Serratia odorifera DSM 4582

Taxonomy: cellular organisms; Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacterales; Yersiniaceae; Serratia; Serratia odorifera

Average proteome isoelectric point is 6.75

Get precalculated fractions of proteins

Acidic
pI < 6.8
6.8-7.4
pI > 7.4
Basic
    
All



Virtual 2D-PAGE plot for 5121 proteins (isoelectric point calculated using IPC2_protein)

Get csv file with sequences according to given criteria:
        -     Method 

     -  kDa    
                                                                                      

* You can choose from 21 different methods for calculating isoelectric point

Summary statistics related to proteome-wise predictions


    
Protein with the lowest isoelectric point:
>tr|D4E3H3|D4E3H3_SEROD Fatty acid oxidation complex subunit alpha OS=Serratia odorifera DSM 4582 OX=667129 GN=fadJ PE=3 SV=1
MM1 pKa = 8.18DD2 pKa = 4.43NTDD5 pKa = 3.4CTASYY10 pKa = 10.71SQVFTDD16 pKa = 3.76QQQAQQALAALTDD29 pKa = 3.43KK30 pKa = 11.12ARR32 pKa = 11.84AVEE35 pKa = 4.99SDD37 pKa = 3.27PCDD40 pKa = 3.31INSSINPVDD49 pKa = 3.88GGFQLDD55 pKa = 3.21VDD57 pKa = 6.34FIFCCQAEE65 pKa = 4.29TLIFQLGLRR74 pKa = 4.32

Molecular weight: 8.09 kDa
Isoelectric point according different methods:





Protein with the highest isoelectric point:
>tr|D4E049|D4E049_SEROD Homoserine/Threonine efflux protein OS=Serratia odorifera DSM 4582 OX=667129 GN=rhtB2 PE=4 SV=1
MM1 pKa = 7.31KK2 pKa = 10.17RR3 pKa = 11.84NRR5 pKa = 11.84SHH7 pKa = 7.03GFRR10 pKa = 11.84ARR12 pKa = 11.84MATKK16 pKa = 10.4NGRR19 pKa = 11.84QVLARR24 pKa = 11.84RR25 pKa = 11.84RR26 pKa = 11.84AKK28 pKa = 10.41GRR30 pKa = 11.84TRR32 pKa = 11.84LSVSKK37 pKa = 10.96

Molecular weight: 4.34 kDa
Isoelectric point according different methods:





Peptides (in silico digests for buttom-up proteomics)

Below you can find in silico digests of the whole proteome with Trypsin, Chymotrypsin, Trypsin+LysC, LysN, ArgC proteases suitable for different mass spec machines.

Try
ESI
ChTry
ESI
ArgC
ESI
LysN
ESI
TryLysC
ESI

Try
MALDI
ChTry
MALDI
ArgC
MALDI
LysN
MALDI
TryLysC
MALDI

Try
LTQ
ChTry
LTQ
ArgC
LTQ
LysN
LTQ
TryLysC
LTQ

Try
MSlow
ChTry
MSlow
ArgC
MSlow
LysN
MSlow
TryLysC
MSlow

Try
MShigh
ChTry
MShigh
ArgC
MShigh
LysN
MShigh
TryLysC
MShigh

General Statistics

Number of major isoforms

Number of additional isoforms

Number of all proteins

Number of amino acids

Min. Seq. Length

Max. Seq. Length

Avg. Seq. Length

Avg. Mol. Weight

5121

0

5121

1498009

31

3986

292.5

32.24

Amino acid frequency

Ala

Cys

Asp

Glu

Phe

Gly

His

Ile

Lys

Leu

10.44 ± 0.042

1.074 ± 0.013

5.16 ± 0.027

5.124 ± 0.034

3.757 ± 0.028

7.64 ± 0.035

2.26 ± 0.016

5.52 ± 0.034

3.805 ± 0.034

11.222 ± 0.043

Met

Asn

Gln

Pro

Arg

Ser

Thr

Val

Trp

Tyr

2.705 ± 0.016

3.543 ± 0.026

4.581 ± 0.024

5.091 ± 0.031

5.93 ± 0.032

5.821 ± 0.027

5.073 ± 0.025

6.955 ± 0.027

1.46 ± 0.017

2.837 ± 0.019
Note: For amino acid frequency statistics the error has been estimated with the bootstraping (x100) at the protein level

Most of the basic statistics you can see at this page can be downloaded from this CSV file

For dipeptide frequency statistics click here
See this proteome in: uniprot_link
Proteome-pI is available under Creative Commons Attribution-NoDerivs license, for more details see here

Reference: Kozlowski LP. Proteome-pI 2.0: Proteome Isoelectric Point Database Update. Nucleic Acids Res. 2021, doi: 10.1093/nar/gkab944 Contact: Lukasz P. Kozlowski