Erysipelothrix sp. HDW6A

Taxonomy: cellular organisms; Bacteria; Terrabacteria group; Firmicutes; Erysipelotrichia; Erysipelotrichales; Erysipelotrichaceae; Erysipelothrix; unclassified Erysipelothrix

Average proteome isoelectric point is 5.96

Get precalculated fractions of proteins

Acidic
pI < 6.8
6.8-7.4
pI > 7.4
Basic
    
All



Virtual 2D-PAGE plot for 1961 proteins (isoelectric point calculated using IPC2_protein)

Get csv file with sequences according to given criteria:
        -     Method 

     -  kDa    
                                                                                      

* You can choose from 21 different methods for calculating isoelectric point

Summary statistics related to proteome-wise predictions


    
Protein with the lowest isoelectric point:
>tr|A0A6G7WWU2|A0A6G7WWU2_9FIRM Uncharacterized protein OS=Erysipelothrix sp. HDW6A OX=2714928 GN=G7059_01810 PE=4 SV=1
MM1 pKa = 7.65AGKK4 pKa = 9.87QKK6 pKa = 10.45FCEE9 pKa = 4.42CEE11 pKa = 4.27SPSSVYY17 pKa = 10.58TEE19 pKa = 4.28VVANDD24 pKa = 3.8TAHH27 pKa = 6.89VDD29 pKa = 3.61YY30 pKa = 11.23CSDD33 pKa = 3.73CNLPIEE39 pKa = 4.4DD40 pKa = 3.6TFEE43 pKa = 3.84YY44 pKa = 9.84FQYY47 pKa = 10.98GSEE50 pKa = 4.25DD51 pKa = 4.06YY52 pKa = 11.24YY53 pKa = 11.89GG54 pKa = 3.56

Molecular weight: 6.15 kDa
Isoelectric point according different methods:





Protein with the highest isoelectric point:
>tr|A0A6G7WWU7|A0A6G7WWU7_9FIRM tRNA-specific adenosine deaminase OS=Erysipelothrix sp. HDW6A OX=2714928 GN=tadA PE=3 SV=1
MM1 pKa = 7.35KK2 pKa = 9.43RR3 pKa = 11.84TYY5 pKa = 10.14QPSKK9 pKa = 9.95RR10 pKa = 11.84KK11 pKa = 7.81HH12 pKa = 5.11QKK14 pKa = 8.48VHH16 pKa = 5.53GFRR19 pKa = 11.84ARR21 pKa = 11.84MKK23 pKa = 8.28TVGGRR28 pKa = 11.84RR29 pKa = 11.84VLARR33 pKa = 11.84RR34 pKa = 11.84RR35 pKa = 11.84SKK37 pKa = 10.59GRR39 pKa = 11.84KK40 pKa = 8.44VLSAA44 pKa = 4.05

Molecular weight: 5.21 kDa
Isoelectric point according different methods:





Peptides (in silico digests for buttom-up proteomics)

Below you can find in silico digests of the whole proteome with Trypsin, Chymotrypsin, Trypsin+LysC, LysN, ArgC proteases suitable for different mass spec machines.

Try
ESI
ChTry
ESI
ArgC
ESI
LysN
ESI
TryLysC
ESI

Try
MALDI
ChTry
MALDI
ArgC
MALDI
LysN
MALDI
TryLysC
MALDI

Try
LTQ
ChTry
LTQ
ArgC
LTQ
LysN
LTQ
TryLysC
LTQ

Try
MSlow
ChTry
MSlow
ArgC
MSlow
LysN
MSlow
TryLysC
MSlow

Try
MShigh
ChTry
MShigh
ArgC
MShigh
LysN
MShigh
TryLysC
MShigh

General Statistics

Number of major isoforms

Number of additional isoforms

Number of all proteins

Number of amino acids

Min. Seq. Length

Max. Seq. Length

Avg. Seq. Length

Avg. Mol. Weight

1961

0

1961

589313

25

2195

300.5

33.92

Amino acid frequency

Ala

Cys

Asp

Glu

Phe

Gly

His

Ile

Lys

Leu

6.055 ± 0.059

0.665 ± 0.015

6.053 ± 0.045

7.153 ± 0.063

4.519 ± 0.041

6.154 ± 0.051

1.938 ± 0.028

8.53 ± 0.056

6.711 ± 0.05

9.345 ± 0.064

Met

Asn

Gln

Pro

Arg

Ser

Thr

Val

Trp

Tyr

2.762 ± 0.03

5.293 ± 0.049

3.052 ± 0.034

3.232 ± 0.032

3.902 ± 0.044

6.672 ± 0.046

5.604 ± 0.054

7.369 ± 0.048

0.755 ± 0.018

4.235 ± 0.038
Note: For amino acid frequency statistics the error has been estimated with the bootstraping (x100) at the protein level

Most of the basic statistics you can see at this page can be downloaded from this CSV file

For dipeptide frequency statistics click here
See this proteome in: uniprot_link
Proteome-pI is available under Creative Commons Attribution-NoDerivs license, for more details see here

Reference: Kozlowski LP. Proteome-pI 2.0: Proteome Isoelectric Point Database Update. Nucleic Acids Res. 2021, doi: 10.1093/nar/gkab944 Contact: Lukasz P. Kozlowski