Gordonia phage RedWattleHog

Taxonomy: Viruses; Duplodnaviria; Heunggongvirae; Uroviricota; Caudoviricetes; Caudovirales; Myoviridae; unclassified Myoviridae

Average proteome isoelectric point is 5.75

Get precalculated fractions of proteins

Acidic
pI < 6.8
6.8-7.4
pI > 7.4
Basic
    
All



Virtual 2D-PAGE plot for 212 proteins (isoelectric point calculated using IPC2_protein)

Get csv file with sequences according to given criteria:
        -     Method 

     -  kDa    
                                                                                      

* You can choose from 21 different methods for calculating isoelectric point

Summary statistics related to proteome-wise predictions


    
Protein with the lowest isoelectric point:
>tr|A0A7D5FSD4|A0A7D5FSD4_9CAUD Uncharacterized protein OS=Gordonia phage RedWattleHog OX=2743988 GN=201 PE=4 SV=1
MM1 pKa = 7.41TSYY4 pKa = 11.26LKK6 pKa = 10.85LSEE9 pKa = 4.23RR10 pKa = 11.84PGLSFTAPEE19 pKa = 4.29CNACLKK25 pKa = 10.59EE26 pKa = 3.88VDD28 pKa = 3.94HH29 pKa = 7.56DD30 pKa = 4.58GDD32 pKa = 3.43GWLCPSCGTSWPGNVMEE49 pKa = 5.28SDD51 pKa = 3.62GSDD54 pKa = 2.95AQLFEE59 pKa = 4.42EE60 pKa = 4.86WSGEE64 pKa = 4.02EE65 pKa = 5.08LPGPTCKK72 pKa = 9.66TDD74 pKa = 3.29EE75 pKa = 4.93AYY77 pKa = 10.67LAAISPSDD85 pKa = 2.73WWKK88 pKa = 9.85RR89 pKa = 11.84WPSCVYY95 pKa = 10.1NQSDD99 pKa = 5.1DD100 pKa = 5.15DD101 pKa = 4.69HH102 pKa = 7.14DD103 pKa = 3.9QQKK106 pKa = 11.07DD107 pKa = 3.68GNGG110 pKa = 3.23

Molecular weight: 12.18 kDa
Isoelectric point according different methods:





Protein with the highest isoelectric point:
>tr|A0A7D5JHW0|A0A7D5JHW0_9CAUD Minor tail protein OS=Gordonia phage RedWattleHog OX=2743988 GN=47 PE=4 SV=1
MM1 pKa = 7.45KK2 pKa = 10.01RR3 pKa = 11.84QRR5 pKa = 11.84GQAIKK10 pKa = 10.31PGTSSNGYY18 pKa = 8.98QLAILNGKK26 pKa = 9.05ARR28 pKa = 11.84LIHH31 pKa = 6.05HH32 pKa = 7.12LVMEE36 pKa = 4.77AFVGPRR42 pKa = 11.84PDD44 pKa = 3.72GADD47 pKa = 2.89IRR49 pKa = 11.84HH50 pKa = 5.94WPDD53 pKa = 2.77TSKK56 pKa = 11.58SNNTLSNLSYY66 pKa = 9.48GTRR69 pKa = 11.84RR70 pKa = 11.84QNIMDD75 pKa = 4.35AVAAGTWNNRR85 pKa = 11.84NTGKK89 pKa = 7.27THH91 pKa = 7.36CDD93 pKa = 3.0RR94 pKa = 11.84GHH96 pKa = 6.6EE97 pKa = 4.06FTPEE101 pKa = 3.47NTYY104 pKa = 10.46VWTGRR109 pKa = 11.84TGRR112 pKa = 11.84EE113 pKa = 3.42EE114 pKa = 4.12RR115 pKa = 11.84QCRR118 pKa = 11.84ACNRR122 pKa = 11.84MRR124 pKa = 11.84RR125 pKa = 11.84QGQLL129 pKa = 2.91

Molecular weight: 14.65 kDa
Isoelectric point according different methods:





Peptides (in silico digests for buttom-up proteomics)

Below you can find in silico digests of the whole proteome with Trypsin, Chymotrypsin, Trypsin+LysC, LysN, ArgC proteases suitable for different mass spec machines.

Try
ESI
ChTry
ESI
ArgC
ESI
LysN
ESI
TryLysC
ESI

Try
MALDI
ChTry
MALDI
ArgC
MALDI
LysN
MALDI
TryLysC
MALDI

Try
LTQ
ChTry
LTQ
ArgC
LTQ
LysN
LTQ
TryLysC
LTQ

Try
MSlow
ChTry
MSlow
ArgC
MSlow
LysN
MSlow
TryLysC
MSlow

Try
MShigh
ChTry
MShigh
ArgC
MShigh
LysN
MShigh
TryLysC
MShigh

General Statistics

Number of major isoforms

Number of additional isoforms

Number of all proteins

Number of amino acids

Min. Seq. Length

Max. Seq. Length

Avg. Seq. Length

Avg. Mol. Weight

212

0

212

43022

30

1149

202.9

22.43

Amino acid frequency

Ala

Cys

Asp

Glu

Phe

Gly

His

Ile

Lys

Leu

9.565 ± 0.248

0.99 ± 0.081

7.073 ± 0.214

6.794 ± 0.278

2.864 ± 0.126

7.935 ± 0.221

2.155 ± 0.118

4.209 ± 0.122

3.728 ± 0.169

7.522 ± 0.17

Met

Asn

Gln

Pro

Arg

Ser

Thr

Val

Trp

Tyr

2.464 ± 0.113

3.428 ± 0.143

5.569 ± 0.163

3.768 ± 0.113

6.81 ± 0.201

6.313 ± 0.184

6.35 ± 0.32

7.399 ± 0.175

1.82 ± 0.108

3.243 ± 0.137
Note: For amino acid frequency statistics the error has been estimated with the bootstraping (x100) at the protein level

Most of the basic statistics you can see at this page can be downloaded from this CSV file

For dipeptide frequency statistics click here
See this proteome in: uniprot_link
Proteome-pI is available under Creative Commons Attribution-NoDerivs license, for more details see here

Reference: Kozlowski LP. Proteome-pI 2.0: Proteome Isoelectric Point Database Update. Nucleic Acids Res. 2021, doi: 10.1093/nar/gkab944 Contact: Lukasz P. Kozlowski