Antrodiella citrinella

Taxonomy: cellular organisms; Eukaryota; Opisthokonta; Fungi; Dikarya; Basidiomycota; Agaricomycotina; Agaricomycetes; Agaricomycetes incertae sedis; Polyporales; Steccherinaceae; Antrodiella

Average proteome isoelectric point is 6.23

Get precalculated fractions of proteins

Acidic
pI < 6.8
6.8-7.4
pI > 7.4
Basic
    
All



Virtual 2D-PAGE plot for 9798 proteins (isoelectric point calculated using IPC2_protein)

Get csv file with sequences according to given criteria:
        -     Method 

     -  kDa    
                                                                                      

* You can choose from 21 different methods for calculating isoelectric point

Summary statistics related to proteome-wise predictions


    
Protein with the lowest isoelectric point:
>tr|A0A4S4MPP3|A0A4S4MPP3_9APHY HIG1 domain-containing protein OS=Antrodiella citrinella OX=2447956 GN=EUX98_g6970 PE=4 SV=1
MM1 pKa = 7.21PTASTDD7 pKa = 3.82FTLEE11 pKa = 4.06LPAMDD16 pKa = 5.15SDD18 pKa = 6.14LMPEE22 pKa = 3.96WLYY25 pKa = 11.24EE26 pKa = 4.19PGPEE30 pKa = 4.86IPLTQDD36 pKa = 3.0DD37 pKa = 3.83VRR39 pKa = 11.84RR40 pKa = 11.84LYY42 pKa = 11.02RR43 pKa = 11.84NSTCTTTEE51 pKa = 3.96DD52 pKa = 4.2SLSLGYY58 pKa = 10.79GSIRR62 pKa = 11.84APSPAEE68 pKa = 3.95LQSLWDD74 pKa = 4.28DD75 pKa = 4.07SEE77 pKa = 5.05SDD79 pKa = 3.57SGSDD83 pKa = 4.96DD84 pKa = 4.0EE85 pKa = 5.8PFDD88 pKa = 6.36DD89 pKa = 5.99EE90 pKa = 7.33DD91 pKa = 5.94DD92 pKa = 4.75DD93 pKa = 5.71EE94 pKa = 4.62NLCVSDD100 pKa = 5.23ADD102 pKa = 4.02TDD104 pKa = 4.06STSATLHH111 pKa = 6.54DD112 pKa = 5.01APVDD116 pKa = 4.02PADD119 pKa = 4.27HH120 pKa = 6.7APSTSALKK128 pKa = 10.22QPQLISPPSPPSPRR142 pKa = 11.84RR143 pKa = 11.84HH144 pKa = 6.36PDD146 pKa = 3.14DD147 pKa = 4.29LLRR150 pKa = 11.84LYY152 pKa = 10.04AYY154 pKa = 10.7SSADD158 pKa = 3.48PDD160 pKa = 4.66LATCLHH166 pKa = 6.9GIDD169 pKa = 4.78EE170 pKa = 5.14ALLCNPFSVYY180 pKa = 11.26ADD182 pKa = 3.36VCYY185 pKa = 10.48NAAVKK190 pKa = 10.47RR191 pKa = 11.84EE192 pKa = 4.01PQNGGVSRR200 pKa = 11.84GSNEE204 pKa = 3.79LEE206 pKa = 3.7RR207 pKa = 11.84VTEE210 pKa = 3.87EE211 pKa = 5.06DD212 pKa = 3.21EE213 pKa = 4.39TEE215 pKa = 3.96EE216 pKa = 4.45AEE218 pKa = 4.37SEE220 pKa = 4.14EE221 pKa = 5.28SEE223 pKa = 5.71DD224 pKa = 3.29EE225 pKa = 4.33DD226 pKa = 4.75EE227 pKa = 5.03PVLHH231 pKa = 6.97SPIQTGVVASNWTSGVYY248 pKa = 9.82VGNAPSEE255 pKa = 4.18ALSALALPAPYY266 pKa = 9.64HH267 pKa = 5.81ATMDD271 pKa = 3.88SKK273 pKa = 10.87PGCFVSPVSTNN284 pKa = 2.84

Molecular weight: 30.62 kDa
Isoelectric point according different methods:





Protein with the highest isoelectric point:
>tr|A0A4S4MVL2|A0A4S4MVL2_9APHY Signal recognition particle receptor subunit beta OS=Antrodiella citrinella OX=2447956 GN=EUX98_g3829 PE=3 SV=1
MM1 pKa = 6.8THH3 pKa = 6.6DD4 pKa = 5.65AIWFSRR10 pKa = 11.84PRR12 pKa = 11.84KK13 pKa = 7.98YY14 pKa = 11.02GKK16 pKa = 10.34GSRR19 pKa = 11.84QCRR22 pKa = 11.84LCAHH26 pKa = 5.84QAGLIRR32 pKa = 11.84KK33 pKa = 9.09YY34 pKa = 10.91GIDD37 pKa = 3.51LCRR40 pKa = 11.84QCFRR44 pKa = 11.84EE45 pKa = 4.02KK46 pKa = 10.43SAAIGFTKK54 pKa = 10.0TRR56 pKa = 3.53

Molecular weight: 6.52 kDa
Isoelectric point according different methods:





Peptides (in silico digests for buttom-up proteomics)

Below you can find in silico digests of the whole proteome with Trypsin, Chymotrypsin, Trypsin+LysC, LysN, ArgC proteases suitable for different mass spec machines.

Try
ESI
ChTry
ESI
ArgC
ESI
LysN
ESI
TryLysC
ESI

Try
MALDI
ChTry
MALDI
ArgC
MALDI
LysN
MALDI
TryLysC
MALDI

Try
LTQ
ChTry
LTQ
ArgC
LTQ
LysN
LTQ
TryLysC
LTQ

Try
MSlow
ChTry
MSlow
ArgC
MSlow
LysN
MSlow
TryLysC
MSlow

Try
MShigh
ChTry
MShigh
ArgC
MShigh
LysN
MShigh
TryLysC
MShigh

General Statistics

Number of major isoforms

Number of additional isoforms

Number of all proteins

Number of amino acids

Min. Seq. Length

Max. Seq. Length

Avg. Seq. Length

Avg. Mol. Weight

9798

0

9798

4715391

28

4919

481.3

53.14

Amino acid frequency

Ala

Cys

Asp

Glu

Phe

Gly

His

Ile

Lys

Leu

8.829 ± 0.02

1.08 ± 0.008

6.015 ± 0.019

6.098 ± 0.024

3.703 ± 0.015

6.339 ± 0.02

2.536 ± 0.011

4.761 ± 0.017

4.703 ± 0.021

9.026 ± 0.027

Met

Asn

Gln

Pro

Arg

Ser

Thr

Val

Trp

Tyr

2.155 ± 0.008

3.378 ± 0.014

6.413 ± 0.028

3.75 ± 0.016

5.972 ± 0.021

8.341 ± 0.029

6.118 ± 0.015

6.671 ± 0.019

1.373 ± 0.007

2.678 ± 0.011
Note: For amino acid frequency statistics the error has been estimated with the bootstraping (x100) at the protein level

Most of the basic statistics you can see at this page can be downloaded from this CSV file

For dipeptide frequency statistics click here
See this proteome in: uniprot_link
Proteome-pI is available under Creative Commons Attribution-NoDerivs license, for more details see here

Reference: Kozlowski LP. Proteome-pI 2.0: Proteome Isoelectric Point Database Update. Nucleic Acids Res. 2021, doi: 10.1093/nar/gkab944 Contact: Lukasz P. Kozlowski