Thiosulfatimonas sediminis

Taxonomy: cellular organisms; Bacteria; Proteobacteria; Gammaproteobacteria; Thiotrichales; Piscirickettsiaceae; Thiosulfatimonas

Average proteome isoelectric point is 6.27

Get precalculated fractions of proteins

Acidic
pI < 6.8
6.8-7.4
pI > 7.4
Basic
    
All



Virtual 2D-PAGE plot for 2439 proteins (isoelectric point calculated using IPC2_protein)

Get csv file with sequences according to given criteria:
        -     Method 

     -  kDa    
                                                                                      

* You can choose from 21 different methods for calculating isoelectric point

Summary statistics related to proteome-wise predictions


    
Protein with the lowest isoelectric point:
>tr|A0A6F8PWB1|A0A6F8PWB1_9GAMM Phenylalanine--tRNA ligase alpha subunit OS=Thiosulfatimonas sediminis OX=2675054 GN=pheS PE=3 SV=1
MM1 pKa = 7.64GYY3 pKa = 10.67DD4 pKa = 3.64KK5 pKa = 11.29DD6 pKa = 3.93VDD8 pKa = 3.37TGGYY12 pKa = 9.07VEE14 pKa = 6.19YY15 pKa = 10.6IGAWDD20 pKa = 4.76LNDD23 pKa = 5.08DD24 pKa = 4.36YY25 pKa = 11.44IPYY28 pKa = 10.42GSFGFTHH35 pKa = 7.44KK36 pKa = 10.38ISANTQWDD44 pKa = 3.32IGSEE48 pKa = 4.25VALDD52 pKa = 3.72NPGQDD57 pKa = 3.34FEE59 pKa = 5.27IFFGLIQRR67 pKa = 11.84DD68 pKa = 3.44

Molecular weight: 7.69 kDa
Isoelectric point according different methods:





Protein with the highest isoelectric point:
>tr|A0A6F8PRC4|A0A6F8PRC4_9GAMM Thiol:disulfide interchange protein OS=Thiosulfatimonas sediminis OX=2675054 GN=dsbA PE=3 SV=1
MM1 pKa = 7.45KK2 pKa = 9.51RR3 pKa = 11.84TFQPSVIKK11 pKa = 10.49RR12 pKa = 11.84ARR14 pKa = 11.84THH16 pKa = 5.92GFRR19 pKa = 11.84ARR21 pKa = 11.84MATKK25 pKa = 10.37NGRR28 pKa = 11.84KK29 pKa = 9.16VLAARR34 pKa = 11.84RR35 pKa = 11.84AKK37 pKa = 9.89GRR39 pKa = 11.84KK40 pKa = 8.92RR41 pKa = 11.84LIPP44 pKa = 4.02

Molecular weight: 5.12 kDa
Isoelectric point according different methods:





Peptides (in silico digests for buttom-up proteomics)

Below you can find in silico digests of the whole proteome with Trypsin, Chymotrypsin, Trypsin+LysC, LysN, ArgC proteases suitable for different mass spec machines.

Try
ESI
ChTry
ESI
ArgC
ESI
LysN
ESI
TryLysC
ESI

Try
MALDI
ChTry
MALDI
ArgC
MALDI
LysN
MALDI
TryLysC
MALDI

Try
LTQ
ChTry
LTQ
ArgC
LTQ
LysN
LTQ
TryLysC
LTQ

Try
MSlow
ChTry
MSlow
ArgC
MSlow
LysN
MSlow
TryLysC
MSlow

Try
MShigh
ChTry
MShigh
ArgC
MShigh
LysN
MShigh
TryLysC
MShigh

General Statistics

Number of major isoforms

Number of additional isoforms

Number of all proteins

Number of amino acids

Min. Seq. Length

Max. Seq. Length

Avg. Seq. Length

Avg. Mol. Weight

2439

0

2439

786091

43

3553

322.3

35.89

Amino acid frequency

Ala

Cys

Asp

Glu

Phe

Gly

His

Ile

Lys

Leu

9.182 ± 0.063

0.846 ± 0.015

5.405 ± 0.052

6.13 ± 0.05

4.089 ± 0.037

6.494 ± 0.054

2.239 ± 0.029

6.195 ± 0.046

5.274 ± 0.057

10.806 ± 0.068

Met

Asn

Gln

Pro

Arg

Ser

Thr

Val

Trp

Tyr

2.67 ± 0.026

4.283 ± 0.045

4.057 ± 0.035

5.847 ± 0.059

4.541 ± 0.043

6.122 ± 0.041

5.053 ± 0.063

6.623 ± 0.045

1.261 ± 0.023

2.883 ± 0.029
Note: For amino acid frequency statistics the error has been estimated with the bootstraping (x100) at the protein level

Most of the basic statistics you can see at this page can be downloaded from this CSV file

For dipeptide frequency statistics click here
See this proteome in: uniprot_link
Proteome-pI is available under Creative Commons Attribution-NoDerivs license, for more details see here

Reference: Kozlowski LP. Proteome-pI 2.0: Proteome Isoelectric Point Database Update. Nucleic Acids Res. 2021, doi: 10.1093/nar/gkab944 Contact: Lukasz P. Kozlowski