Glomus cerebriforme

Taxonomy: cellular organisms; Eukaryota; Opisthokonta; Fungi; Fungi incertae sedis; Mucoromycota; Glomeromycotina; Glomeromycetes; Glomerales; Glomeraceae; Glomus

Average proteome isoelectric point is 6.58

Get precalculated fractions of proteins

Acidic
pI < 6.8
6.8-7.4
pI > 7.4
Basic
    
All



Virtual 2D-PAGE plot for 20972 proteins (isoelectric point calculated using IPC2_protein)

Get csv file with sequences according to given criteria:
        -     Method 

     -  kDa    
                                                                                      

* You can choose from 21 different methods for calculating isoelectric point

Summary statistics related to proteome-wise predictions


    
Protein with the lowest isoelectric point:
>tr|A0A397TL31|A0A397TL31_9GLOM Trafficking protein particle complex subunit OS=Glomus cerebriforme OX=658196 GN=C1645_718793 PE=3 SV=1
MM1 pKa = 7.92PILVFEE7 pKa = 4.56WNEE10 pKa = 3.75GGFNDD15 pKa = 4.94VPDD18 pKa = 4.3APGLRR23 pKa = 11.84NGVAGQTKK31 pKa = 9.83AAIVANLMANGATNYY46 pKa = 10.42NDD48 pKa = 3.69IIFAFSSGHH57 pKa = 7.5AIGEE61 pKa = 4.1WCRR64 pKa = 11.84QISMNIQWALNQPGVPNICNSITRR88 pKa = 11.84INPIIRR94 pKa = 11.84YY95 pKa = 9.38EE96 pKa = 4.95DD97 pKa = 4.73DD98 pKa = 5.86DD99 pKa = 7.25DD100 pKa = 7.26DD101 pKa = 6.98DD102 pKa = 6.69DD103 pKa = 4.1EE104 pKa = 4.8TGIPSPEE111 pKa = 3.66FDD113 pKa = 3.46IEE115 pKa = 4.1NYY117 pKa = 9.69PAFGYY122 pKa = 10.51CC123 pKa = 4.49

Molecular weight: 13.53 kDa
Isoelectric point according different methods:





Protein with the highest isoelectric point:
>tr|A0A397S1M7|A0A397S1M7_9GLOM Uncharacterized protein (Fragment) OS=Glomus cerebriforme OX=658196 GN=C1645_794415 PE=4 SV=1
MM1 pKa = 7.76IILLTSTHH9 pKa = 5.68LTSIRR14 pKa = 11.84VQITVKK20 pKa = 8.81NHH22 pKa = 4.47RR23 pKa = 11.84RR24 pKa = 11.84RR25 pKa = 11.84KK26 pKa = 9.09RR27 pKa = 11.84WITSWTRR34 pKa = 11.84RR35 pKa = 11.84IRR37 pKa = 11.84KK38 pKa = 9.33SLVIVLGNAIKK49 pKa = 10.58SRR51 pKa = 11.84NLKK54 pKa = 9.98KK55 pKa = 10.28RR56 pKa = 11.84SKK58 pKa = 10.78HH59 pKa = 5.62LLTKK63 pKa = 10.27IKK65 pKa = 10.8NLISGG70 pKa = 4.03

Molecular weight: 8.28 kDa
Isoelectric point according different methods:





Peptides (in silico digests for buttom-up proteomics)

Below you can find in silico digests of the whole proteome with Trypsin, Chymotrypsin, Trypsin+LysC, LysN, ArgC proteases suitable for different mass spec machines.

Try
ESI
ChTry
ESI
ArgC
ESI
LysN
ESI
TryLysC
ESI

Try
MALDI
ChTry
MALDI
ArgC
MALDI
LysN
MALDI
TryLysC
MALDI

Try
LTQ
ChTry
LTQ
ArgC
LTQ
LysN
LTQ
TryLysC
LTQ

Try
MSlow
ChTry
MSlow
ArgC
MSlow
LysN
MSlow
TryLysC
MSlow

Try
MShigh
ChTry
MShigh
ArgC
MShigh
LysN
MShigh
TryLysC
MShigh

General Statistics

Number of major isoforms

Number of additional isoforms

Number of all proteins

Number of amino acids

Min. Seq. Length

Max. Seq. Length

Avg. Seq. Length

Avg. Mol. Weight

20968

4

20972

6808095

49

5062

324.6

37.24

Amino acid frequency

Ala

Cys

Asp

Glu

Phe

Gly

His

Ile

Lys

Leu

4.507 ± 0.017

1.531 ± 0.009

5.722 ± 0.013

6.951 ± 0.019

4.69 ± 0.014

4.542 ± 0.018

2.152 ± 0.008

8.25 ± 0.018

7.896 ± 0.021

9.187 ± 0.019

Met

Asn

Gln

Pro

Arg

Ser

Thr

Val

Trp

Tyr

2.007 ± 0.006

7.089 ± 0.02

4.06 ± 0.015

3.824 ± 0.013

4.264 ± 0.013

7.884 ± 0.018

5.296 ± 0.012

4.971 ± 0.016

1.158 ± 0.006

3.981 ± 0.012
Note: For amino acid frequency statistics the error has been estimated with the bootstraping (x100) at the protein level

Most of the basic statistics you can see at this page can be downloaded from this CSV file

For dipeptide frequency statistics click here
See this proteome in: uniprot_link
Proteome-pI is available under Creative Commons Attribution-NoDerivs license, for more details see here

Reference: Kozlowski LP. Proteome-pI 2.0: Proteome Isoelectric Point Database Update. Nucleic Acids Res. 2021, doi: 10.1093/nar/gkab944 Contact: Lukasz P. Kozlowski