QKN8|A0A2Z6QKN8_9GLOM Uncharacterized protein OS=Rhizophagus clarus OX=94130 GN=RclHR1_17770002 PE=4 SV=1
MM1 pKa = 7.7ACVLLDD7 pKa = 4.21NIEE10 pKa = 5.14AYY12 pKa = 8.85PQNPDD17 pKa = 2.65TLLFVNVTLFEE28 pKa = 5.04LEE30 pKa = 4.44DD31 pKa = 4.4FNGSSQTFTIEE42 pKa = 3.69PEE44 pKa = 3.68ICFEE48 pKa = 4.01VPEE51 pKa = 5.26DD52 pKa = 3.34IGHH55 pKa = 6.96DD56 pKa = 3.44VGSAIIGDD64 pKa = 3.99DD65 pKa = 3.67DD66 pKa = 3.77CVKK69 pKa = 10.62FFTGTDD75 pKa = 3.34CTGNSVCACGEE86 pKa = 4.09KK87 pKa = 10.45NFPDD91 pKa = 4.41GDD93 pKa = 3.98PFKK96 pKa = 11.42DD97 pKa = 3.46NIGSIRR103 pKa = 11.84LNEE106 pKa = 3.83VDD108 pKa = 4.32STIKK112 pKa = 10.65KK113 pKa = 10.27CDD115 pKa = 3.28VV116 pKa = 3.11

Molecular weight: 12.65 kDa
Isoelectric point according different methods:





Protein with the highest isoelectric point:
>tr|A0A2Z6QRH7|A0A2Z6QRH7_9GLOM Uncharacterized protein OS=Rhizophagus clarus OX=94130 GN=RclHR1_20490002 PE=4 SV=1
MM1 pKa = 7.89DD2 pKa = 4.84NEE4 pKa = 4.3EE5 pKa = 3.87NCINRR10 pKa = 11.84TIRR13 pKa = 11.84KK14 pKa = 9.05RR15 pKa = 11.84RR16 pKa = 11.84FKK18 pKa = 10.84RR19 pKa = 11.84QLKK22 pKa = 9.02NKK24 pKa = 9.03NINVVRR30 pKa = 11.84RR31 pKa = 11.84SSFNNPPVINQQRR44 pKa = 11.84RR45 pKa = 11.84NPVQRR50 pKa = 11.84RR51 pKa = 11.84LPRR54 pKa = 11.84RR55 pKa = 11.84RR56 pKa = 11.84IPPVINQPRR65 pKa = 11.84RR66 pKa = 11.84NPVQRR71 pKa = 11.84RR72 pKa = 11.84LPRR75 pKa = 11.84RR76 pKa = 11.84RR77 pKa = 11.84RR78 pKa = 3.35

Molecular weight: 9.77 kDa
Isoelectric point according different methods:





Peptides (in silico digests for buttom-up proteomics)

Below you can find in silico digests of the whole proteome with Trypsin, Chymotrypsin, Trypsin+LysC, LysN, ArgC proteases suitable for different mass spec machines.

Try
ESI
ChTry
ESI
ArgC
ESI
LysN
ESI
TryLysC
ESI

Try
MALDI
ChTry
MALDI
ArgC
MALDI
LysN
MALDI
TryLysC
MALDI

Try
LTQ
ChTry
LTQ
ArgC
LTQ
LysN
LTQ
TryLysC
LTQ

Try
MSlow
ChTry
MSlow
ArgC
MSlow
LysN
MSlow
TryLysC
MSlow

Try
MShigh
ChTry
MShigh
ArgC
MShigh
LysN
MShigh
TryLysC
MShigh

General Statistics

Number of major isoforms

Number of additional isoforms

Number of all proteins

Number of amino acids

Min. Seq. Length

Max. Seq. Length

Avg. Seq. Length

Avg. Mol. Weight

27454

7

27461

10447393

12

7141

380.4

43.75

Amino acid frequency

Ala

Cys

Asp

Glu

Phe

Gly

His

Ile

Lys

Leu

4.449 ± 0.014

1.634 ± 0.007

5.854 ± 0.011

6.818 ± 0.017

4.592 ± 0.011

4.343 ± 0.012

2.234 ± 0.006

8.165 ± 0.015

8.002 ± 0.018

9.118 ± 0.016

Met

Asn

Gln

Pro

Arg

Ser

Thr

Val

Trp

Tyr

1.901 ± 0.005

7.323 ± 0.018

4.034 ± 0.013

3.836 ± 0.012

4.285 ± 0.011

7.923 ± 0.018

5.294 ± 0.014

4.782 ± 0.011

1.238 ± 0.006

4.158 ± 0.013
Note: For amino acid frequency statistics the error has been estimated with the bootstraping (x100) at the protein level

Most of the basic statistics you can see at this page can be downloaded from this CSV file

For dipeptide frequency statistics click here
See this proteome in: uniprot_link
Proteome-pI is available under Creative Commons Attribution-NoDerivs license, for more details see here

Reference: Kozlowski LP. Proteome-pI 2.0: Proteome Isoelectric Point Database Update. Nucleic Acids Res. 2021, doi: 10.1093/nar/gkab944 Contact: Lukasz P. Kozlowski