Aquimarina sp. TRL1

Taxonomy: cellular organisms; Bacteria; FCB group; Bacteroidetes/Chlorobi group; Bacteroidetes; Flavobacteriia; Flavobacteriales; Flavobacteriaceae; Aquimarina; unclassified Aquimarina

Average proteome isoelectric point is 6.75

Get precalculated fractions of proteins

Acidic
pI < 6.8
6.8-7.4
pI > 7.4
Basic
    
All



Virtual 2D-PAGE plot for 4415 proteins (isoelectric point calculated using IPC2_protein)

Get csv file with sequences according to given criteria:
        -     Method 

     -  kDa    
                                                                                      

* You can choose from 21 different methods for calculating isoelectric point

Summary statistics related to proteome-wise predictions


    
Protein with the lowest isoelectric point:
>tr|A0A7H8PPI0|A0A7H8PPI0_9FLAO Ribonuclease Z OS=Aquimarina sp. TRL1 OX=2736252 GN=rnz PE=3 SV=1
MM1 pKa = 7.73KK2 pKa = 9.14KK3 pKa = 6.75TTYY6 pKa = 10.96LLIVFLGLLYY16 pKa = 10.23PKK18 pKa = 10.06FVSAQCEE25 pKa = 4.17VEE27 pKa = 4.35EE28 pKa = 4.4TFSVCDD34 pKa = 3.82MEE36 pKa = 5.6TVDD39 pKa = 5.0HH40 pKa = 7.01DD41 pKa = 4.54TNGTPDD47 pKa = 4.37GIINLFDD54 pKa = 3.39EE55 pKa = 5.05FQNVTGQSLTGGTWSIVPKK74 pKa = 10.32YY75 pKa = 10.57ASNLNPVTGEE85 pKa = 4.01VNVWAFPNSTVTDD98 pKa = 3.66TLEE101 pKa = 4.07EE102 pKa = 4.39YY103 pKa = 10.94VFEE106 pKa = 5.21FNTPACGDD114 pKa = 3.59TPAVIFTMILGPFSGVALPLGANNANIEE142 pKa = 3.99ICDD145 pKa = 3.88TDD147 pKa = 3.85TLNLFEE153 pKa = 5.69ALTSNEE159 pKa = 4.79SIPAPHH165 pKa = 7.24LNGTWEE171 pKa = 4.72FISNSSGAAFTGTFTLNDD189 pKa = 3.55HH190 pKa = 6.48SFSADD195 pKa = 2.79IPYY198 pKa = 10.28EE199 pKa = 3.81ITIPPINRR207 pKa = 11.84EE208 pKa = 3.89IFEE211 pKa = 4.14LRR213 pKa = 11.84YY214 pKa = 9.42VVPGMTPCATSEE226 pKa = 3.99EE227 pKa = 4.4TRR229 pKa = 11.84VRR231 pKa = 11.84VSVVRR236 pKa = 11.84QVSAGIMEE244 pKa = 5.24AGLICEE250 pKa = 4.27GDD252 pKa = 3.65ILAGLHH258 pKa = 6.77DD259 pKa = 5.07ADD261 pKa = 4.39IDD263 pKa = 4.21LRR265 pKa = 11.84DD266 pKa = 3.77DD267 pKa = 3.38QFLRR271 pKa = 11.84DD272 pKa = 3.81EE273 pKa = 4.78DD274 pKa = 4.51VGGTWSSQGADD285 pKa = 3.48PTNQISDD292 pKa = 3.84EE293 pKa = 3.98QDD295 pKa = 3.02SVINLRR301 pKa = 11.84EE302 pKa = 3.86IYY304 pKa = 10.76DD305 pKa = 3.64NVINGGNNLRR315 pKa = 11.84FGCVDD320 pKa = 3.98FGFTYY325 pKa = 10.26SVKK328 pKa = 10.16KK329 pKa = 10.44RR330 pKa = 11.84SAVCEE335 pKa = 4.3DD336 pKa = 3.87DD337 pKa = 5.23DD338 pKa = 3.93EE339 pKa = 5.05TVFFTFFEE347 pKa = 4.01QLRR350 pKa = 11.84PFNQAGEE357 pKa = 4.17IPEE360 pKa = 4.04VCANEE365 pKa = 4.2EE366 pKa = 4.26PGSIDD371 pKa = 5.36LFDD374 pKa = 4.76LLEE377 pKa = 4.08FTNEE381 pKa = 3.53NGIDD385 pKa = 4.22FIYY388 pKa = 11.1NDD390 pKa = 3.71DD391 pKa = 4.89AYY393 pKa = 11.26VKK395 pKa = 9.45WRR397 pKa = 11.84MVSGPSDD404 pKa = 3.58LPLSEE409 pKa = 4.32DD410 pKa = 3.32HH411 pKa = 6.92KK412 pKa = 11.2GTVQTLGAASGTYY425 pKa = 9.34VFEE428 pKa = 4.83FGVSPKK434 pKa = 9.94INCPGGEE441 pKa = 4.1AFCDD445 pKa = 3.57PFAAEE450 pKa = 4.56GEE452 pKa = 4.28EE453 pKa = 4.5GHH455 pKa = 7.0CEE457 pKa = 4.11FPCGVLTTQVTIRR470 pKa = 11.84VLEE473 pKa = 3.85FDD475 pKa = 4.07YY476 pKa = 11.32AGEE479 pKa = 4.25DD480 pKa = 3.26TDD482 pKa = 5.92GINICISEE490 pKa = 4.08NQIDD494 pKa = 4.43LRR496 pKa = 11.84SLLKK500 pKa = 10.35IEE502 pKa = 4.59GGNTIVDD509 pKa = 3.48TGVWTNEE516 pKa = 3.57AGEE519 pKa = 4.61EE520 pKa = 3.87IDD522 pKa = 3.49NTFVFPEE529 pKa = 4.04ISSPEE534 pKa = 3.91AFRR537 pKa = 11.84FTYY540 pKa = 9.55TATSDD545 pKa = 3.47MGCIDD550 pKa = 3.72AATLEE555 pKa = 4.54FTIHH559 pKa = 6.74PLPVAGEE566 pKa = 4.42DD567 pKa = 3.7GTASVCSDD575 pKa = 3.42NLTVTLFDD583 pKa = 4.19HH584 pKa = 7.45LEE586 pKa = 4.37GNPDD590 pKa = 3.25TTGIWTGPNGYY601 pKa = 8.05TSTDD605 pKa = 2.81HH606 pKa = 7.54LGRR609 pKa = 11.84FDD611 pKa = 4.82QNDD614 pKa = 3.52DD615 pKa = 3.62TLPILGAGRR624 pKa = 11.84FRR626 pKa = 11.84YY627 pKa = 7.99EE628 pKa = 3.76VPGNAGCLDD637 pKa = 3.71SDD639 pKa = 3.83ASFVDD644 pKa = 4.35VIIIEE649 pKa = 4.28PEE651 pKa = 3.87NIGNDD656 pKa = 3.44RR657 pKa = 11.84AEE659 pKa = 4.43TFCKK663 pKa = 9.62IDD665 pKa = 3.12GRR667 pKa = 11.84VNLFSLLDD675 pKa = 3.81RR676 pKa = 11.84NTVRR680 pKa = 11.84TGTFEE685 pKa = 4.32DD686 pKa = 4.08TDD688 pKa = 3.63DD689 pKa = 3.75TGALNSEE696 pKa = 4.19GVVEE700 pKa = 6.23FEE702 pKa = 4.15TLTNGIYY709 pKa = 9.99NFRR712 pKa = 11.84YY713 pKa = 9.65IISNTAPCEE722 pKa = 3.96EE723 pKa = 4.46SSLNVAIQIVDD734 pKa = 3.79LPEE737 pKa = 4.26PQVGDD742 pKa = 3.52QEE744 pKa = 4.92FCILDD749 pKa = 3.51AARR752 pKa = 11.84LEE754 pKa = 4.87DD755 pKa = 3.79IVVDD759 pKa = 3.33VLNYY763 pKa = 9.71NWYY766 pKa = 6.93EE767 pKa = 4.08TLEE770 pKa = 4.09GTIPIITNPILLDD783 pKa = 3.49EE784 pKa = 4.25QVFYY788 pKa = 10.74IANVDD793 pKa = 3.63ANNCEE798 pKa = 4.17SEE800 pKa = 4.2RR801 pKa = 11.84VEE803 pKa = 4.16VRR805 pKa = 11.84INILNIGEE813 pKa = 4.29RR814 pKa = 11.84SAQGEE819 pKa = 4.73LCTLDD824 pKa = 3.85FQDD827 pKa = 5.29GVSPNNDD834 pKa = 3.47VINDD838 pKa = 3.82TFDD841 pKa = 4.14LVIEE845 pKa = 4.26DD846 pKa = 4.4VYY848 pKa = 11.16NIPEE852 pKa = 4.5AFPDD856 pKa = 3.64FDD858 pKa = 4.72LKK860 pKa = 10.86IFNRR864 pKa = 11.84YY865 pKa = 8.99GSMVYY870 pKa = 10.02EE871 pKa = 4.52GNADD875 pKa = 3.55TEE877 pKa = 4.38EE878 pKa = 4.1FRR880 pKa = 11.84GEE882 pKa = 4.21SNISLRR888 pKa = 11.84LGDD891 pKa = 4.92DD892 pKa = 4.15LPSGTYY898 pKa = 9.9FYY900 pKa = 10.74IFTPNFEE907 pKa = 5.05NNFPIQGSFYY917 pKa = 10.87LSRR920 pKa = 5.17

Molecular weight: 101.33 kDa
Isoelectric point according different methods:





Protein with the highest isoelectric point:
>tr|A0A7H8PNX5|A0A7H8PNX5_9FLAO M20/M25/M40 family metallo-hydrolase OS=Aquimarina sp. TRL1 OX=2736252 GN=HN014_14800 PE=4 SV=1
MM1 pKa = 7.45KK2 pKa = 9.59RR3 pKa = 11.84TFQPSKK9 pKa = 10.15RR10 pKa = 11.84KK11 pKa = 9.6RR12 pKa = 11.84KK13 pKa = 8.29NKK15 pKa = 9.34HH16 pKa = 4.03GFRR19 pKa = 11.84EE20 pKa = 4.2RR21 pKa = 11.84MASANGRR28 pKa = 11.84KK29 pKa = 9.1VLARR33 pKa = 11.84RR34 pKa = 11.84RR35 pKa = 11.84KK36 pKa = 9.29KK37 pKa = 10.31GRR39 pKa = 11.84KK40 pKa = 7.92KK41 pKa = 10.69LSVSSEE47 pKa = 3.9LRR49 pKa = 11.84HH50 pKa = 5.43KK51 pKa = 10.29HH52 pKa = 5.04

Molecular weight: 6.28 kDa
Isoelectric point according different methods:





Peptides (in silico digests for buttom-up proteomics)

Below you can find in silico digests of the whole proteome with Trypsin, Chymotrypsin, Trypsin+LysC, LysN, ArgC proteases suitable for different mass spec machines.

Try
ESI
ChTry
ESI
ArgC
ESI
LysN
ESI
TryLysC
ESI

Try
MALDI
ChTry
MALDI
ArgC
MALDI
LysN
MALDI
TryLysC
MALDI

Try
LTQ
ChTry
LTQ
ArgC
LTQ
LysN
LTQ
TryLysC
LTQ

Try
MSlow
ChTry
MSlow
ArgC
MSlow
LysN
MSlow
TryLysC
MSlow

Try
MShigh
ChTry
MShigh
ArgC
MShigh
LysN
MShigh
TryLysC
MShigh

General Statistics

Number of major isoforms

Number of additional isoforms

Number of all proteins

Number of amino acids

Min. Seq. Length

Max. Seq. Length

Avg. Seq. Length

Avg. Mol. Weight

4415

0

4415

1568201

15

9139

355.2

40.06

Amino acid frequency

Ala

Cys

Asp

Glu

Phe

Gly

His

Ile

Lys

Leu

6.123 ± 0.042

0.791 ± 0.014

5.621 ± 0.122

6.605 ± 0.051

4.842 ± 0.047

6.452 ± 0.068

1.927 ± 0.025

8.208 ± 0.046

7.683 ± 0.089

8.952 ± 0.056

Met

Asn

Gln

Pro

Arg

Ser

Thr

Val

Trp

Tyr

1.984 ± 0.023

5.773 ± 0.044

3.425 ± 0.024

3.484 ± 0.027

3.534 ± 0.038

6.678 ± 0.034

6.524 ± 0.107

6.07 ± 0.038

1.044 ± 0.013

4.28 ± 0.032
Note: For amino acid frequency statistics the error has been estimated with the bootstraping (x100) at the protein level

Most of the basic statistics you can see at this page can be downloaded from this CSV file

For dipeptide frequency statistics click here
See this proteome in: uniprot_link
Proteome-pI is available under Creative Commons Attribution-NoDerivs license, for more details see here

Reference: Kozlowski LP. Proteome-pI 2.0: Proteome Isoelectric Point Database Update. Nucleic Acids Res. 2021, doi: 10.1093/nar/gkab944 Contact: Lukasz P. Kozlowski