Vicingus serpentipes

Taxonomy: cellular organisms; Bacteria; FCB group; Bacteroidetes/Chlorobi group; Bacteroidetes; Flavobacteriia; Flavobacteriales; Vicingaceae; Vicingus

Average proteome isoelectric point is 6.34

Get precalculated fractions of proteins

Acidic
pI < 6.8
6.8-7.4
pI > 7.4
Basic
    
All



Virtual 2D-PAGE plot for 2518 proteins (isoelectric point calculated using IPC2_protein)

Get csv file with sequences according to given criteria:
        -     Method 

     -  kDa    
                                                                                      

* You can choose from 21 different methods for calculating isoelectric point

Summary statistics related to proteome-wise predictions


    
Protein with the lowest isoelectric point:
>tr|A0A5C6RWW8|A0A5C6RWW8_9FLAO CoA transferase OS=Vicingus serpentipes OX=1926625 GN=FRY74_00430 PE=4 SV=1
MM1 pKa = 7.71KK2 pKa = 10.27SYY4 pKa = 10.89LKK6 pKa = 10.57QIFLFATLIVTNSALAQQLDD26 pKa = 3.75WLGHH30 pKa = 4.95FRR32 pKa = 11.84STNHH36 pKa = 5.44VKK38 pKa = 9.04STAISTDD45 pKa = 2.85NDD47 pKa = 3.47GNIYY51 pKa = 10.35VVGTIEE57 pKa = 5.37IDD59 pKa = 3.84SADD62 pKa = 4.28LNPDD66 pKa = 2.76AGTYY70 pKa = 9.39YY71 pKa = 10.96LSPEE75 pKa = 4.11FSNAAFVCKK84 pKa = 10.1LDD86 pKa = 3.79SLGNFIWAKK95 pKa = 10.06SFGGGSSISPTSVAADD111 pKa = 3.64DD112 pKa = 4.1FGGVYY117 pKa = 10.04IGGSYY122 pKa = 10.6FNTVDD127 pKa = 4.42FDD129 pKa = 4.45PGLGVYY135 pKa = 10.43DD136 pKa = 3.38LTVFGGSDD144 pKa = 3.49LFLSKK149 pKa = 11.13LNVNGDD155 pKa = 3.76FEE157 pKa = 4.64WAFNAGSTSTDD168 pKa = 2.93AVTDD172 pKa = 3.53IAVDD176 pKa = 3.26IDD178 pKa = 3.81NNVYY182 pKa = 8.05ITGYY186 pKa = 10.42FDD188 pKa = 4.45YY189 pKa = 11.54ADD191 pKa = 4.55FDD193 pKa = 4.52PGAGWFALNPPEE205 pKa = 4.04KK206 pKa = 10.08AGYY209 pKa = 7.58IAKK212 pKa = 9.79YY213 pKa = 9.92KK214 pKa = 10.17PDD216 pKa = 3.41GSFVNAVDD224 pKa = 4.34FEE226 pKa = 5.49GDD228 pKa = 3.58GPSGSNSIAIAPNGSLYY245 pKa = 11.0VVGAFNSTIDD255 pKa = 3.62FDD257 pKa = 4.58PGVGTFNLTSISSNVDD273 pKa = 2.71IYY275 pKa = 11.38VCKK278 pKa = 10.48LDD280 pKa = 4.04TSLTFQWAKK289 pKa = 10.96SFGSSSADD297 pKa = 3.17NGHH300 pKa = 5.84TVSVSDD306 pKa = 3.61SDD308 pKa = 3.92EE309 pKa = 4.0PVITGGFWNTIDD321 pKa = 4.04VDD323 pKa = 4.37PGPSTYY329 pKa = 11.1NVTSNGLVDD338 pKa = 4.62NLLLKK343 pKa = 10.66LDD345 pKa = 3.8ASGNFMWANTYY356 pKa = 11.06GNAQTEE362 pKa = 4.39YY363 pKa = 11.03SLDD366 pKa = 3.26AAIAVNDD373 pKa = 4.91DD374 pKa = 3.34IYY376 pKa = 11.09ILGKK380 pKa = 10.43FIDD383 pKa = 4.84SIDD386 pKa = 3.56VDD388 pKa = 4.31GGPGTQLIASVSPSDD403 pKa = 4.03SYY405 pKa = 11.09IARR408 pKa = 11.84LDD410 pKa = 3.45GSGNLISSGQLGGPGSVSGKK430 pKa = 9.28GLCISNTQKK439 pKa = 10.32IYY441 pKa = 9.14HH442 pKa = 6.17TGIFSGSAEE451 pKa = 4.62LDD453 pKa = 3.3PSAGIDD459 pKa = 3.51SLTSLGLNDD468 pKa = 4.68SYY470 pKa = 11.4IQIAIPSAMVGLKK483 pKa = 9.54TISTEE488 pKa = 4.12TTKK491 pKa = 10.95KK492 pKa = 10.35EE493 pKa = 3.97LIKK496 pKa = 10.65IIDD499 pKa = 3.14IMGRR503 pKa = 11.84YY504 pKa = 9.26IKK506 pKa = 10.07DD507 pKa = 3.39QPNTLLIYY515 pKa = 10.19VYY517 pKa = 11.21SDD519 pKa = 2.97GTTEE523 pKa = 3.76KK524 pKa = 10.55VFRR527 pKa = 11.84VEE529 pKa = 3.78

Molecular weight: 56.05 kDa
Isoelectric point according different methods:





Protein with the highest isoelectric point:
>tr|A0A5C6S045|A0A5C6S045_9FLAO DUF368 domain-containing protein OS=Vicingus serpentipes OX=1926625 GN=FRY74_02015 PE=4 SV=1
MM1 pKa = 7.5AKK3 pKa = 10.25EE4 pKa = 3.94SMKK7 pKa = 10.47ARR9 pKa = 11.84EE10 pKa = 4.29RR11 pKa = 11.84KK12 pKa = 9.4RR13 pKa = 11.84EE14 pKa = 4.0AMVEE18 pKa = 3.95KK19 pKa = 10.81YY20 pKa = 10.44ADD22 pKa = 3.02KK23 pKa = 10.81RR24 pKa = 11.84AALKK28 pKa = 10.63AAGDD32 pKa = 3.42WDD34 pKa = 4.21ALQKK38 pKa = 10.78LPKK41 pKa = 9.8NSSKK45 pKa = 10.38VRR47 pKa = 11.84LHH49 pKa = 5.96NRR51 pKa = 11.84CKK53 pKa = 9.95LTGRR57 pKa = 11.84PRR59 pKa = 11.84GYY61 pKa = 9.01MRR63 pKa = 11.84QFGISRR69 pKa = 11.84VTFRR73 pKa = 11.84EE74 pKa = 3.92MASAGLIPGIKK85 pKa = 8.99KK86 pKa = 10.68ASWW89 pKa = 2.94

Molecular weight: 10.17 kDa
Isoelectric point according different methods:





Peptides (in silico digests for buttom-up proteomics)

Below you can find in silico digests of the whole proteome with Trypsin, Chymotrypsin, Trypsin+LysC, LysN, ArgC proteases suitable for different mass spec machines.

Try
ESI
ChTry
ESI
ArgC
ESI
LysN
ESI
TryLysC
ESI

Try
MALDI
ChTry
MALDI
ArgC
MALDI
LysN
MALDI
TryLysC
MALDI

Try
LTQ
ChTry
LTQ
ArgC
LTQ
LysN
LTQ
TryLysC
LTQ

Try
MSlow
ChTry
MSlow
ArgC
MSlow
LysN
MSlow
TryLysC
MSlow

Try
MShigh
ChTry
MShigh
ArgC
MShigh
LysN
MShigh
TryLysC
MShigh

General Statistics

Number of major isoforms

Number of additional isoforms

Number of all proteins

Number of amino acids

Min. Seq. Length

Max. Seq. Length

Avg. Seq. Length

Avg. Mol. Weight

2518

0

2518

911875

38

3426

362.1

40.75

Amino acid frequency

Ala

Cys

Asp

Glu

Phe

Gly

His

Ile

Lys

Leu

6.045 ± 0.055

0.91 ± 0.023

5.535 ± 0.04

6.593 ± 0.065

5.168 ± 0.045

6.5 ± 0.06

1.6 ± 0.022

8.521 ± 0.05

7.922 ± 0.086

9.039 ± 0.055

Met

Asn

Gln

Pro

Arg

Ser

Thr

Val

Trp

Tyr

2.046 ± 0.025

6.885 ± 0.047

3.277 ± 0.032

3.152 ± 0.026

2.815 ± 0.036

6.774 ± 0.046

5.844 ± 0.077

6.155 ± 0.038

0.987 ± 0.016

4.231 ± 0.034
Note: For amino acid frequency statistics the error has been estimated with the bootstraping (x100) at the protein level

Most of the basic statistics you can see at this page can be downloaded from this CSV file

For dipeptide frequency statistics click here
See this proteome in: uniprot_link
Proteome-pI is available under Creative Commons Attribution-NoDerivs license, for more details see here

Reference: Kozlowski LP. Proteome-pI 2.0: Proteome Isoelectric Point Database Update. Nucleic Acids Res. 2021, doi: 10.1093/nar/gkab944 Contact: Lukasz P. Kozlowski