Salimicrobium jeotgali

Taxonomy: cellular organisms; Bacteria; Terrabacteria group; Firmicutes; Bacilli; Bacillales; Bacillaceae; Salimicrobium

Average proteome isoelectric point is 5.97

Get precalculated fractions of proteins

Acidic
pI < 6.8
6.8-7.4
pI > 7.4
Basic
    
All



Virtual 2D-PAGE plot for 2724 proteins (isoelectric point calculated using IPC2_protein)

Get csv file with sequences according to given criteria:
        -     Method 

     -  kDa    
                                                                                      

* You can choose from 21 different methods for calculating isoelectric point

Summary statistics related to proteome-wise predictions


    
Protein with the lowest isoelectric point:
>tr|K2G8T7|K2G8T7_9BACI Serine-type D-Ala-D-Ala carboxypeptidase OS=Salimicrobium jeotgali OX=1230341 GN=MJ3_07103 PE=3 SV=1
MM1 pKa = 7.62LSNGRR6 pKa = 11.84YY7 pKa = 8.59FWDD10 pKa = 3.62EE11 pKa = 3.74AKK13 pKa = 11.02VPGVEE18 pKa = 5.28SDD20 pKa = 3.66TLDD23 pKa = 3.78EE24 pKa = 4.31GHH26 pKa = 7.0VIADD30 pKa = 3.61SLGGVSNAYY39 pKa = 10.43NITPQEE45 pKa = 4.08STLNRR50 pKa = 11.84HH51 pKa = 5.59GDD53 pKa = 3.35QAYY56 pKa = 10.88LEE58 pKa = 4.27DD59 pKa = 5.48AIRR62 pKa = 11.84NAGGATDD69 pKa = 4.44FEE71 pKa = 5.32AIITYY76 pKa = 9.91PDD78 pKa = 3.66TEE80 pKa = 4.21TQIPSKK86 pKa = 10.49YY87 pKa = 9.55QYY89 pKa = 10.7TYY91 pKa = 9.56TIQGNEE97 pKa = 4.05VVDD100 pKa = 3.68TFDD103 pKa = 4.21NVNPDD108 pKa = 4.03DD109 pKa = 4.36VNEE112 pKa = 4.21SLGLTEE118 pKa = 6.26DD119 pKa = 4.53DD120 pKa = 5.14DD121 pKa = 5.27SSEE124 pKa = 4.21SSPSFEE130 pKa = 4.04PTTTAEE136 pKa = 4.2EE137 pKa = 4.65GDD139 pKa = 4.19VSSVDD144 pKa = 3.52ANGNGQVTIQEE155 pKa = 4.2AKK157 pKa = 10.41DD158 pKa = 3.36AGFSMPITSDD168 pKa = 2.58HH169 pKa = 6.29WLYY172 pKa = 11.17EE173 pKa = 3.93YY174 pKa = 10.43MQDD177 pKa = 3.56RR178 pKa = 11.84DD179 pKa = 3.3GDD181 pKa = 4.16GTVGEE186 pKa = 4.44

Molecular weight: 20.24 kDa
Isoelectric point according different methods:





Protein with the highest isoelectric point:
>tr|K2GM93|K2GM93_9BACI Uncharacterized protein OS=Salimicrobium jeotgali OX=1230341 GN=MJ3_07108 PE=4 SV=1
MM1 pKa = 7.44KK2 pKa = 9.6RR3 pKa = 11.84TFQPNNRR10 pKa = 11.84KK11 pKa = 9.23RR12 pKa = 11.84KK13 pKa = 8.12KK14 pKa = 8.46VHH16 pKa = 5.5GFRR19 pKa = 11.84TRR21 pKa = 11.84MSTKK25 pKa = 10.06NGRR28 pKa = 11.84KK29 pKa = 8.49VLARR33 pKa = 11.84RR34 pKa = 11.84RR35 pKa = 11.84RR36 pKa = 11.84KK37 pKa = 9.37GRR39 pKa = 11.84KK40 pKa = 6.43TLSAA44 pKa = 4.15

Molecular weight: 5.34 kDa
Isoelectric point according different methods:





Peptides (in silico digests for buttom-up proteomics)

Below you can find in silico digests of the whole proteome with Trypsin, Chymotrypsin, Trypsin+LysC, LysN, ArgC proteases suitable for different mass spec machines.

Try
ESI
ChTry
ESI
ArgC
ESI
LysN
ESI
TryLysC
ESI

Try
MALDI
ChTry
MALDI
ArgC
MALDI
LysN
MALDI
TryLysC
MALDI

Try
LTQ
ChTry
LTQ
ArgC
LTQ
LysN
LTQ
TryLysC
LTQ

Try
MSlow
ChTry
MSlow
ArgC
MSlow
LysN
MSlow
TryLysC
MSlow

Try
MShigh
ChTry
MShigh
ArgC
MShigh
LysN
MShigh
TryLysC
MShigh

General Statistics

Number of major isoforms

Number of additional isoforms

Number of all proteins

Number of amino acids

Min. Seq. Length

Max. Seq. Length

Avg. Seq. Length

Avg. Mol. Weight

2724

0

2724

787348

31

1596

289.0

32.42

Amino acid frequency

Ala

Cys

Asp

Glu

Phe

Gly

His

Ile

Lys

Leu

7.18 ± 0.049

0.571 ± 0.014

5.357 ± 0.042

8.709 ± 0.073

4.435 ± 0.046

7.328 ± 0.049

2.09 ± 0.021

6.779 ± 0.05

6.269 ± 0.049

9.316 ± 0.064

Met

Asn

Gln

Pro

Arg

Ser

Thr

Val

Trp

Tyr

2.942 ± 0.024

3.912 ± 0.031

3.69 ± 0.027

3.348 ± 0.029

4.704 ± 0.04

6.075 ± 0.042

5.538 ± 0.028

7.278 ± 0.039

1.015 ± 0.019

3.463 ± 0.03
Note: For amino acid frequency statistics the error has been estimated with the bootstraping (x100) at the protein level

Most of the basic statistics you can see at this page can be downloaded from this CSV file

For dipeptide frequency statistics click here
See this proteome in: uniprot_link
Proteome-pI is available under Creative Commons Attribution-NoDerivs license, for more details see here

Reference: Kozlowski LP. Proteome-pI 2.0: Proteome Isoelectric Point Database Update. Nucleic Acids Res. 2021, doi: 10.1093/nar/gkab944 Contact: Lukasz P. Kozlowski