Marmoricola mangrovicus

Taxonomy: cellular organisms; Bacteria; Terrabacteria group; Actinobacteria; Actinomycetia; Propionibacteriales; Nocardioidaceae; Marmoricola

Average proteome isoelectric point is 6.16

Get precalculated fractions of proteins

Acidic
pI < 6.8
6.8-7.4
pI > 7.4
Basic
    
All



Virtual 2D-PAGE plot for 3882 proteins (isoelectric point calculated using IPC2_protein)

Get csv file with sequences according to given criteria:
        -     Method 

     -  kDa    
                                                                                      

* You can choose from 21 different methods for calculating isoelectric point

Summary statistics related to proteome-wise predictions


    
Protein with the lowest isoelectric point:
>tr|A0A3L8P1F4|A0A3L8P1F4_9ACTN Imidazoleglycerol-phosphate dehydratase OS=Marmoricola mangrovicus OX=2478913 GN=hisB PE=3 SV=1
MM1 pKa = 7.96IPEE4 pKa = 4.34DD5 pKa = 3.41LKK7 pKa = 10.87YY8 pKa = 8.99TAEE11 pKa = 4.42HH12 pKa = 5.69EE13 pKa = 4.59WVRR16 pKa = 11.84QPGQQEE22 pKa = 3.96GSVRR26 pKa = 11.84VGITDD31 pKa = 3.51YY32 pKa = 11.58AQDD35 pKa = 3.49QLGDD39 pKa = 3.4IVYY42 pKa = 9.88VQLPEE47 pKa = 4.08VGTTVAAGDD56 pKa = 3.91SVGEE60 pKa = 4.1LEE62 pKa = 4.42STKK65 pKa = 10.59SVSEE69 pKa = 3.98IYY71 pKa = 10.7APVGGEE77 pKa = 3.7VVARR81 pKa = 11.84NEE83 pKa = 4.28SLDD86 pKa = 3.62ATPEE90 pKa = 4.13LVNSEE95 pKa = 4.49PYY97 pKa = 10.4AEE99 pKa = 4.2GWLFEE104 pKa = 4.31VVPSDD109 pKa = 4.53SSEE112 pKa = 4.05LDD114 pKa = 3.26ALLDD118 pKa = 4.09DD119 pKa = 4.3ATYY122 pKa = 11.06SAGLDD127 pKa = 3.65GG128 pKa = 5.57

Molecular weight: 13.71 kDa
Isoelectric point according different methods:





Protein with the highest isoelectric point:
>tr|A0A3L8P5Z7|A0A3L8P5Z7_9ACTN Aldehyde dehydrogenase family protein OS=Marmoricola mangrovicus OX=2478913 GN=D9V37_04715 PE=3 SV=1
MM1 pKa = 7.28GSVVKK6 pKa = 10.49KK7 pKa = 9.45RR8 pKa = 11.84RR9 pKa = 11.84KK10 pKa = 9.48RR11 pKa = 11.84MAKK14 pKa = 9.41KK15 pKa = 9.99KK16 pKa = 9.77HH17 pKa = 5.81RR18 pKa = 11.84KK19 pKa = 8.51LLKK22 pKa = 8.15KK23 pKa = 9.12TRR25 pKa = 11.84VQRR28 pKa = 11.84RR29 pKa = 11.84RR30 pKa = 11.84LGKK33 pKa = 10.04

Molecular weight: 4.09 kDa
Isoelectric point according different methods:





Peptides (in silico digests for buttom-up proteomics)

Below you can find in silico digests of the whole proteome with Trypsin, Chymotrypsin, Trypsin+LysC, LysN, ArgC proteases suitable for different mass spec machines.

Try
ESI
ChTry
ESI
ArgC
ESI
LysN
ESI
TryLysC
ESI

Try
MALDI
ChTry
MALDI
ArgC
MALDI
LysN
MALDI
TryLysC
MALDI

Try
LTQ
ChTry
LTQ
ArgC
LTQ
LysN
LTQ
TryLysC
LTQ

Try
MSlow
ChTry
MSlow
ArgC
MSlow
LysN
MSlow
TryLysC
MSlow

Try
MShigh
ChTry
MShigh
ArgC
MShigh
LysN
MShigh
TryLysC
MShigh

General Statistics

Number of major isoforms

Number of additional isoforms

Number of all proteins

Number of amino acids

Min. Seq. Length

Max. Seq. Length

Avg. Seq. Length

Avg. Mol. Weight

3882

0

3882

1253811

29

1617

323.0

34.59

Amino acid frequency

Ala

Cys

Asp

Glu

Phe

Gly

His

Ile

Lys

Leu

13.135 ± 0.049

0.735 ± 0.011

6.271 ± 0.034

5.601 ± 0.039

2.758 ± 0.023

9.234 ± 0.029

2.313 ± 0.021

3.117 ± 0.029

1.86 ± 0.028

10.532 ± 0.049

Met

Asn

Gln

Pro

Arg

Ser

Thr

Val

Trp

Tyr

1.782 ± 0.016

1.693 ± 0.02

5.467 ± 0.025

2.942 ± 0.019

7.803 ± 0.044

5.397 ± 0.031

5.986 ± 0.032

9.83 ± 0.044

1.532 ± 0.016

2.009 ± 0.016
Note: For amino acid frequency statistics the error has been estimated with the bootstraping (x100) at the protein level

Most of the basic statistics you can see at this page can be downloaded from this CSV file

For dipeptide frequency statistics click here
See this proteome in: uniprot_link
Proteome-pI is available under Creative Commons Attribution-NoDerivs license, for more details see here

Reference: Kozlowski LP. Proteome-pI 2.0: Proteome Isoelectric Point Database Update. Nucleic Acids Res. 2021, doi: 10.1093/nar/gkab944 Contact: Lukasz P. Kozlowski