Apis mellifera associated microvirus 55

Taxonomy: Viruses; Monodnaviria; Sangervirae; Phixviricota; Malgrandaviricetes; Petitvirales; Microviridae; unclassified Microviridae

Average proteome isoelectric point is 6.28

Get precalculated fractions of proteins

Acidic
pI < 6.8
6.8-7.4
pI > 7.4
Basic
    
All



Virtual 2D-PAGE plot for 5 proteins (isoelectric point calculated using IPC2_protein)

Get csv file with sequences according to given criteria:
        -     Method 

     -  kDa    
                                                                                      

* You can choose from 21 different methods for calculating isoelectric point

Summary statistics related to proteome-wise predictions


    
Protein with the lowest isoelectric point:
>tr|A0A3S8UTM4|A0A3S8UTM4_9VIRU DNA pilot protein OS=Apis mellifera associated microvirus 55 OX=2494786 PE=4 SV=1
MM1 pKa = 7.14LHH3 pKa = 6.84CRR5 pKa = 11.84TINYY9 pKa = 9.44SCTGKK14 pKa = 9.75NRR16 pKa = 11.84QYY18 pKa = 11.78KK19 pKa = 8.81MKK21 pKa = 10.61QSGNTYY27 pKa = 10.35YY28 pKa = 10.15LTDD31 pKa = 3.97EE32 pKa = 5.17PDD34 pKa = 3.41PHH36 pKa = 7.59DD37 pKa = 3.91MPSYY41 pKa = 11.01EE42 pKa = 4.37DD43 pKa = 3.65TLLQYY48 pKa = 10.78ADD50 pKa = 3.9PMFASGFVDD59 pKa = 4.51PSSLLASSAHH69 pKa = 6.21AEE71 pKa = 4.19SAAEE75 pKa = 4.26AIIHH79 pKa = 5.6SVEE82 pKa = 3.91SSNNIEE88 pKa = 4.1NEE90 pKa = 3.69II91 pKa = 4.01

Molecular weight: 10.15 kDa
Isoelectric point according different methods:





Protein with the highest isoelectric point:
>tr|A0A3S8UTN5|A0A3S8UTN5_9VIRU Uncharacterized protein OS=Apis mellifera associated microvirus 55 OX=2494786 PE=4 SV=1
MM1 pKa = 7.72CSMLHH6 pKa = 6.05YY7 pKa = 9.02LTHH10 pKa = 6.18PQSNAVVHH18 pKa = 6.28CPLYY22 pKa = 9.97TGVLRR27 pKa = 11.84GLPLRR32 pKa = 11.84QLVLSSRR39 pKa = 11.84TVVSCQWIKK48 pKa = 11.08RR49 pKa = 11.84DD50 pKa = 3.25VLYY53 pKa = 10.97NFRR56 pKa = 11.84ACVPHH61 pKa = 6.29ACAYY65 pKa = 9.66ILL67 pKa = 4.27

Molecular weight: 7.64 kDa
Isoelectric point according different methods:





Peptides (in silico digests for buttom-up proteomics)

Below you can find in silico digests of the whole proteome with Trypsin, Chymotrypsin, Trypsin+LysC, LysN, ArgC proteases suitable for different mass spec machines.

Try
ESI
ChTry
ESI
ArgC
ESI
LysN
ESI
TryLysC
ESI

Try
MALDI
ChTry
MALDI
ArgC
MALDI
LysN
MALDI
TryLysC
MALDI

Try
LTQ
ChTry
LTQ
ArgC
LTQ
LysN
LTQ
TryLysC
LTQ

Try
MSlow
ChTry
MSlow
ArgC
MSlow
LysN
MSlow
TryLysC
MSlow

Try
MShigh
ChTry
MShigh
ArgC
MShigh
LysN
MShigh
TryLysC
MShigh

General Statistics

Number of major isoforms

Number of additional isoforms

Number of all proteins

Number of amino acids

Min. Seq. Length

Max. Seq. Length

Avg. Seq. Length

Avg. Mol. Weight

5

0

5

1753

67

682

350.6

39.78

Amino acid frequency

Ala

Cys

Asp

Glu

Phe

Gly

His

Ile

Lys

Leu

6.275 ± 1.219

1.711 ± 0.685

6.617 ± 0.707

4.678 ± 0.944

4.906 ± 1.141

5.705 ± 0.903

2.567 ± 0.685

6.104 ± 0.496

6.218 ± 1.225

9.241 ± 0.629

Met

Asn

Gln

Pro

Arg

Ser

Thr

Val

Trp

Tyr

2.339 ± 0.387

5.59 ± 0.667

4.278 ± 0.704

3.708 ± 0.765

4.45 ± 0.641

8.614 ± 1.299

5.02 ± 0.781

5.476 ± 0.633

1.198 ± 0.457

5.305 ± 0.966
Note: For amino acid frequency statistics the error has been estimated with the bootstraping (x100) at the protein level

Most of the basic statistics you can see at this page can be downloaded from this CSV file

For dipeptide frequency statistics click here
See this proteome in: uniprot_link
Proteome-pI is available under Creative Commons Attribution-NoDerivs license, for more details see here

Reference: Kozlowski LP. Proteome-pI 2.0: Proteome Isoelectric Point Database Update. Nucleic Acids Res. 2021, doi: 10.1093/nar/gkab944 Contact: Lukasz P. Kozlowski