Canis familiaris papillomavirus 7

Taxonomy: Viruses; Monodnaviria; Shotokuvirae; Cossaviricota; Papovaviricetes; Zurhausenvirales; Papillomaviridae; Firstpapillomavirinae; Taupapillomavirus; Taupapillomavirus 1

Average proteome isoelectric point is 6.2

Get precalculated fractions of proteins

Acidic
pI < 6.8
6.8-7.4
pI > 7.4
Basic
    
All



Virtual 2D-PAGE plot for 7 proteins (isoelectric point calculated using IPC2_protein)

Get csv file with sequences according to given criteria:
        -     Method 

     -  kDa    
                                                                                      

* You can choose from 21 different methods for calculating isoelectric point

Summary statistics related to proteome-wise predictions


    
Protein with the lowest isoelectric point:
>tr|C8YJK0|C8YJK0_9PAPI Replication protein E1 OS=Canis familiaris papillomavirus 7 OX=2759772 GN=E1 PE=3 SV=1
MM1 pKa = 7.75RR2 pKa = 11.84GSEE5 pKa = 4.07SDD7 pKa = 3.33VRR9 pKa = 11.84DD10 pKa = 3.33IVLDD14 pKa = 3.4LHH16 pKa = 6.79EE17 pKa = 5.51LVLPQNLLSSEE28 pKa = 4.11VLEE31 pKa = 4.54TEE33 pKa = 4.15EE34 pKa = 4.82EE35 pKa = 4.31EE36 pKa = 4.57PEE38 pKa = 4.32PEE40 pKa = 3.92PGRR43 pKa = 11.84YY44 pKa = 8.06RR45 pKa = 11.84VVTCCNLCHH54 pKa = 6.64SPLRR58 pKa = 11.84LFIEE62 pKa = 4.68SADD65 pKa = 3.71EE66 pKa = 4.14GQVRR70 pKa = 11.84IFHH73 pKa = 6.04QLLLDD78 pKa = 3.91GLGILCAVCYY88 pKa = 7.75RR89 pKa = 11.84THH91 pKa = 6.59CCDD94 pKa = 2.63GRR96 pKa = 11.84RR97 pKa = 11.84RR98 pKa = 3.61

Molecular weight: 11.19 kDa
Isoelectric point according different methods:





Protein with the highest isoelectric point:
>tr|C8YJK2|C8YJK2_9PAPI E4 (Fragment) OS=Canis familiaris papillomavirus 7 OX=2759772 PE=4 SV=1
MM1 pKa = 7.22MEE3 pKa = 4.0SLGRR7 pKa = 11.84SFDD10 pKa = 3.58VLQQVMLVHH19 pKa = 5.99YY20 pKa = 9.52EE21 pKa = 3.98RR22 pKa = 11.84GSKK25 pKa = 10.15RR26 pKa = 11.84LSDD29 pKa = 4.62QIIFWEE35 pKa = 4.16AVRR38 pKa = 11.84RR39 pKa = 11.84EE40 pKa = 3.98NALLHH45 pKa = 5.37YY46 pKa = 10.26ARR48 pKa = 11.84KK49 pKa = 9.36QRR51 pKa = 11.84IARR54 pKa = 11.84LGYY57 pKa = 8.53TPVPSSATSEE67 pKa = 3.97AAAKK71 pKa = 10.16NAIKK75 pKa = 8.25MTLLLTSLNEE85 pKa = 3.98SEE87 pKa = 5.2YY88 pKa = 11.04KK89 pKa = 10.62DD90 pKa = 4.47EE91 pKa = 4.57PWTMSDD97 pKa = 3.17TSLEE101 pKa = 3.97MLQCKK106 pKa = 9.84PKK108 pKa = 10.74GCFKK112 pKa = 10.83KK113 pKa = 10.48RR114 pKa = 11.84GFTVHH119 pKa = 6.23VLFDD123 pKa = 4.31GDD125 pKa = 4.04PGNSFPYY132 pKa = 9.46TSWGEE137 pKa = 3.67IYY139 pKa = 10.55YY140 pKa = 10.79QNLNDD145 pKa = 3.63KK146 pKa = 9.25WIKK149 pKa = 9.84TEE151 pKa = 4.06GKK153 pKa = 9.59VDD155 pKa = 3.76YY156 pKa = 10.92DD157 pKa = 3.27GLYY160 pKa = 8.86YY161 pKa = 10.35TDD163 pKa = 4.23EE164 pKa = 5.85DD165 pKa = 4.5GEE167 pKa = 4.18KK168 pKa = 10.44LYY170 pKa = 11.51YY171 pKa = 9.31EE172 pKa = 4.7TFAKK176 pKa = 10.62DD177 pKa = 3.11AMRR180 pKa = 11.84FGTTGMWKK188 pKa = 9.11VCYY191 pKa = 9.97KK192 pKa = 9.97STVLSALVSSSGTPAPSSVLWSQEE216 pKa = 3.17WARR219 pKa = 11.84EE220 pKa = 4.06GGLEE224 pKa = 4.14TQNPPVPATSDD235 pKa = 3.05SRR237 pKa = 11.84QPEE240 pKa = 4.27SSVSHH245 pKa = 6.8ASGTSTGSFARR256 pKa = 11.84PGGEE260 pKa = 3.98ACSSTPYY267 pKa = 10.27RR268 pKa = 11.84RR269 pKa = 11.84GQEE272 pKa = 3.84GGRR275 pKa = 11.84GRR277 pKa = 11.84GRR279 pKa = 11.84GRR281 pKa = 11.84GRR283 pKa = 11.84GRR285 pKa = 11.84GRR287 pKa = 11.84GRR289 pKa = 11.84PAGRR293 pKa = 11.84QEE295 pKa = 4.18GTPGSPSRR303 pKa = 11.84STLPCSVLGRR313 pKa = 11.84QGAQKK318 pKa = 9.94RR319 pKa = 11.84QRR321 pKa = 11.84EE322 pKa = 4.04ASPNRR327 pKa = 11.84GSEE330 pKa = 3.74QDD332 pKa = 3.06RR333 pKa = 11.84GGGEE337 pKa = 4.19GGQGEE342 pKa = 4.73SGEE345 pKa = 4.44SASNEE350 pKa = 4.0PEE352 pKa = 4.17STNSPRR358 pKa = 11.84LPRR361 pKa = 11.84LSTPGSVSRR370 pKa = 11.84VGGPCRR376 pKa = 11.84PSPRR380 pKa = 11.84KK381 pKa = 9.31RR382 pKa = 11.84APPRR386 pKa = 11.84LSPAVSYY393 pKa = 10.38RR394 pKa = 11.84QVGGGCGGSEE404 pKa = 4.2GQGKK408 pKa = 9.16LLGGCTEE415 pKa = 4.49GEE417 pKa = 4.17DD418 pKa = 3.88RR419 pKa = 11.84PTPILIFRR427 pKa = 11.84GDD429 pKa = 3.76GNTQKK434 pKa = 10.32CWRR437 pKa = 11.84RR438 pKa = 11.84RR439 pKa = 11.84LRR441 pKa = 11.84IRR443 pKa = 11.84HH444 pKa = 5.33SSRR447 pKa = 11.84YY448 pKa = 7.85MCASTGFSWTIPRR461 pKa = 11.84GPNTVGRR468 pKa = 11.84HH469 pKa = 4.45RR470 pKa = 11.84MLLAFNSDD478 pKa = 3.26SQRR481 pKa = 11.84AAFLEE486 pKa = 4.6TVTIPRR492 pKa = 11.84GLEE495 pKa = 3.69FSEE498 pKa = 5.88GYY500 pKa = 10.28LDD502 pKa = 5.12SII504 pKa = 5.19

Molecular weight: 55.22 kDa
Isoelectric point according different methods:





Peptides (in silico digests for buttom-up proteomics)

Below you can find in silico digests of the whole proteome with Trypsin, Chymotrypsin, Trypsin+LysC, LysN, ArgC proteases suitable for different mass spec machines.

Try
ESI
ChTry
ESI
ArgC
ESI
LysN
ESI
TryLysC
ESI

Try
MALDI
ChTry
MALDI
ArgC
MALDI
LysN
MALDI
TryLysC
MALDI

Try
LTQ
ChTry
LTQ
ArgC
LTQ
LysN
LTQ
TryLysC
LTQ

Try
MSlow
ChTry
MSlow
ArgC
MSlow
LysN
MSlow
TryLysC
MSlow

Try
MShigh
ChTry
MShigh
ArgC
MShigh
LysN
MShigh
TryLysC
MShigh

General Statistics

Number of major isoforms

Number of additional isoforms

Number of all proteins

Number of amino acids

Min. Seq. Length

Max. Seq. Length

Avg. Seq. Length

Avg. Mol. Weight

7

0

7

2603

98

605

371.9

41.26

Amino acid frequency

Ala

Cys

Asp

Glu

Phe

Gly

His

Ile

Lys

Leu

5.34 ± 0.324

2.536 ± 0.737

5.839 ± 0.708

6.531 ± 0.632

4.034 ± 0.684

8.529 ± 1.164

2.113 ± 0.356

3.765 ± 0.732

4.495 ± 0.701

8.759 ± 1.019

Met

Asn

Gln

Pro

Arg

Ser

Thr

Val

Trp

Tyr

1.614 ± 0.396

3.803 ± 0.744

6.954 ± 1.039

4.495 ± 0.561

6.723 ± 1.055

8.951 ± 0.903

5.839 ± 0.677

5.532 ± 0.717

1.268 ± 0.329

2.881 ± 0.415
Note: For amino acid frequency statistics the error has been estimated with the bootstraping (x100) at the protein level

Most of the basic statistics you can see at this page can be downloaded from this CSV file

For dipeptide frequency statistics click here
See this proteome in: uniprot_link
Proteome-pI is available under Creative Commons Attribution-NoDerivs license, for more details see here

Reference: Kozlowski LP. Proteome-pI 2.0: Proteome Isoelectric Point Database Update. Nucleic Acids Res. 2021, doi: 10.1093/nar/gkab944 Contact: Lukasz P. Kozlowski