Corynebacterium urealyticum (strain ATCC 43042 / DSM 7109)

Taxonomy: cellular organisms; Bacteria; Terrabacteria group; Actinobacteria; Actinomycetia; Corynebacteriales; Corynebacteriaceae; Corynebacterium; Corynebacterium urealyticum

Average proteome isoelectric point is 6.1

Get precalculated fractions of proteins

Acidic
pI < 6.8
6.8-7.4
pI > 7.4
Basic
    
All



Virtual 2D-PAGE plot for 2011 proteins (isoelectric point calculated using IPC2_protein)

Get csv file with sequences according to given criteria:
        -     Method 

     -  kDa    
                                                                                      

* You can choose from 21 different methods for calculating isoelectric point

Summary statistics related to proteome-wise predictions


    
Protein with the lowest isoelectric point:
>tr|B1VGL6|B1VGL6_CORU7 Probable nicotinate-nucleotide adenylyltransferase OS=Corynebacterium urealyticum (strain ATCC 43042 / DSM 7109) OX=504474 GN=nadD PE=3 SV=1
MM1 pKa = 7.02VLSAACANFRR11 pKa = 11.84GMTKK15 pKa = 10.06PQDD18 pKa = 3.37HH19 pKa = 7.0HH20 pKa = 7.19PDD22 pKa = 3.31DD23 pKa = 4.3TGAEE27 pKa = 4.3GGDD30 pKa = 3.37ASGPQPPQYY39 pKa = 9.84RR40 pKa = 11.84RR41 pKa = 11.84PGDD44 pKa = 3.47TPTADD49 pKa = 3.24GSSQQGANPWAQPGAGPSAQQGAGQWGSQGSGQWGQAGAGYY90 pKa = 9.95GAGASQQWAQQNPYY104 pKa = 9.15GAQGQSAQWQGQDD117 pKa = 3.87YY118 pKa = 9.71GAQGYY123 pKa = 9.37NNQGYY128 pKa = 10.14GGPNYY133 pKa = 10.34GNQGYY138 pKa = 8.98PEE140 pKa = 3.98QGYY143 pKa = 10.47AGPGGQWQGQGYY155 pKa = 9.15EE156 pKa = 3.95NQGYY160 pKa = 8.42QEE162 pKa = 4.05QPEE165 pKa = 4.36EE166 pKa = 4.22KK167 pKa = 10.49SNGRR171 pKa = 11.84NILIIVLLVLALLAAVAFAVFWFTGKK197 pKa = 9.7PGEE200 pKa = 4.61GKK202 pKa = 10.34SSEE205 pKa = 4.1QTTVSSSEE213 pKa = 3.84ATDD216 pKa = 3.3ARR218 pKa = 11.84GTEE221 pKa = 4.63DD222 pKa = 4.22EE223 pKa = 5.12DD224 pKa = 5.98ADD226 pKa = 3.94AQGDD230 pKa = 4.7DD231 pKa = 4.03RR232 pKa = 11.84DD233 pKa = 3.63EE234 pKa = 4.45DD235 pKa = 4.12ANRR238 pKa = 11.84EE239 pKa = 4.02DD240 pKa = 5.32DD241 pKa = 5.94DD242 pKa = 5.3EE243 pKa = 4.58DD244 pKa = 3.84TGDD247 pKa = 3.75EE248 pKa = 4.35AEE250 pKa = 4.75SRR252 pKa = 11.84PKK254 pKa = 10.63NPRR257 pKa = 11.84LPGYY261 pKa = 7.35ATPVNSSARR270 pKa = 11.84GSNPGGDD277 pKa = 4.21LNSVWKK283 pKa = 10.55SGPTSDD289 pKa = 4.78SFALAVRR296 pKa = 11.84DD297 pKa = 4.26AYY299 pKa = 11.33VDD301 pKa = 3.68AYY303 pKa = 11.42LDD305 pKa = 3.81GDD307 pKa = 3.58EE308 pKa = 6.08DD309 pKa = 4.01EE310 pKa = 5.07FNHH313 pKa = 5.83VVEE316 pKa = 5.43AYY318 pKa = 10.8SDD320 pKa = 3.79VTGTSYY326 pKa = 11.02TMSCRR331 pKa = 11.84DD332 pKa = 3.09NGEE335 pKa = 4.29YY336 pKa = 9.8VHH338 pKa = 6.46CTGGNDD344 pKa = 3.39ANVYY348 pKa = 9.43IAA350 pKa = 5.1

Molecular weight: 36.78 kDa
Isoelectric point according different methods:





Protein with the highest isoelectric point:
>tr|B1VEK0|B1VEK0_CORU7 Delta-aminolevulinic acid dehydratase OS=Corynebacterium urealyticum (strain ATCC 43042 / DSM 7109) OX=504474 GN=cu0229 PE=3 SV=1
MM1 pKa = 7.4GSVIKK6 pKa = 10.38KK7 pKa = 8.42RR8 pKa = 11.84RR9 pKa = 11.84KK10 pKa = 9.06RR11 pKa = 11.84MSKK14 pKa = 9.63KK15 pKa = 9.56KK16 pKa = 9.27HH17 pKa = 5.36RR18 pKa = 11.84KK19 pKa = 5.5MLKK22 pKa = 7.41RR23 pKa = 11.84TRR25 pKa = 11.84VQRR28 pKa = 11.84RR29 pKa = 11.84KK30 pKa = 10.11LGKK33 pKa = 9.87

Molecular weight: 4.14 kDa
Isoelectric point according different methods:





Peptides (in silico digests for buttom-up proteomics)

Below you can find in silico digests of the whole proteome with Trypsin, Chymotrypsin, Trypsin+LysC, LysN, ArgC proteases suitable for different mass spec machines.

Try
ESI
ChTry
ESI
ArgC
ESI
LysN
ESI
TryLysC
ESI

Try
MALDI
ChTry
MALDI
ArgC
MALDI
LysN
MALDI
TryLysC
MALDI

Try
LTQ
ChTry
LTQ
ArgC
LTQ
LysN
LTQ
TryLysC
LTQ

Try
MSlow
ChTry
MSlow
ArgC
MSlow
LysN
MSlow
TryLysC
MSlow

Try
MShigh
ChTry
MShigh
ArgC
MShigh
LysN
MShigh
TryLysC
MShigh

General Statistics

Number of major isoforms

Number of additional isoforms

Number of all proteins

Number of amino acids

Min. Seq. Length

Max. Seq. Length

Avg. Seq. Length

Avg. Mol. Weight

2011

0

2011

702396

15

3618

349.3

37.76

Amino acid frequency

Ala

Cys

Asp

Glu

Phe

Gly

His

Ile

Lys

Leu

11.974 ± 0.077

0.662 ± 0.015

5.854 ± 0.046

6.654 ± 0.056

3.123 ± 0.03

8.76 ± 0.05

2.1 ± 0.023

4.687 ± 0.037

3.461 ± 0.048

9.386 ± 0.053

Met

Asn

Gln

Pro

Arg

Ser

Thr

Val

Trp

Tyr

2.184 ± 0.025

2.871 ± 0.033

5.245 ± 0.045

3.618 ± 0.03

6.458 ± 0.05

5.743 ± 0.039

5.848 ± 0.038

7.873 ± 0.048

1.404 ± 0.022

2.094 ± 0.027
Note: For amino acid frequency statistics the error has been estimated with the bootstraping (x100) at the protein level

Most of the basic statistics you can see at this page can be downloaded from this CSV file

For dipeptide frequency statistics click here
See this proteome in: uniprot_link
Proteome-pI is available under Creative Commons Attribution-NoDerivs license, for more details see here

Reference: Kozlowski LP. Proteome-pI 2.0: Proteome Isoelectric Point Database Update. Nucleic Acids Res. 2021, doi: 10.1093/nar/gkab944 Contact: Lukasz P. Kozlowski