Trichinella nativa

Taxonomy: cellular organisms; Eukaryota; Opisthokonta; Metazoa; Eumetazoa; Bilateria; Protostomia; Ecdysozoa; Nematoda; Enoplea; Dorylaimia; Trichinellida; Trichinellidae; Trichinella

Average proteome isoelectric point is 7.12

Get precalculated fractions of proteins

Acidic
pI < 6.8
6.8-7.4
pI > 7.4
Basic
    
All



Virtual 2D-PAGE plot for 16771 proteins (isoelectric point calculated using IPC2_protein)

Get csv file with sequences according to given criteria:
        -     Method 

     -  kDa    
                                                                                      

* You can choose from 21 different methods for calculating isoelectric point

Summary statistics related to proteome-wise predictions


    
Protein with the lowest isoelectric point:
>tr|A0A0V1L8G2|A0A0V1L8G2_9BILA Uncharacterized protein OS=Trichinella nativa OX=6335 GN=T02_8157 PE=4 SV=1
MM1 pKa = 7.78EE2 pKa = 5.25DD3 pKa = 2.75WKK5 pKa = 11.1IFDD8 pKa = 4.19FDD10 pKa = 3.79VDD12 pKa = 3.85LMLWLVMLAMLLHH25 pKa = 5.43MAKK28 pKa = 10.42YY29 pKa = 10.45LLDD32 pKa = 3.73YY33 pKa = 11.44LEE35 pKa = 4.54TFQEE39 pKa = 4.26KK40 pKa = 10.83EE41 pKa = 3.96EE42 pKa = 4.85LIQLLNEE49 pKa = 3.77THH51 pKa = 6.37YY52 pKa = 11.81SMEE55 pKa = 3.9QVEE58 pKa = 4.68QIVEE62 pKa = 4.22HH63 pKa = 5.41QQSVDD68 pKa = 3.12NKK70 pKa = 10.54DD71 pKa = 4.01YY72 pKa = 11.01IGEE75 pKa = 4.15PYY77 pKa = 10.21IFYY80 pKa = 10.94DD81 pKa = 3.27PDD83 pKa = 4.24KK84 pKa = 11.38DD85 pKa = 4.21VFTLQIDD92 pKa = 4.34FNNLSEE98 pKa = 4.58DD99 pKa = 3.47NCIKK103 pKa = 10.69VCLAVWNALVNIDD116 pKa = 5.08SDD118 pKa = 4.86SDD120 pKa = 4.78DD121 pKa = 5.48DD122 pKa = 6.7DD123 pKa = 7.24SDD125 pKa = 6.18DD126 pKa = 5.14DD127 pKa = 5.25DD128 pKa = 6.09SEE130 pKa = 4.73EE131 pKa = 5.05SDD133 pKa = 3.58EE134 pKa = 4.16QQ135 pKa = 3.8

Molecular weight: 16.03 kDa
Isoelectric point according different methods:





Protein with the highest isoelectric point:
>tr|A0A0V1KIL0|A0A0V1KIL0_9BILA Uncharacterized protein (Fragment) OS=Trichinella nativa OX=6335 GN=T02_7353 PE=4 SV=1
LL1 pKa = 5.75MQRR4 pKa = 11.84KK5 pKa = 9.51RR6 pKa = 11.84GWSRR10 pKa = 11.84LKK12 pKa = 10.31RR13 pKa = 11.84ARR15 pKa = 11.84KK16 pKa = 8.95RR17 pKa = 11.84RR18 pKa = 11.84KK19 pKa = 8.45KK20 pKa = 10.0KK21 pKa = 7.73MRR23 pKa = 11.84RR24 pKa = 11.84RR25 pKa = 11.84MRR27 pKa = 11.84EE28 pKa = 3.39TRR30 pKa = 11.84RR31 pKa = 11.84KK32 pKa = 10.2RR33 pKa = 11.84KK34 pKa = 7.82TKK36 pKa = 9.79LKK38 pKa = 11.15KK39 pKa = 9.95MMNN42 pKa = 3.65

Molecular weight: 5.58 kDa
Isoelectric point according different methods:





Peptides (in silico digests for buttom-up proteomics)

Below you can find in silico digests of the whole proteome with Trypsin, Chymotrypsin, Trypsin+LysC, LysN, ArgC proteases suitable for different mass spec machines.

Try
ESI
ChTry
ESI
ArgC
ESI
LysN
ESI
TryLysC
ESI

Try
MALDI
ChTry
MALDI
ArgC
MALDI
LysN
MALDI
TryLysC
MALDI

Try
LTQ
ChTry
LTQ
ArgC
LTQ
LysN
LTQ
TryLysC
LTQ

Try
MSlow
ChTry
MSlow
ArgC
MSlow
LysN
MSlow
TryLysC
MSlow

Try
MShigh
ChTry
MShigh
ArgC
MShigh
LysN
MShigh
TryLysC
MShigh

General Statistics

Number of major isoforms

Number of additional isoforms

Number of all proteins

Number of amino acids

Min. Seq. Length

Max. Seq. Length

Avg. Seq. Length

Avg. Mol. Weight

13202

3569

16771

8159799

30

14853

486.5

55.05

Amino acid frequency

Ala

Cys

Asp

Glu

Phe

Gly

His

Ile

Lys

Leu

6.44 ± 0.017

2.644 ± 0.018

5.266 ± 0.015

6.325 ± 0.026

4.582 ± 0.016

4.998 ± 0.019

2.468 ± 0.007

5.538 ± 0.015

5.995 ± 0.021

9.658 ± 0.021

Met

Asn

Gln

Pro

Arg

Ser

Thr

Val

Trp

Tyr

2.409 ± 0.009

4.995 ± 0.013

4.355 ± 0.019

4.27 ± 0.013

5.648 ± 0.018

8.379 ± 0.02

5.296 ± 0.014

6.421 ± 0.012

1.217 ± 0.006

3.092 ± 0.011
Note: For amino acid frequency statistics the error has been estimated with the bootstraping (x100) at the protein level

Most of the basic statistics you can see at this page can be downloaded from this CSV file

For dipeptide frequency statistics click here
See this proteome in: uniprot_link
Proteome-pI is available under Creative Commons Attribution-NoDerivs license, for more details see here

Reference: Kozlowski LP. Proteome-pI 2.0: Proteome Isoelectric Point Database Update. Nucleic Acids Res. 2021, doi: 10.1093/nar/gkab944 Contact: Lukasz P. Kozlowski