Marinicella litoralis

Taxonomy: cellular organisms; Bacteria; Proteobacteria; Gammaproteobacteria; Oceanospirillales; Alcanivoracaceae; Marinicella

Average proteome isoelectric point is 6.22

Get precalculated fractions of proteins

Acidic
pI < 6.8
6.8-7.4
pI > 7.4
Basic
    
All



Virtual 2D-PAGE plot for 2897 proteins (isoelectric point calculated using IPC2_protein)

Get csv file with sequences according to given criteria:
        -     Method 

     -  kDa    
                                                                                      

* You can choose from 21 different methods for calculating isoelectric point

Summary statistics related to proteome-wise predictions


    
Protein with the lowest isoelectric point:
>tr|A0A4R6XMW7|A0A4R6XMW7_9GAMM Putative ABC transport system permease protein OS=Marinicella litoralis OX=644220 GN=C8D91_2016 PE=4 SV=1
MM1 pKa = 7.55FFLCFILLSLISLNVTAQNYY21 pKa = 9.3FSDD24 pKa = 3.81VSNQAGVAINHH35 pKa = 5.32QLKK38 pKa = 10.63SGEE41 pKa = 4.18LGMGQGWVDD50 pKa = 3.64VNNDD54 pKa = 3.15GYY56 pKa = 11.37EE57 pKa = 4.12DD58 pKa = 4.92LMLTNQSGEE67 pKa = 3.83NYY69 pKa = 10.51LFINQQDD76 pKa = 3.55GSFVEE81 pKa = 4.23MAQYY85 pKa = 11.47NDD87 pKa = 2.83IKK89 pKa = 11.13LPLSQDD95 pKa = 3.26FGVSVTDD102 pKa = 3.78FNNDD106 pKa = 2.48GFQDD110 pKa = 3.81LFIASWGVNKK120 pKa = 10.21LLKK123 pKa = 10.39NINGSSFLDD132 pKa = 3.66VSDD135 pKa = 3.94EE136 pKa = 4.03MGFVDD141 pKa = 4.36NSYY144 pKa = 11.07SIASTWADD152 pKa = 2.94INQDD156 pKa = 3.04GWLDD160 pKa = 3.92LYY162 pKa = 10.74VVNYY166 pKa = 10.36SVEE169 pKa = 4.08NDD171 pKa = 2.98SDD173 pKa = 3.76EE174 pKa = 4.71ADD176 pKa = 3.41RR177 pKa = 11.84MYY179 pKa = 11.32LNNQGANFIDD189 pKa = 4.05VSSDD193 pKa = 3.03LTPFTNLTKK202 pKa = 10.6HH203 pKa = 5.5GLAVQFIDD211 pKa = 4.73FDD213 pKa = 3.86MDD215 pKa = 3.47NDD217 pKa = 3.23MDD219 pKa = 4.9LYY221 pKa = 11.14VVNDD225 pKa = 3.7KK226 pKa = 11.4LEE228 pKa = 4.02QNTLWRR234 pKa = 11.84NDD236 pKa = 3.45GPGSSACGVYY246 pKa = 10.34VCFTDD251 pKa = 5.29VSALTQTNRR260 pKa = 11.84AVFGMGIAIADD271 pKa = 3.74YY272 pKa = 11.23DD273 pKa = 4.43LDD275 pKa = 4.97GDD277 pKa = 3.83FDD279 pKa = 5.77FYY281 pKa = 11.08FSSIAEE287 pKa = 4.05QVLLQSQISQGSAVFVEE304 pKa = 4.45QSNPAGLNFNATGWATIFADD324 pKa = 4.43FNNDD328 pKa = 3.45QFPDD332 pKa = 3.7AYY334 pKa = 10.94LATANNTPSKK344 pKa = 10.49RR345 pKa = 11.84DD346 pKa = 3.27RR347 pKa = 11.84LYY349 pKa = 11.45LNNQSQQFTDD359 pKa = 3.52VTALSGIEE367 pKa = 4.09DD368 pKa = 4.52LYY370 pKa = 9.13MTVGAAKK377 pKa = 10.54GDD379 pKa = 3.63FDD381 pKa = 5.55NDD383 pKa = 3.57GKK385 pKa = 11.42VDD387 pKa = 4.03LVVGNWGEE395 pKa = 3.96NYY397 pKa = 9.32MLYY400 pKa = 10.87KK401 pKa = 9.84NTSLDD406 pKa = 3.36ANNWIKK412 pKa = 10.61IKK414 pKa = 10.82LIGGSGINQLAIGSKK429 pKa = 9.81VAVNTSNGQEE439 pKa = 4.17LVDD442 pKa = 3.65QLVSGGSHH450 pKa = 6.28GAGNSLVLHH459 pKa = 6.63FGLADD464 pKa = 3.53EE465 pKa = 5.29TIEE468 pKa = 4.29SVKK471 pKa = 9.45ITWPNGIISLLSGLSANQMHH491 pKa = 6.97TLTYY495 pKa = 9.57PGDD498 pKa = 4.24GIFMQGFEE506 pKa = 4.14

Molecular weight: 55.45 kDa
Isoelectric point according different methods:





Protein with the highest isoelectric point:
>tr|A0A4R6XV76|A0A4R6XV76_9GAMM RND family efflux transporter MFP subunit OS=Marinicella litoralis OX=644220 GN=C8D91_0928 PE=3 SV=1
MM1 pKa = 7.45KK2 pKa = 9.61RR3 pKa = 11.84TFQPSNLKK11 pKa = 10.08RR12 pKa = 11.84ARR14 pKa = 11.84THH16 pKa = 6.05GFRR19 pKa = 11.84ARR21 pKa = 11.84MKK23 pKa = 8.55TAGGRR28 pKa = 11.84AVINARR34 pKa = 11.84RR35 pKa = 11.84AKK37 pKa = 9.74GRR39 pKa = 11.84KK40 pKa = 8.8RR41 pKa = 11.84LAAA44 pKa = 4.42

Molecular weight: 4.99 kDa
Isoelectric point according different methods:





Peptides (in silico digests for buttom-up proteomics)

Below you can find in silico digests of the whole proteome with Trypsin, Chymotrypsin, Trypsin+LysC, LysN, ArgC proteases suitable for different mass spec machines.

Try
ESI
ChTry
ESI
ArgC
ESI
LysN
ESI
TryLysC
ESI

Try
MALDI
ChTry
MALDI
ArgC
MALDI
LysN
MALDI
TryLysC
MALDI

Try
LTQ
ChTry
LTQ
ArgC
LTQ
LysN
LTQ
TryLysC
LTQ

Try
MSlow
ChTry
MSlow
ArgC
MSlow
LysN
MSlow
TryLysC
MSlow

Try
MShigh
ChTry
MShigh
ArgC
MShigh
LysN
MShigh
TryLysC
MShigh

General Statistics

Number of major isoforms

Number of additional isoforms

Number of all proteins

Number of amino acids

Min. Seq. Length

Max. Seq. Length

Avg. Seq. Length

Avg. Mol. Weight

2897

0

2897

1015597

26

4547

350.6

39.03

Amino acid frequency

Ala

Cys

Asp

Glu

Phe

Gly

His

Ile

Lys

Leu

8.047 ± 0.046

0.94 ± 0.015

5.896 ± 0.041

5.589 ± 0.05

4.373 ± 0.037

6.738 ± 0.047

2.397 ± 0.026

6.722 ± 0.031

5.635 ± 0.056

9.972 ± 0.056

Met

Asn

Gln

Pro

Arg

Ser

Thr

Val

Trp

Tyr

2.707 ± 0.027

5.172 ± 0.044

3.847 ± 0.03

5.02 ± 0.038

3.689 ± 0.033

6.579 ± 0.044

5.433 ± 0.045

6.804 ± 0.043

1.325 ± 0.018

3.117 ± 0.029
Note: For amino acid frequency statistics the error has been estimated with the bootstraping (x100) at the protein level

Most of the basic statistics you can see at this page can be downloaded from this CSV file

For dipeptide frequency statistics click here
See this proteome in: uniprot_link
Proteome-pI is available under Creative Commons Attribution-NoDerivs license, for more details see here

Reference: Kozlowski LP. Proteome-pI 2.0: Proteome Isoelectric Point Database Update. Nucleic Acids Res. 2021, doi: 10.1093/nar/gkab944 Contact: Lukasz P. Kozlowski