Cyclophragma undans nucleopolyhedrovirus

Taxonomy: Viruses; Naldaviricetes; Lefavirales; Baculoviridae; Alphabaculovirus

Average proteome isoelectric point is 6.75

Get precalculated fractions of proteins

Acidic
pI < 6.8
6.8-7.4
pI > 7.4
Basic
    
All



Virtual 2D-PAGE plot for 147 proteins (isoelectric point calculated using IPC2_protein)

Get csv file with sequences according to given criteria:
        -     Method 

     -  kDa    
                                                                                      

* You can choose from 21 different methods for calculating isoelectric point

Summary statistics related to proteome-wise predictions


    
Protein with the lowest isoelectric point:
>tr|A0A288Q7F6|A0A288Q7F6_9ABAC Ie1 OS=Cyclophragma undans nucleopolyhedrovirus OX=1906244 PE=4 SV=1
MM1 pKa = 7.27NLDD4 pKa = 3.41LPYY7 pKa = 10.76YY8 pKa = 10.51RR9 pKa = 11.84LGNHH13 pKa = 6.15EE14 pKa = 4.38KK15 pKa = 10.79VEE17 pKa = 4.14YY18 pKa = 10.29IPLKK22 pKa = 10.59LALNDD27 pKa = 5.06DD28 pKa = 4.08ISNEE32 pKa = 3.98QQQQQHH38 pKa = 4.9QKK40 pKa = 8.98DD41 pKa = 3.99TFVHH45 pKa = 6.88DD46 pKa = 3.81EE47 pKa = 4.03SGANGGVIIYY57 pKa = 10.04NAGAEE62 pKa = 4.06PAMPVAFIILISLAAFVALFLLLYY86 pKa = 9.9IIYY89 pKa = 9.24YY90 pKa = 8.95YY91 pKa = 11.04VVLRR95 pKa = 11.84EE96 pKa = 3.91QQQQYY101 pKa = 11.23SDD103 pKa = 4.25DD104 pKa = 4.02NFDD107 pKa = 3.75IDD109 pKa = 4.65IEE111 pKa = 4.21PSSLIFNKK119 pKa = 9.69FDD121 pKa = 3.13

Molecular weight: 13.93 kDa
Isoelectric point according different methods:





Protein with the highest isoelectric point:
>tr|A0A288Q7J0|A0A288Q7J0_9ABAC Cg30 OS=Cyclophragma undans nucleopolyhedrovirus OX=1906244 PE=4 SV=1
MM1 pKa = 7.46VYY3 pKa = 9.47TRR5 pKa = 11.84RR6 pKa = 11.84LSSPSSYY13 pKa = 8.8TRR15 pKa = 11.84RR16 pKa = 11.84RR17 pKa = 11.84PSYY20 pKa = 8.79RR21 pKa = 11.84RR22 pKa = 11.84SRR24 pKa = 11.84SMEE27 pKa = 3.33YY28 pKa = 9.55RR29 pKa = 11.84RR30 pKa = 11.84RR31 pKa = 11.84PGRR34 pKa = 11.84PRR36 pKa = 11.84SPGRR40 pKa = 11.84PRR42 pKa = 11.84SPGRR46 pKa = 11.84ARR48 pKa = 11.84SQNGRR53 pKa = 11.84YY54 pKa = 9.23KK55 pKa = 10.5RR56 pKa = 11.84RR57 pKa = 11.84NRR59 pKa = 11.84SSGGRR64 pKa = 11.84RR65 pKa = 11.84RR66 pKa = 11.84SYY68 pKa = 9.2RR69 pKa = 11.84TRR71 pKa = 11.84RR72 pKa = 11.84YY73 pKa = 9.88

Molecular weight: 8.99 kDa
Isoelectric point according different methods:





Peptides (in silico digests for buttom-up proteomics)

Below you can find in silico digests of the whole proteome with Trypsin, Chymotrypsin, Trypsin+LysC, LysN, ArgC proteases suitable for different mass spec machines.

Try
ESI
ChTry
ESI
ArgC
ESI
LysN
ESI
TryLysC
ESI

Try
MALDI
ChTry
MALDI
ArgC
MALDI
LysN
MALDI
TryLysC
MALDI

Try
LTQ
ChTry
LTQ
ArgC
LTQ
LysN
LTQ
TryLysC
LTQ

Try
MSlow
ChTry
MSlow
ArgC
MSlow
LysN
MSlow
TryLysC
MSlow

Try
MShigh
ChTry
MShigh
ArgC
MShigh
LysN
MShigh
TryLysC
MShigh

General Statistics

Number of major isoforms

Number of additional isoforms

Number of all proteins

Number of amino acids

Min. Seq. Length

Max. Seq. Length

Avg. Seq. Length

Avg. Mol. Weight

147

0

147

41972

43

1265

285.5

32.57

Amino acid frequency

Ala

Cys

Asp

Glu

Phe

Gly

His

Ile

Lys

Leu

6.974 ± 0.232

2.404 ± 0.116

6.311 ± 0.148

5.051 ± 0.156

4.644 ± 0.123

3.764 ± 0.137

2.506 ± 0.095

6.452 ± 0.133

6.266 ± 0.26

9.128 ± 0.153

Met

Asn

Gln

Pro

Arg

Ser

Thr

Val

Trp

Tyr

2.604 ± 0.08

7.364 ± 0.195

3.629 ± 0.189

3.676 ± 0.197

5.082 ± 0.186

6.402 ± 0.177

5.885 ± 0.155

6.516 ± 0.176

0.751 ± 0.055

4.501 ± 0.107
Note: For amino acid frequency statistics the error has been estimated with the bootstraping (x100) at the protein level

Most of the basic statistics you can see at this page can be downloaded from this CSV file

For dipeptide frequency statistics click here
See this proteome in: uniprot_link
Proteome-pI is available under Creative Commons Attribution-NoDerivs license, for more details see here

Reference: Kozlowski LP. Proteome-pI 2.0: Proteome Isoelectric Point Database Update. Nucleic Acids Res. 2021, doi: 10.1093/nar/gkab944 Contact: Lukasz P. Kozlowski