Desulfovibrio bizertensis DSM 18034

Taxonomy: cellular organisms; Bacteria; Proteobacteria; delta/epsilon subdivisions; Deltaproteobacteria; Desulfovibrionales; Desulfovibrionaceae; Desulfovibrio; Desulfovibrio bizertensis

Average proteome isoelectric point is 6.51

Get precalculated fractions of proteins

Acidic
pI < 6.8
6.8-7.4
pI > 7.4
Basic
    
All



Virtual 2D-PAGE plot for 2903 proteins (isoelectric point calculated using IPC2_protein)

Get csv file with sequences according to given criteria:
        -     Method 

     -  kDa    
                                                                                      

* You can choose from 21 different methods for calculating isoelectric point

Summary statistics related to proteome-wise predictions


    
Protein with the lowest isoelectric point:
>tr|A0A1T4VVU7|A0A1T4VVU7_9DELT Choloylglycine hydrolase OS=Desulfovibrio bizertensis DSM 18034 OX=1121442 GN=SAMN02745702_01034 PE=3 SV=1
MM1 pKa = 8.09VSITQAARR9 pKa = 11.84EE10 pKa = 3.97EE11 pKa = 4.17LVKK14 pKa = 10.69FFEE17 pKa = 5.44DD18 pKa = 3.79KK19 pKa = 10.65DD20 pKa = 3.75VSPIRR25 pKa = 11.84IYY27 pKa = 10.54LAPGGCSGPRR37 pKa = 11.84LSLALDD43 pKa = 3.64KK44 pKa = 11.47ANEE47 pKa = 4.16SDD49 pKa = 4.89DD50 pKa = 5.16SFDD53 pKa = 5.17LGDD56 pKa = 3.69NLTFVVDD63 pKa = 4.39KK64 pKa = 10.66NLCAKK69 pKa = 8.9AQPITIDD76 pKa = 3.02MSYY79 pKa = 11.04AGFVLEE85 pKa = 5.25SSLDD89 pKa = 3.6LGNEE93 pKa = 4.34GGCGGGCGGCGSSSSCCGSS112 pKa = 3.03

Molecular weight: 11.55 kDa
Isoelectric point according different methods:





Protein with the highest isoelectric point:
>tr|A0A1T4VQW4|A0A1T4VQW4_9DELT Permease of the drug/metabolite transporter (DMT) superfamily OS=Desulfovibrio bizertensis DSM 18034 OX=1121442 GN=SAMN02745702_00796 PE=4 SV=1
MM1 pKa = 7.32RR2 pKa = 11.84HH3 pKa = 6.13ALRR6 pKa = 11.84FACHH10 pKa = 6.31GATVSTSAVAPFSFSLFFPTPTPLYY35 pKa = 10.08IIRR38 pKa = 11.84QQQHH42 pKa = 5.13AKK44 pKa = 9.67KK45 pKa = 8.27STRR48 pKa = 11.84ISRR51 pKa = 11.84TQIMRR56 pKa = 11.84QNCRR60 pKa = 11.84SGMRR64 pKa = 11.84QFFHH68 pKa = 7.33AGQKK72 pKa = 10.13CRR74 pKa = 11.84TCISPNSNAFEE85 pKa = 4.33EE86 pKa = 4.34YY87 pKa = 10.86LPLFSVKK94 pKa = 8.6YY95 pKa = 8.28TAFFLLRR102 pKa = 11.84FTFRR106 pKa = 11.84IRR108 pKa = 11.84NDD110 pKa = 3.82RR111 pKa = 11.84IVAALEE117 pKa = 4.03SPQRR121 pKa = 11.84DD122 pKa = 3.75ATNLSYY128 pKa = 11.01SKK130 pKa = 10.87KK131 pKa = 9.87PVNTGDD137 pKa = 3.63FLDD140 pKa = 4.08IQSFPATFLSPPQSSLSRR158 pKa = 11.84RR159 pKa = 11.84DD160 pKa = 2.97IKK162 pKa = 9.09TTGKK166 pKa = 10.29ARR168 pKa = 11.84YY169 pKa = 9.06CSIFKK174 pKa = 10.83VGTTDD179 pKa = 2.9ARR181 pKa = 11.84YY182 pKa = 8.97SAIPKK187 pKa = 9.62RR188 pKa = 11.84YY189 pKa = 8.09YY190 pKa = 10.22SCPPVLQRR198 pKa = 11.84YY199 pKa = 8.68ISSTAGLPRR208 pKa = 11.84FAFVHH213 pKa = 5.51YY214 pKa = 10.57LLTLHH219 pKa = 6.25LQGRR223 pKa = 11.84RR224 pKa = 11.84DD225 pKa = 3.71QMHH228 pKa = 5.72SQCLLSRR235 pKa = 11.84YY236 pKa = 8.84CKK238 pKa = 9.37WSLGKK243 pKa = 8.97GTPSAALKK251 pKa = 10.32RR252 pKa = 11.84YY253 pKa = 9.58GGEE256 pKa = 4.16CTSHH260 pKa = 6.23IFSRR264 pKa = 11.84PSCFGCTQLRR274 pKa = 11.84KK275 pKa = 9.8LLLEE279 pKa = 3.83LHH281 pKa = 6.7PWW283 pKa = 3.36

Molecular weight: 32.37 kDa
Isoelectric point according different methods:





Peptides (in silico digests for buttom-up proteomics)

Below you can find in silico digests of the whole proteome with Trypsin, Chymotrypsin, Trypsin+LysC, LysN, ArgC proteases suitable for different mass spec machines.

Try
ESI
ChTry
ESI
ArgC
ESI
LysN
ESI
TryLysC
ESI

Try
MALDI
ChTry
MALDI
ArgC
MALDI
LysN
MALDI
TryLysC
MALDI

Try
LTQ
ChTry
LTQ
ArgC
LTQ
LysN
LTQ
TryLysC
LTQ

Try
MSlow
ChTry
MSlow
ArgC
MSlow
LysN
MSlow
TryLysC
MSlow

Try
MShigh
ChTry
MShigh
ArgC
MShigh
LysN
MShigh
TryLysC
MShigh

General Statistics

Number of major isoforms

Number of additional isoforms

Number of all proteins

Number of amino acids

Min. Seq. Length

Max. Seq. Length

Avg. Seq. Length

Avg. Mol. Weight

2903

0

2903

952713

18

4346

328.2

36.36

Amino acid frequency

Ala

Cys

Asp

Glu

Phe

Gly

His

Ile

Lys

Leu

9.095 ± 0.049

1.487 ± 0.025

5.238 ± 0.042

6.73 ± 0.05

4.338 ± 0.033

7.545 ± 0.039

2.277 ± 0.021

5.541 ± 0.043

5.089 ± 0.049

10.618 ± 0.055

Met

Asn

Gln

Pro

Arg

Ser

Thr

Val

Trp

Tyr

2.73 ± 0.024

3.141 ± 0.032

4.615 ± 0.033

3.652 ± 0.031

5.809 ± 0.05

6.239 ± 0.038

5.041 ± 0.05

6.95 ± 0.041

1.194 ± 0.018

2.67 ± 0.026
Note: For amino acid frequency statistics the error has been estimated with the bootstraping (x100) at the protein level

Most of the basic statistics you can see at this page can be downloaded from this CSV file

For dipeptide frequency statistics click here
See this proteome in: uniprot_link
Proteome-pI is available under Creative Commons Attribution-NoDerivs license, for more details see here

Reference: Kozlowski LP. Proteome-pI 2.0: Proteome Isoelectric Point Database Update. Nucleic Acids Res. 2021, doi: 10.1093/nar/gkab944 Contact: Lukasz P. Kozlowski