Amino acid dipepetide frequency for Capybara microvirus Cap3_SP_423

Apart from single amino acid frequencies one can also calculate so called amino acid dipeptide frequency.

There is 400 possibilites (441 if we consider Xaa as additional 21st amino acid representing all non-standard or unknown amino acids). Thus, if the dipeptides would be present randomly in proteins each amino acid dipeptide should be present with 0.25% frequency. As it is not the case in the nature, for better visablity all more than expected dipepetides are marked by red, and those which are underrepresented are marked by blue in the table.

All values are presented as per milles (‰), therefore need to be multiplied by 10-3.

For more information see sequence space article on Wikipedia.

AlaCysAspGluPheGlyHisIleLysLeuMetAsnProGlnArgSerThrValTrpTyrXaa
Ala
0.0AlaAla: 0.0 ± 0.0
0.0AlaCys: 0.0 ± 0.0
2.546AlaAsp: 2.546 ± 1.306
5.729AlaGlu: 5.729 ± 5.012
4.456AlaPhe: 4.456 ± 1.942
3.183AlaGly: 3.183 ± 1.375
0.0AlaHis: 0.0 ± 0.0
4.456AlaIle: 4.456 ± 1.444
5.092AlaLys: 5.092 ± 1.536
5.092AlaLeu: 5.092 ± 1.397
0.637AlaMet: 0.637 ± 0.515
3.819AlaAsn: 3.819 ± 2.093
3.183AlaPro: 3.183 ± 1.112
1.91AlaGln: 1.91 ± 1.051
3.819AlaArg: 3.819 ± 1.487
5.092AlaSer: 5.092 ± 1.089
2.546AlaThr: 2.546 ± 1.443
2.546AlaVal: 2.546 ± 0.499
2.546AlaTrp: 2.546 ± 1.212
3.819AlaTyr: 3.819 ± 1.607
0.0AlaXaa: 0.0 ± 0.0
Cys
0.637CysAla: 0.637 ± 0.546
0.0CysCys: 0.0 ± 0.0
0.0CysAsp: 0.0 ± 0.0
1.273CysGlu: 1.273 ± 0.931
1.273CysPhe: 1.273 ± 1.03
1.273CysGly: 1.273 ± 0.397
1.273CysHis: 1.273 ± 0.397
0.637CysIle: 0.637 ± 0.546
0.0CysLys: 0.0 ± 0.0
1.91CysLeu: 1.91 ± 0.803
0.0CysMet: 0.0 ± 0.0
0.637CysAsn: 0.637 ± 0.546
0.637CysPro: 0.637 ± 0.546
0.637CysGln: 0.637 ± 0.546
0.0CysArg: 0.0 ± 0.0
0.0CysSer: 0.0 ± 0.0
0.637CysThr: 0.637 ± 0.515
0.637CysVal: 0.637 ± 0.546
0.637CysTrp: 0.637 ± 0.546
0.0CysTyr: 0.0 ± 0.0
0.0CysXaa: 0.0 ± 0.0
Asp
2.546AspAla: 2.546 ± 1.325
0.0AspCys: 0.0 ± 0.0
5.092AspAsp: 5.092 ± 1.588
5.092AspGlu: 5.092 ± 1.937
5.092AspPhe: 5.092 ± 1.474
3.183AspGly: 3.183 ± 1.71
1.273AspHis: 1.273 ± 0.397
5.729AspIle: 5.729 ± 0.839
1.91AspLys: 1.91 ± 0.741
4.456AspLeu: 4.456 ± 1.1
0.637AspMet: 0.637 ± 0.515
2.546AspAsn: 2.546 ± 0.794
1.273AspPro: 1.273 ± 1.091
2.546AspGln: 2.546 ± 1.325
2.546AspArg: 2.546 ± 0.499
5.729AspSer: 5.729 ± 1.433
2.546AspThr: 2.546 ± 0.499
5.729AspVal: 5.729 ± 1.471
0.637AspTrp: 0.637 ± 0.546
7.002AspTyr: 7.002 ± 1.694
0.0AspXaa: 0.0 ± 0.0
Glu
6.365GluAla: 6.365 ± 2.361
0.637GluCys: 0.637 ± 0.546
1.91GluAsp: 1.91 ± 1.637
3.819GluGlu: 3.819 ± 0.617
2.546GluPhe: 2.546 ± 0.933
4.456GluGly: 4.456 ± 0.7
1.91GluHis: 1.91 ± 0.825
1.273GluIle: 1.273 ± 1.114
5.729GluLys: 5.729 ± 3.539
4.456GluLeu: 4.456 ± 0.998
1.273GluMet: 1.273 ± 1.675
6.365GluAsn: 6.365 ± 2.748
0.637GluPro: 0.637 ± 0.557
0.637GluGln: 0.637 ± 0.557
2.546GluArg: 2.546 ± 1.279
1.91GluSer: 1.91 ± 0.98
1.273GluThr: 1.273 ± 1.091
3.183GluVal: 3.183 ± 0.896
2.546GluTrp: 2.546 ± 0.594
8.275GluTyr: 8.275 ± 0.818
0.0GluXaa: 0.0 ± 0.0
Phe
4.456PheAla: 4.456 ± 1.298
0.637PheCys: 0.637 ± 0.546
7.638PheAsp: 7.638 ± 3.637
3.819PheGlu: 3.819 ± 0.782
3.183PhePhe: 3.183 ± 1.071
5.729PheGly: 5.729 ± 2.919
0.0PheHis: 0.0 ± 0.0
1.273PheIle: 1.273 ± 1.03
1.91PheLys: 1.91 ± 0.252
2.546PheLeu: 2.546 ± 1.802
0.637PheMet: 0.637 ± 0.515
2.546PheAsn: 2.546 ± 0.933
1.91PhePro: 1.91 ± 1.754
1.273PheGln: 1.273 ± 0.397
5.092PheArg: 5.092 ± 1.333
2.546PheSer: 2.546 ± 1.212
2.546PheThr: 2.546 ± 2.061
3.183PheVal: 3.183 ± 1.071
0.0PheTrp: 0.0 ± 0.0
2.546PheTyr: 2.546 ± 0.794
0.0PheXaa: 0.0 ± 0.0
Gly
3.819GlyAla: 3.819 ± 1.276
0.0GlyCys: 0.0 ± 0.0
5.729GlyAsp: 5.729 ± 3.747
3.819GlyGlu: 3.819 ± 1.487
1.91GlyPhe: 1.91 ± 0.741
2.546GlyGly: 2.546 ± 0.769
1.273GlyHis: 1.273 ± 0.397
3.183GlyIle: 3.183 ± 1.059
5.092GlyLys: 5.092 ± 0.976
5.092GlyLeu: 5.092 ± 2.434
0.637GlyMet: 0.637 ± 0.515
2.546GlyAsn: 2.546 ± 1.443
0.0GlyPro: 0.0 ± 0.0
4.456GlyGln: 4.456 ± 1.298
2.546GlyArg: 2.546 ± 0.499
7.002GlySer: 7.002 ± 1.944
2.546GlyThr: 2.546 ± 1.443
2.546GlyVal: 2.546 ± 0.794
0.0GlyTrp: 0.0 ± 0.0
1.273GlyTyr: 1.273 ± 0.397
0.0GlyXaa: 0.0 ± 0.0
His
0.637HisAla: 0.637 ± 0.515
1.273HisCys: 1.273 ± 0.397
0.637HisAsp: 0.637 ± 0.546
1.273HisGlu: 1.273 ± 0.608
1.91HisPhe: 1.91 ± 0.741
0.0HisGly: 0.0 ± 0.0
0.637HisHis: 0.637 ± 0.546
0.637HisIle: 0.637 ± 0.546
1.273HisLys: 1.273 ± 1.091
1.273HisLeu: 1.273 ± 1.091
1.273HisMet: 1.273 ± 0.64
0.0HisAsn: 0.0 ± 0.0
0.637HisPro: 0.637 ± 0.515
0.0HisGln: 0.0 ± 0.0
1.273HisArg: 1.273 ± 0.397
0.0HisSer: 0.0 ± 0.0
0.0HisThr: 0.0 ± 0.0
1.273HisVal: 1.273 ± 0.931
0.0HisTrp: 0.0 ± 0.0
2.546HisTyr: 2.546 ± 1.315
0.0HisXaa: 0.0 ± 0.0
Ile
1.273IleAla: 1.273 ± 0.608
0.637IleCys: 0.637 ± 0.546
5.092IleAsp: 5.092 ± 0.484
2.546IleGlu: 2.546 ± 1.579
2.546IlePhe: 2.546 ± 1.044
2.546IleGly: 2.546 ± 1.279
0.0IleHis: 0.0 ± 0.0
3.819IleIle: 3.819 ± 1.919
3.183IleLys: 3.183 ± 1.619
5.092IleLeu: 5.092 ± 0.998
1.273IleMet: 1.273 ± 0.608
3.819IleAsn: 3.819 ± 1.872
1.91IlePro: 1.91 ± 1.051
1.273IleGln: 1.273 ± 1.091
2.546IleArg: 2.546 ± 1.547
6.365IleSer: 6.365 ± 1.219
5.092IleThr: 5.092 ± 1.089
5.729IleVal: 5.729 ± 2.608
0.0IleTrp: 0.0 ± 0.0
2.546IleTyr: 2.546 ± 0.499
0.0IleXaa: 0.0 ± 0.0
Lys
5.092LysAla: 5.092 ± 1.397
0.637LysCys: 0.637 ± 0.896
4.456LysAsp: 4.456 ± 2.189
3.183LysGlu: 3.183 ± 0.759
3.819LysPhe: 3.819 ± 1.481
3.819LysGly: 3.819 ± 0.782
0.0LysHis: 0.0 ± 0.0
4.456LysIle: 4.456 ± 0.998
4.456LysLys: 4.456 ± 1.454
7.638LysLeu: 7.638 ± 1.507
0.637LysMet: 0.637 ± 0.983
3.819LysAsn: 3.819 ± 1.508
2.546LysPro: 2.546 ± 1.212
3.819LysGln: 3.819 ± 1.276
3.183LysArg: 3.183 ± 0.364
4.456LysSer: 4.456 ± 2.428
3.183LysThr: 3.183 ± 1.722
4.456LysVal: 4.456 ± 0.731
0.0LysTrp: 0.0 ± 0.0
5.729LysTyr: 5.729 ± 1.227
0.0LysXaa: 0.0 ± 0.0
Leu
5.092LeuAla: 5.092 ± 2.425
2.546LeuCys: 2.546 ± 1.212
3.819LeuAsp: 3.819 ± 1.169
3.819LeuGlu: 3.819 ± 1.508
1.91LeuPhe: 1.91 ± 1.067
7.638LeuGly: 7.638 ± 2.409
1.91LeuHis: 1.91 ± 1.637
3.819LeuIle: 3.819 ± 1.229
5.729LeuLys: 5.729 ± 1.766
5.092LeuLeu: 5.092 ± 1.12
1.273LeuMet: 1.273 ± 0.397
5.092LeuAsn: 5.092 ± 1.397
3.183LeuPro: 3.183 ± 0.755
6.365LeuGln: 6.365 ± 2.421
7.638LeuArg: 7.638 ± 1.068
5.729LeuSer: 5.729 ± 0.976
3.819LeuThr: 3.819 ± 1.191
3.183LeuVal: 3.183 ± 1.514
0.0LeuTrp: 0.0 ± 0.0
3.183LeuTyr: 3.183 ± 1.846
0.0LeuXaa: 0.0 ± 0.0
Met
3.819MetAla: 3.819 ± 2.093
0.0MetCys: 0.0 ± 0.0
0.637MetAsp: 0.637 ± 0.557
1.91MetGlu: 1.91 ± 1.068
0.0MetPhe: 0.0 ± 0.0
0.637MetGly: 0.637 ± 0.557
0.0MetHis: 0.0 ± 0.0
1.273MetIle: 1.273 ± 0.64
1.273MetLys: 1.273 ± 0.397
0.637MetLeu: 0.637 ± 0.896
0.637MetMet: 0.637 ± 0.557
1.273MetAsn: 1.273 ± 1.03
1.91MetPro: 1.91 ± 0.741
0.0MetGln: 0.0 ± 0.0
1.91MetArg: 1.91 ± 0.803
0.637MetSer: 0.637 ± 0.515
1.273MetThr: 1.273 ± 0.397
1.91MetVal: 1.91 ± 0.98
0.0MetTrp: 0.0 ± 0.0
1.91MetTyr: 1.91 ± 0.825
0.0MetXaa: 0.0 ± 0.0
Asn
5.092AsnAla: 5.092 ± 0.641
1.91AsnCys: 1.91 ± 1.637
5.729AsnAsp: 5.729 ± 1.517
3.819AsnGlu: 3.819 ± 0.617
2.546AsnPhe: 2.546 ± 0.794
4.456AsnGly: 4.456 ± 2.724
1.273AsnHis: 1.273 ± 0.397
6.365AsnIle: 6.365 ± 1.087
3.183AsnLys: 3.183 ± 1.798
6.365AsnLeu: 6.365 ± 2.815
2.546AsnMet: 2.546 ± 0.768
2.546AsnAsn: 2.546 ± 0.768
3.819AsnPro: 3.819 ± 1.065
1.91AsnGln: 1.91 ± 0.98
4.456AsnArg: 4.456 ± 0.731
3.819AsnSer: 3.819 ± 1.229
4.456AsnThr: 4.456 ± 1.359
1.91AsnVal: 1.91 ± 1.047
0.637AsnTrp: 0.637 ± 0.546
1.91AsnTyr: 1.91 ± 0.741
0.0AsnXaa: 0.0 ± 0.0
Pro
1.273ProAla: 1.273 ± 0.608
0.0ProCys: 0.0 ± 0.0
0.637ProAsp: 0.637 ± 0.515
5.092ProGlu: 5.092 ± 0.842
2.546ProPhe: 2.546 ± 0.794
3.183ProGly: 3.183 ± 0.364
1.91ProHis: 1.91 ± 1.051
3.819ProIle: 3.819 ± 0.666
1.273ProLys: 1.273 ± 1.091
4.456ProLeu: 4.456 ± 1.176
0.637ProMet: 0.637 ± 0.515
0.637ProAsn: 0.637 ± 0.546
0.637ProPro: 0.637 ± 0.896
3.183ProGln: 3.183 ± 2.003
0.637ProArg: 0.637 ± 0.546
1.91ProSer: 1.91 ± 1.754
2.546ProThr: 2.546 ± 1.044
0.637ProVal: 0.637 ± 0.515
0.0ProTrp: 0.0 ± 0.0
1.91ProTyr: 1.91 ± 1.047
0.0ProXaa: 0.0 ± 0.0
Gln
3.183GlnAla: 3.183 ± 1.619
0.0GlnCys: 0.0 ± 0.0
1.91GlnAsp: 1.91 ± 0.803
2.546GlnGlu: 2.546 ± 0.768
5.092GlnPhe: 5.092 ± 1.12
2.546GlnGly: 2.546 ± 0.499
1.273GlnHis: 1.273 ± 0.608
2.546GlnIle: 2.546 ± 0.794
6.365GlnLys: 6.365 ± 3.285
5.092GlnLeu: 5.092 ± 2.519
0.637GlnMet: 0.637 ± 0.546
6.365GlnAsn: 6.365 ± 1.604
1.91GlnPro: 1.91 ± 0.252
5.092GlnGln: 5.092 ± 2.693
1.273GlnArg: 1.273 ± 0.64
3.183GlnSer: 3.183 ± 1.798
1.91GlnThr: 1.91 ± 0.252
1.91GlnVal: 1.91 ± 1.051
0.637GlnTrp: 0.637 ± 0.557
1.273GlnTyr: 1.273 ± 0.397
0.0GlnXaa: 0.0 ± 0.0
Arg
1.91ArgAla: 1.91 ± 0.252
0.637ArgCys: 0.637 ± 0.515
3.183ArgAsp: 3.183 ± 1.144
3.819ArgGlu: 3.819 ± 1.919
3.183ArgPhe: 3.183 ± 1.071
2.546ArgGly: 2.546 ± 0.933
1.91ArgHis: 1.91 ± 0.741
3.183ArgIle: 3.183 ± 1.112
4.456ArgLys: 4.456 ± 2.11
5.092ArgLeu: 5.092 ± 1.58
1.273ArgMet: 1.273 ± 0.64
5.092ArgAsn: 5.092 ± 1.038
1.91ArgPro: 1.91 ± 0.803
2.546ArgGln: 2.546 ± 1.443
0.637ArgArg: 0.637 ± 0.515
3.819ArgSer: 3.819 ± 1.487
0.637ArgThr: 0.637 ± 0.557
1.273ArgVal: 1.273 ± 0.64
0.0ArgTrp: 0.0 ± 0.0
3.819ArgTyr: 3.819 ± 1.607
0.0ArgXaa: 0.0 ± 0.0
Ser
6.365SerAla: 6.365 ± 1.454
1.91SerCys: 1.91 ± 0.803
3.819SerAsp: 3.819 ± 0.617
5.092SerGlu: 5.092 ± 2.038
1.91SerPhe: 1.91 ± 0.741
1.91SerGly: 1.91 ± 1.047
0.637SerHis: 0.637 ± 0.546
4.456SerIle: 4.456 ± 0.6
4.456SerLys: 4.456 ± 0.7
1.91SerLeu: 1.91 ± 0.803
3.819SerMet: 3.819 ± 0.691
4.456SerAsn: 4.456 ± 1.942
3.183SerPro: 3.183 ± 1.261
5.729SerGln: 5.729 ± 1.471
3.819SerArg: 3.819 ± 1.044
6.365SerSer: 6.365 ± 2.645
2.546SerThr: 2.546 ± 1.306
4.456SerVal: 4.456 ± 2.191
0.0SerTrp: 0.0 ± 0.0
0.637SerTyr: 0.637 ± 0.515
0.0SerXaa: 0.0 ± 0.0
Thr
3.819ThrAla: 3.819 ± 1.04
0.0ThrCys: 0.0 ± 0.0
3.183ThrAsp: 3.183 ± 0.755
2.546ThrGlu: 2.546 ± 0.499
3.819ThrPhe: 3.819 ± 1.191
0.0ThrGly: 0.0 ± 0.0
0.0ThrHis: 0.0 ± 0.0
2.546ThrIle: 2.546 ± 1.802
3.819ThrLys: 3.819 ± 1.065
4.456ThrLeu: 4.456 ± 1.133
0.0ThrMet: 0.0 ± 0.0
3.819ThrAsn: 3.819 ± 1.169
2.546ThrPro: 2.546 ± 0.594
1.273ThrGln: 1.273 ± 0.931
0.637ThrArg: 0.637 ± 0.515
2.546ThrSer: 2.546 ± 1.169
1.91ThrThr: 1.91 ± 1.546
3.183ThrVal: 3.183 ± 1.144
1.273ThrTrp: 1.273 ± 0.608
3.819ThrTyr: 3.819 ± 2.215
0.0ThrXaa: 0.0 ± 0.0
Val
1.91ValAla: 1.91 ± 0.252
0.0ValCys: 0.0 ± 0.0
3.819ValAsp: 3.819 ± 1.648
0.637ValGlu: 0.637 ± 0.896
1.91ValPhe: 1.91 ± 1.546
3.819ValGly: 3.819 ± 1.872
0.0ValHis: 0.0 ± 0.0
1.91ValIle: 1.91 ± 1.067
6.365ValLys: 6.365 ± 1.665
4.456ValLeu: 4.456 ± 0.6
0.0ValMet: 0.0 ± 0.0
4.456ValAsn: 4.456 ± 1.461
5.092ValPro: 5.092 ± 2.574
3.819ValGln: 3.819 ± 1.229
3.183ValArg: 3.183 ± 0.824
4.456ValSer: 4.456 ± 1.457
2.546ValThr: 2.546 ± 0.499
1.273ValVal: 1.273 ± 0.397
0.0ValTrp: 0.0 ± 0.0
2.546ValTyr: 2.546 ± 1.315
0.0ValXaa: 0.0 ± 0.0
Trp
0.0TrpAla: 0.0 ± 0.0
0.637TrpCys: 0.637 ± 0.546
0.0TrpAsp: 0.0 ± 0.0
1.273TrpGlu: 1.273 ± 0.397
0.637TrpPhe: 0.637 ± 0.546
0.0TrpGly: 0.0 ± 0.0
0.637TrpHis: 0.637 ± 0.515
1.273TrpIle: 1.273 ± 1.03
0.0TrpLys: 0.0 ± 0.0
0.637TrpLeu: 0.637 ± 0.546
0.0TrpMet: 0.0 ± 0.0
1.91TrpAsn: 1.91 ± 1.068
0.0TrpPro: 0.0 ± 0.0
1.273TrpGln: 1.273 ± 0.64
0.0TrpArg: 0.0 ± 0.0
0.0TrpSer: 0.0 ± 0.0
0.0TrpThr: 0.0 ± 0.0
0.637TrpVal: 0.637 ± 0.515
0.0TrpTrp: 0.0 ± 0.0
0.637TrpTyr: 0.637 ± 0.546
0.0TrpXaa: 0.0 ± 0.0
Tyr
3.183TyrAla: 3.183 ± 1.112
0.637TyrCys: 0.637 ± 0.515
5.729TyrAsp: 5.729 ± 0.455
0.637TyrGlu: 0.637 ± 0.515
3.183TyrPhe: 3.183 ± 1.71
2.546TyrGly: 2.546 ± 0.499
0.637TyrHis: 0.637 ± 0.546
0.637TyrIle: 0.637 ± 0.515
4.456TyrLys: 4.456 ± 1.298
5.092TyrLeu: 5.092 ± 1.937
3.183TyrMet: 3.183 ± 0.982
7.002TyrAsn: 7.002 ± 1.298
0.0TyrPro: 0.0 ± 0.0
7.002TyrGln: 7.002 ± 0.941
3.183TyrArg: 3.183 ± 1.846
1.91TyrSer: 1.91 ± 0.741
3.183TyrThr: 3.183 ± 1.144
2.546TyrVal: 2.546 ± 1.315
0.637TyrTrp: 0.637 ± 0.546
3.819TyrTyr: 3.819 ± 1.214
0.0TyrXaa: 0.0 ± 0.0
Xaa
0.0XaaAla: 0.0 ± 0.0
0.0XaaCys: 0.0 ± 0.0
0.0XaaAsp: 0.0 ± 0.0
0.0XaaGlu: 0.0 ± 0.0
0.0XaaPhe: 0.0 ± 0.0
0.0XaaGly: 0.0 ± 0.0
0.0XaaHis: 0.0 ± 0.0
0.0XaaIle: 0.0 ± 0.0
0.0XaaLys: 0.0 ± 0.0
0.0XaaLeu: 0.0 ± 0.0
0.0XaaMet: 0.0 ± 0.0
0.0XaaAsn: 0.0 ± 0.0
0.0XaaPro: 0.0 ± 0.0
0.0XaaGln: 0.0 ± 0.0
0.0XaaArg: 0.0 ± 0.0
0.0XaaSer: 0.0 ± 0.0
0.0XaaThr: 0.0 ± 0.0
0.0XaaVal: 0.0 ± 0.0
0.0XaaTrp: 0.0 ± 0.0
0.0XaaTyr: 0.0 ± 0.0
0.0XaaXaa: 0.0 ± 0.0
Statistics based on 4 proteins (1572 amino acids)

Note: The error has been estimated with the bootstraping (x100) at the protein level

Above dipeptide statistics (among other stats for this proteome) you can download from this CSV file
See this proteome in: uniprot_link
Proteome-pI is available under Creative Commons Attribution-NoDerivs license, for more details see here

Reference: Kozlowski LP. Proteome-pI 2.0: Proteome Isoelectric Point Database Update. Nucleic Acids Res. 2021, doi: 10.1093/nar/gkab944 Contact: Lukasz P. Kozlowski