Bat polyomavirus 6c

Taxonomy: Viruses; Monodnaviria; Shotokuvirae; Cossaviricota; Papovaviricetes; Sepolyvirales; Polyomaviridae; Betapolyomavirus; Dobsonia moluccensis polyomavirus 3

Average proteome isoelectric point is 5.62

Get precalculated fractions of proteins

Acidic
pI < 6.8
6.8-7.4
pI > 7.4
Basic
    
All



Virtual 2D-PAGE plot for 4 proteins (isoelectric point calculated using IPC2_protein)

Get csv file with sequences according to given criteria:
        -     Method 

     -  kDa    
                                                                                      

* You can choose from 21 different methods for calculating isoelectric point

Summary statistics related to proteome-wise predictions


    
Protein with the lowest isoelectric point:
>tr|A0A0D5ZYM9|A0A0D5ZYM9_9POLY Small t antigen OS=Bat polyomavirus 6c OX=1623688 PE=4 SV=1
MM1 pKa = 7.39GALLAVIAEE10 pKa = 4.31VAEE13 pKa = 4.37VSAVSGLSVDD23 pKa = 3.86ALLSGEE29 pKa = 4.27ALASAEE35 pKa = 4.28LIAGQVEE42 pKa = 4.86AISALEE48 pKa = 3.89GLSAVEE54 pKa = 4.08AAATLGFSAEE64 pKa = 4.18NYY66 pKa = 9.49NAIAALASLPNALSGIVGADD86 pKa = 3.11LVFNGTSVVAAAISTAVSPYY106 pKa = 9.01TYY108 pKa = 9.78DD109 pKa = 3.31YY110 pKa = 11.24SVPITNLNVNMALQVWQPDD129 pKa = 3.63LDD131 pKa = 4.09DD132 pKa = 5.53LNFPGVMPFVRR143 pKa = 11.84FLNYY147 pKa = 9.14IDD149 pKa = 3.9PMHH152 pKa = 6.68WAGGLFRR159 pKa = 11.84ALGRR163 pKa = 11.84YY164 pKa = 7.6FWQNAQRR171 pKa = 11.84QGQQMLEE178 pKa = 4.09GEE180 pKa = 4.49FRR182 pKa = 11.84EE183 pKa = 4.27LAQRR187 pKa = 11.84TATSISEE194 pKa = 4.01TLALYY199 pKa = 10.07FEE201 pKa = 4.41NARR204 pKa = 11.84WAVRR208 pKa = 11.84AVPTEE213 pKa = 3.81LYY215 pKa = 10.91GRR217 pKa = 11.84LQQYY221 pKa = 8.81YY222 pKa = 10.89AEE224 pKa = 5.08LPPLNPPQLRR234 pKa = 11.84EE235 pKa = 3.9VSRR238 pKa = 11.84RR239 pKa = 11.84TANQPFQLYY248 pKa = 10.73DD249 pKa = 4.08KK250 pKa = 10.14ILSNVEE256 pKa = 3.58SAHH259 pKa = 5.88YY260 pKa = 7.82VTKK263 pKa = 10.58VDD265 pKa = 3.97PPGGANQRR273 pKa = 11.84QTPDD277 pKa = 2.7WLLPLILGLYY287 pKa = 10.37GDD289 pKa = 5.19ISPSWEE295 pKa = 3.98TTLEE299 pKa = 3.98EE300 pKa = 5.04LEE302 pKa = 4.4EE303 pKa = 4.52EE304 pKa = 4.01EE305 pKa = 5.96DD306 pKa = 4.01GPKK309 pKa = 10.07KK310 pKa = 10.38KK311 pKa = 10.12KK312 pKa = 9.91QRR314 pKa = 11.84PSTKK318 pKa = 7.82TTPHH322 pKa = 6.98RR323 pKa = 11.84SSKK326 pKa = 8.8TYY328 pKa = 9.97SKK330 pKa = 10.44RR331 pKa = 11.84RR332 pKa = 11.84HH333 pKa = 5.04

Molecular weight: 36.47 kDa
Isoelectric point according different methods:





Protein with the highest isoelectric point:
>tr|A0A0D5ZYR4|A0A0D5ZYR4_9POLY Capsid protein VP1 OS=Bat polyomavirus 6c OX=1623688 GN=VP1 PE=3 SV=1
MM1 pKa = 7.66DD2 pKa = 4.87HH3 pKa = 7.31ALTRR7 pKa = 11.84EE8 pKa = 3.82EE9 pKa = 4.2SQRR12 pKa = 11.84LMEE15 pKa = 4.87LLNLPMEE22 pKa = 4.43QFGNFHH28 pKa = 5.99LMKK31 pKa = 10.33RR32 pKa = 11.84AFLSSIKK39 pKa = 10.08KK40 pKa = 7.26YY41 pKa = 10.73HH42 pKa = 6.79PDD44 pKa = 3.29KK45 pKa = 11.59GGDD48 pKa = 3.01EE49 pKa = 4.46SMAKK53 pKa = 10.08EE54 pKa = 4.83LISLYY59 pKa = 10.58KK60 pKa = 10.29KK61 pKa = 10.68AEE63 pKa = 4.1CHH65 pKa = 5.45VSSLEE70 pKa = 4.22TEE72 pKa = 4.6DD73 pKa = 3.89DD74 pKa = 3.76TSFTTDD80 pKa = 3.05EE81 pKa = 4.13VQKK84 pKa = 11.48ADD86 pKa = 3.27MFLYY90 pKa = 10.5LRR92 pKa = 11.84DD93 pKa = 3.49WVEE96 pKa = 4.47CNMGFPCKK104 pKa = 10.22CLFCMLRR111 pKa = 11.84KK112 pKa = 9.5RR113 pKa = 11.84HH114 pKa = 5.62NEE116 pKa = 3.55RR117 pKa = 11.84KK118 pKa = 9.94KK119 pKa = 10.82NLLHH123 pKa = 6.32NVWGTCYY130 pKa = 10.35CFKK133 pKa = 10.85CYY135 pKa = 10.1ILWFGLEE142 pKa = 4.02HH143 pKa = 6.21SWIIFLSWKK152 pKa = 10.33GIIANTPYY160 pKa = 10.65RR161 pKa = 11.84CLDD164 pKa = 3.47LL165 pKa = 6.4

Molecular weight: 19.64 kDa
Isoelectric point according different methods:





Peptides (in silico digests for buttom-up proteomics)

Below you can find in silico digests of the whole proteome with Trypsin, Chymotrypsin, Trypsin+LysC, LysN, ArgC proteases suitable for different mass spec machines.

Try
ESI
ChTry
ESI
ArgC
ESI
LysN
ESI
TryLysC
ESI

Try
MALDI
ChTry
MALDI
ArgC
MALDI
LysN
MALDI
TryLysC
MALDI

Try
LTQ
ChTry
LTQ
ArgC
LTQ
LysN
LTQ
TryLysC
LTQ

Try
MSlow
ChTry
MSlow
ArgC
MSlow
LysN
MSlow
TryLysC
MSlow

Try
MShigh
ChTry
MShigh
ArgC
MShigh
LysN
MShigh
TryLysC
MShigh

General Statistics

Number of major isoforms

Number of additional isoforms

Number of all proteins

Number of amino acids

Min. Seq. Length

Max. Seq. Length

Avg. Seq. Length

Avg. Mol. Weight

4

0

4

1532

165

674

383.0

43.45

Amino acid frequency

Ala

Cys

Asp

Glu

Phe

Gly

His

Ile

Lys

Leu

6.136 ± 1.7

2.285 ± 0.732

5.091 ± 0.42

7.768 ± 0.727

5.222 ± 0.902

5.091 ± 0.705

2.023 ± 0.432

4.308 ± 0.208

6.593 ± 1.218

10.64 ± 0.77

Met

Asn

Gln

Pro

Arg

Ser

Thr

Val

Trp

Tyr

2.807 ± 0.521

5.222 ± 0.291

5.679 ± 0.962

3.982 ± 0.384

4.504 ± 0.209

6.854 ± 0.287

5.875 ± 0.367

5.679 ± 0.967

1.371 ± 0.314

2.872 ± 0.469
Note: For amino acid frequency statistics the error has been estimated with the bootstraping (x100) at the protein level

Most of the basic statistics you can see at this page can be downloaded from this CSV file

For dipeptide frequency statistics click here
See this proteome in: uniprot_link
Proteome-pI is available under Creative Commons Attribution-NoDerivs license, for more details see here

Reference: Kozlowski LP. Proteome-pI 2.0: Proteome Isoelectric Point Database Update. Nucleic Acids Res. 2021, doi: 10.1093/nar/gkab944 Contact: Lukasz P. Kozlowski