Podoviridae sp. ctrTa16

Taxonomy: Viruses; Duplodnaviria; Heunggongvirae; Uroviricota; Caudoviricetes; Caudovirales; Podoviridae; unclassified Podoviridae; crAss-like viruses

Average proteome isoelectric point is 6.49

Get precalculated fractions of proteins

Acidic
pI < 6.8
6.8-7.4
pI > 7.4
Basic
    
All



Virtual 2D-PAGE plot for 70 proteins (isoelectric point calculated using IPC2_protein)

Get csv file with sequences according to given criteria:
        -     Method 

     -  kDa    
                                                                                      

* You can choose from 21 different methods for calculating isoelectric point

Summary statistics related to proteome-wise predictions


    
Protein with the lowest isoelectric point:
>tr|A0A5Q2W6T6|A0A5Q2W6T6_9CAUD Uncharacterized protein OS=Podoviridae sp. ctrTa16 OX=2656715 PE=4 SV=1
MM1 pKa = 7.36ATSQTYY7 pKa = 9.13YY8 pKa = 11.29LNGASLGSSTSIFINPEE25 pKa = 3.86LTILGADD32 pKa = 4.03GFYY35 pKa = 10.66SDD37 pKa = 4.1GVIVRR42 pKa = 11.84EE43 pKa = 3.9QSGGILLPQQPCPSCATQCGEE64 pKa = 4.41SVITSFDD71 pKa = 3.9SNGVYY76 pKa = 9.46MLPIDD81 pKa = 4.23AGSSVGAIIIRR92 pKa = 11.84FNPFSIPIGIQAVFNSITYY111 pKa = 9.7NKK113 pKa = 9.69LVSATYY119 pKa = 10.23GVLEE123 pKa = 4.44GSPGLLTYY131 pKa = 10.55VGNTANDD138 pKa = 3.88CGLVAGSPHH147 pKa = 6.17TLDD150 pKa = 4.99DD151 pKa = 4.1FVFNGTSFVPQATQSIVSITAPEE174 pKa = 4.12VQTTVASPGEE184 pKa = 4.27CVMIIPKK191 pKa = 8.18TTASPSAVDD200 pKa = 3.33VTIAAACASAVFNVKK215 pKa = 9.82IEE217 pKa = 4.25CPAFLSSFEE226 pKa = 3.95ISEE229 pKa = 4.55ANVDD233 pKa = 3.78APAACLSSVSTDD245 pKa = 2.88AYY247 pKa = 10.34VAFINGSGTVFGLYY261 pKa = 10.5DD262 pKa = 4.99CIFSDD267 pKa = 3.81ATGEE271 pKa = 4.09FPLPDD276 pKa = 3.99GYY278 pKa = 11.76YY279 pKa = 8.08KK280 pKa = 10.75TNLISVPPGYY290 pKa = 11.09DD291 pKa = 2.53WMRR294 pKa = 11.84LQNGVIIEE302 pKa = 4.49FGNCPP307 pKa = 3.36

Molecular weight: 31.95 kDa
Isoelectric point according different methods:





Protein with the highest isoelectric point:
>tr|A0A5Q2W8T6|A0A5Q2W8T6_9CAUD Structural protein OS=Podoviridae sp. ctrTa16 OX=2656715 PE=4 SV=1
MM1 pKa = 7.75ADD3 pKa = 3.37KK4 pKa = 11.25SKK6 pKa = 10.16MKK8 pKa = 10.31CNRR11 pKa = 11.84PVPSDD16 pKa = 3.48RR17 pKa = 11.84PGKK20 pKa = 10.7KK21 pKa = 9.6MMVKK25 pKa = 9.51ACSGGVEE32 pKa = 4.13KK33 pKa = 10.67LLHH36 pKa = 6.54FGAEE40 pKa = 4.91GYY42 pKa = 9.1GHH44 pKa = 6.93NYY46 pKa = 8.7SAAARR51 pKa = 11.84KK52 pKa = 9.48SFRR55 pKa = 11.84ARR57 pKa = 11.84HH58 pKa = 5.08GCEE61 pKa = 3.42SATNKK66 pKa = 7.79LTPKK70 pKa = 9.85HH71 pKa = 5.48WACSYY76 pKa = 10.55LWAGKK81 pKa = 10.33GGSTKK86 pKa = 10.71SNPKK90 pKa = 9.06NRR92 pKa = 11.84KK93 pKa = 8.47GKK95 pKa = 9.62YY96 pKa = 8.81

Molecular weight: 10.53 kDa
Isoelectric point according different methods:





Peptides (in silico digests for buttom-up proteomics)

Below you can find in silico digests of the whole proteome with Trypsin, Chymotrypsin, Trypsin+LysC, LysN, ArgC proteases suitable for different mass spec machines.

Try
ESI
ChTry
ESI
ArgC
ESI
LysN
ESI
TryLysC
ESI

Try
MALDI
ChTry
MALDI
ArgC
MALDI
LysN
MALDI
TryLysC
MALDI

Try
LTQ
ChTry
LTQ
ArgC
LTQ
LysN
LTQ
TryLysC
LTQ

Try
MSlow
ChTry
MSlow
ArgC
MSlow
LysN
MSlow
TryLysC
MSlow

Try
MShigh
ChTry
MShigh
ArgC
MShigh
LysN
MShigh
TryLysC
MShigh

General Statistics

Number of major isoforms

Number of additional isoforms

Number of all proteins

Number of amino acids

Min. Seq. Length

Max. Seq. Length

Avg. Seq. Length

Avg. Mol. Weight

70

0

70

18610

34

2943

265.9

30.02

Amino acid frequency

Ala

Cys

Asp

Glu

Phe

Gly

His

Ile

Lys

Leu

6.814 ± 0.377

0.951 ± 0.206

5.986 ± 0.143

7.474 ± 0.442

4.546 ± 0.175

6.373 ± 0.284

1.3 ± 0.173

7.093 ± 0.192

7.942 ± 0.54

7.41 ± 0.209

Met

Asn

Gln

Pro

Arg

Ser

Thr

Val

Trp

Tyr

2.676 ± 0.162

5.97 ± 0.188

3.385 ± 0.199

3.321 ± 0.204

4.39 ± 0.213

7.227 ± 0.265

5.61 ± 0.339

6.179 ± 0.281

0.973 ± 0.105

4.379 ± 0.232
Note: For amino acid frequency statistics the error has been estimated with the bootstraping (x100) at the protein level

Most of the basic statistics you can see at this page can be downloaded from this CSV file

For dipeptide frequency statistics click here
See this proteome in: uniprot_link
Proteome-pI is available under Creative Commons Attribution-NoDerivs license, for more details see here

Reference: Kozlowski LP. Proteome-pI 2.0: Proteome Isoelectric Point Database Update. Nucleic Acids Res. 2021, doi: 10.1093/nar/gkab944 Contact: Lukasz P. Kozlowski