Listeria phage LP-125

Taxonomy: Viruses; Duplodnaviria; Heunggongvirae; Uroviricota; Caudoviricetes; Caudovirales; Herelleviridae; Jasinkavirinae; Pecentumvirus; Listeria virus LP083-2

Average proteome isoelectric point is 6.27

Get precalculated fractions of proteins

Acidic
pI < 6.8
6.8-7.4
pI > 7.4
Basic
    
All



Virtual 2D-PAGE plot for 189 proteins (isoelectric point calculated using IPC2_protein)

Get csv file with sequences according to given criteria:
        -     Method 

     -  kDa    
                                                                                      

* You can choose from 21 different methods for calculating isoelectric point

Summary statistics related to proteome-wise predictions


    
Protein with the lowest isoelectric point:
>tr|S4U6T7|S4U6T7_9CAUD Uncharacterized protein OS=Listeria phage LP-125 OX=1173766 GN=LP125_047 PE=4 SV=1
MM1 pKa = 8.12DD2 pKa = 5.13LNKK5 pKa = 10.05FLTEE9 pKa = 3.76VDD11 pKa = 4.15KK12 pKa = 11.09VTSAYY17 pKa = 10.54GEE19 pKa = 4.07DD20 pKa = 3.4ANYY23 pKa = 9.69EE24 pKa = 3.62ISFIRR29 pKa = 11.84EE30 pKa = 3.53KK31 pKa = 11.13YY32 pKa = 10.37ADD34 pKa = 4.07LDD36 pKa = 3.79EE37 pKa = 5.05GAKK40 pKa = 9.62QDD42 pKa = 4.56CEE44 pKa = 3.94EE45 pKa = 4.01TDD47 pKa = 3.63FFEE50 pKa = 4.19EE51 pKa = 4.18VEE53 pKa = 4.92YY54 pKa = 10.45ISQMQTGEE62 pKa = 4.24DD63 pKa = 3.76CFEE66 pKa = 4.19GYY68 pKa = 9.86IFRR71 pKa = 11.84KK72 pKa = 9.49IKK74 pKa = 9.12NTDD77 pKa = 2.29WCLCVTYY84 pKa = 10.5AII86 pKa = 4.8

Molecular weight: 10.11 kDa
Isoelectric point according different methods:





Protein with the highest isoelectric point:
>tr|S4UCD2|S4UCD2_9CAUD Uncharacterized protein OS=Listeria phage LP-125 OX=1173766 GN=LP125_171 PE=4 SV=1
MM1 pKa = 7.77ANNTRR6 pKa = 11.84GNLPRR11 pKa = 11.84GYY13 pKa = 8.15TALGDD18 pKa = 3.61GSEE21 pKa = 4.12SHH23 pKa = 5.94KK24 pKa = 9.73TVEE27 pKa = 3.95RR28 pKa = 11.84ALRR31 pKa = 11.84GYY33 pKa = 8.57YY34 pKa = 9.3TVDD37 pKa = 3.97FSNIYY42 pKa = 9.91EE43 pKa = 4.34HH44 pKa = 5.52MTEE47 pKa = 3.98RR48 pKa = 11.84DD49 pKa = 3.36LEE51 pKa = 4.31VRR53 pKa = 11.84QAYY56 pKa = 10.09AKK58 pKa = 10.56DD59 pKa = 4.33LISQRR64 pKa = 11.84TGIPLDD70 pKa = 3.56MILFRR75 pKa = 11.84KK76 pKa = 8.42KK77 pKa = 8.62TEE79 pKa = 4.01KK80 pKa = 9.25QTLTAIDD87 pKa = 3.42EE88 pKa = 4.4VFYY91 pKa = 11.14VKK93 pKa = 10.5QGVKK97 pKa = 9.87TIGKK101 pKa = 9.59VSIRR105 pKa = 11.84SQRR108 pKa = 11.84LLSSNMLIIIYY119 pKa = 8.63MSKK122 pKa = 9.08SHH124 pKa = 6.15MPRR127 pKa = 11.84VVRR130 pKa = 11.84NTGMKK135 pKa = 9.78TYY137 pKa = 9.47TKK139 pKa = 10.09RR140 pKa = 11.84SKK142 pKa = 11.08SDD144 pKa = 2.68IRR146 pKa = 11.84VAKK149 pKa = 9.98RR150 pKa = 11.84QRR152 pKa = 11.84KK153 pKa = 3.95TTKK156 pKa = 8.87RR157 pKa = 11.84QSYY160 pKa = 9.68

Molecular weight: 18.56 kDa
Isoelectric point according different methods:





Peptides (in silico digests for buttom-up proteomics)

Below you can find in silico digests of the whole proteome with Trypsin, Chymotrypsin, Trypsin+LysC, LysN, ArgC proteases suitable for different mass spec machines.

Try
ESI
ChTry
ESI
ArgC
ESI
LysN
ESI
TryLysC
ESI

Try
MALDI
ChTry
MALDI
ArgC
MALDI
LysN
MALDI
TryLysC
MALDI

Try
LTQ
ChTry
LTQ
ArgC
LTQ
LysN
LTQ
TryLysC
LTQ

Try
MSlow
ChTry
MSlow
ArgC
MSlow
LysN
MSlow
TryLysC
MSlow

Try
MShigh
ChTry
MShigh
ArgC
MShigh
LysN
MShigh
TryLysC
MShigh

General Statistics

Number of major isoforms

Number of additional isoforms

Number of all proteins

Number of amino acids

Min. Seq. Length

Max. Seq. Length

Avg. Seq. Length

Avg. Mol. Weight

189

0

189

39824

38

1309

210.7

23.94

Amino acid frequency

Ala

Cys

Asp

Glu

Phe

Gly

His

Ile

Lys

Leu

5.758 ± 0.227

0.648 ± 0.059

5.951 ± 0.112

8.231 ± 0.288

3.927 ± 0.116

5.868 ± 0.287

1.487 ± 0.088

6.639 ± 0.222

8.651 ± 0.258

8.578 ± 0.219

Met

Asn

Gln

Pro

Arg

Ser

Thr

Val

Trp

Tyr

2.443 ± 0.09

5.672 ± 0.117

2.85 ± 0.146

3.362 ± 0.218

4.103 ± 0.101

6.807 ± 0.178

6.31 ± 0.169

7.237 ± 0.165

0.977 ± 0.065

4.5 ± 0.15
Note: For amino acid frequency statistics the error has been estimated with the bootstraping (x100) at the protein level

Most of the basic statistics you can see at this page can be downloaded from this CSV file

For dipeptide frequency statistics click here
See this proteome in: uniprot_link
Proteome-pI is available under Creative Commons Attribution-NoDerivs license, for more details see here

Reference: Kozlowski LP. Proteome-pI 2.0: Proteome Isoelectric Point Database Update. Nucleic Acids Res. 2021, doi: 10.1093/nar/gkab944 Contact: Lukasz P. Kozlowski