Capybara microvirus Cap1_SP_128

Taxonomy: Viruses; Monodnaviria; Sangervirae; Phixviricota; Malgrandaviricetes; Petitvirales; Microviridae; unclassified Microviridae

Average proteome isoelectric point is 5.37

Get precalculated fractions of proteins

Acidic
pI < 6.8
6.8-7.4
pI > 7.4
Basic
    
All



Virtual 2D-PAGE plot for 5 proteins (isoelectric point calculated using IPC2_protein)

Get csv file with sequences according to given criteria:
        -     Method 

     -  kDa    
                                                                                      

* You can choose from 21 different methods for calculating isoelectric point

Summary statistics related to proteome-wise predictions


    
Protein with the lowest isoelectric point:
>tr|A0A4P8W499|A0A4P8W499_9VIRU Minor capsid protein OS=Capybara microvirus Cap1_SP_128 OX=2585381 PE=4 SV=1
MM1 pKa = 7.61IYY3 pKa = 10.24FYY5 pKa = 11.55VVFYY9 pKa = 11.18KK10 pKa = 10.57KK11 pKa = 10.9GNDD14 pKa = 3.79YY15 pKa = 10.08QWSYY19 pKa = 11.65PFMHH23 pKa = 7.07PSIDD27 pKa = 3.19GVTNYY32 pKa = 9.88IIEE35 pKa = 4.11QLGVDD40 pKa = 3.48VEE42 pKa = 4.44IIKK45 pKa = 10.01VIRR48 pKa = 11.84LSCCDD53 pKa = 3.45MNNQVMIPYY62 pKa = 9.82RR63 pKa = 11.84EE64 pKa = 4.06EE65 pKa = 4.02IYY67 pKa = 11.01VDD69 pKa = 3.38EE70 pKa = 5.34KK71 pKa = 11.29LDD73 pKa = 3.9QEE75 pKa = 4.07FSKK78 pKa = 10.59IKK80 pKa = 10.21KK81 pKa = 9.46EE82 pKa = 4.65KK83 pKa = 9.3EE84 pKa = 3.5LQYY87 pKa = 11.05EE88 pKa = 4.03KK89 pKa = 11.29NEE91 pKa = 4.02NVEE94 pKa = 4.17SEE96 pKa = 4.38EE97 pKa = 4.01

Molecular weight: 11.77 kDa
Isoelectric point according different methods:





Protein with the highest isoelectric point:
>tr|A0A4P8W7W7|A0A4P8W7W7_9VIRU Major capsid protein OS=Capybara microvirus Cap1_SP_128 OX=2585381 PE=3 SV=1
MM1 pKa = 7.48EE2 pKa = 5.87CLNKK6 pKa = 10.21CHH8 pKa = 6.77VLISPNRR15 pKa = 11.84VIKK18 pKa = 10.66KK19 pKa = 10.38DD20 pKa = 3.28GTLGNRR26 pKa = 11.84VDD28 pKa = 4.55FFHH31 pKa = 7.11GLLSPVEE38 pKa = 4.14QSLLPAEE45 pKa = 4.36VRR47 pKa = 11.84YY48 pKa = 10.61EE49 pKa = 3.83EE50 pKa = 4.65VPCGKK55 pKa = 9.95CVNCKK60 pKa = 9.67RR61 pKa = 11.84SKK63 pKa = 10.7SYY65 pKa = 11.29AQFLRR70 pKa = 11.84LKK72 pKa = 9.42MEE74 pKa = 3.82QYY76 pKa = 10.66SYY78 pKa = 11.09KK79 pKa = 10.8SSDD82 pKa = 2.92ICFMTFTYY90 pKa = 10.95DD91 pKa = 3.53NYY93 pKa = 10.86HH94 pKa = 6.12LPKK97 pKa = 10.56DD98 pKa = 3.49RR99 pKa = 11.84LHH101 pKa = 6.84NYY103 pKa = 10.06RR104 pKa = 11.84DD105 pKa = 3.43FQLFMKK111 pKa = 10.21RR112 pKa = 11.84FRR114 pKa = 11.84KK115 pKa = 9.6HH116 pKa = 6.12FPADD120 pKa = 4.14DD121 pKa = 3.01IRR123 pKa = 11.84YY124 pKa = 8.25YY125 pKa = 10.95CVGEE129 pKa = 3.68YY130 pKa = 10.43GEE132 pKa = 4.9RR133 pKa = 11.84YY134 pKa = 9.2GRR136 pKa = 11.84PHH138 pKa = 5.32YY139 pKa = 10.34HH140 pKa = 6.35VILFGVDD147 pKa = 3.42LFSIADD153 pKa = 3.56YY154 pKa = 11.28HH155 pKa = 7.38DD156 pKa = 3.78VNEE159 pKa = 4.72NGNILYY165 pKa = 9.86YY166 pKa = 11.22SNVIDD171 pKa = 4.35KK172 pKa = 10.3LWNNGLVNFSEE183 pKa = 4.59VNDD186 pKa = 3.64NVFGYY191 pKa = 10.17VSQYY195 pKa = 9.8GVKK198 pKa = 10.37SLTSEE203 pKa = 4.27DD204 pKa = 3.67KK205 pKa = 10.81PLVRR209 pKa = 11.84SSRR212 pKa = 11.84RR213 pKa = 11.84GGLGYY218 pKa = 10.71RR219 pKa = 11.84FLDD222 pKa = 3.95DD223 pKa = 5.31NKK225 pKa = 11.28DD226 pKa = 3.59QIIKK230 pKa = 10.41NGYY233 pKa = 8.67ILLDD237 pKa = 3.69GKK239 pKa = 10.82KK240 pKa = 9.48YY241 pKa = 10.95NCDD244 pKa = 2.8KK245 pKa = 10.71YY246 pKa = 10.85VRR248 pKa = 11.84SFLGVSDD255 pKa = 4.29EE256 pKa = 3.88WTADD260 pKa = 3.39YY261 pKa = 10.63RR262 pKa = 11.84SKK264 pKa = 11.26LDD266 pKa = 3.48YY267 pKa = 10.35QHH269 pKa = 6.65SIKK272 pKa = 10.96VKK274 pKa = 7.48TTSLSDD280 pKa = 4.01DD281 pKa = 4.12YY282 pKa = 11.5INNILAQKK290 pKa = 9.9YY291 pKa = 7.23EE292 pKa = 3.82EE293 pKa = 4.13RR294 pKa = 11.84QRR296 pKa = 11.84AKK298 pKa = 10.94ALAKK302 pKa = 10.49KK303 pKa = 10.18LL304 pKa = 3.7

Molecular weight: 35.74 kDa
Isoelectric point according different methods:





Peptides (in silico digests for buttom-up proteomics)

Below you can find in silico digests of the whole proteome with Trypsin, Chymotrypsin, Trypsin+LysC, LysN, ArgC proteases suitable for different mass spec machines.

Try
ESI
ChTry
ESI
ArgC
ESI
LysN
ESI
TryLysC
ESI

Try
MALDI
ChTry
MALDI
ArgC
MALDI
LysN
MALDI
TryLysC
MALDI

Try
LTQ
ChTry
LTQ
ArgC
LTQ
LysN
LTQ
TryLysC
LTQ

Try
MSlow
ChTry
MSlow
ArgC
MSlow
LysN
MSlow
TryLysC
MSlow

Try
MShigh
ChTry
MShigh
ArgC
MShigh
LysN
MShigh
TryLysC
MShigh

General Statistics

Number of major isoforms

Number of additional isoforms

Number of all proteins

Number of amino acids

Min. Seq. Length

Max. Seq. Length

Avg. Seq. Length

Avg. Mol. Weight

5

0

5

1304

97

539

260.8

29.57

Amino acid frequency

Ala

Cys

Asp

Glu

Phe

Gly

His

Ile

Lys

Leu

4.525 ± 1.179

1.304 ± 0.44

7.439 ± 0.636

4.908 ± 0.926

4.601 ± 0.174

6.442 ± 0.465

2.147 ± 0.452

6.135 ± 0.743

5.598 ± 1.316

7.592 ± 0.824

Met

Asn

Gln

Pro

Arg

Ser

Thr

Val

Trp

Tyr

2.147 ± 0.352

6.212 ± 0.737

4.601 ± 1.122

4.371 ± 0.403

4.371 ± 0.647

9.893 ± 1.296

4.525 ± 1.115

6.288 ± 0.593

1.227 ± 0.319

5.675 ± 0.969
Note: For amino acid frequency statistics the error has been estimated with the bootstraping (x100) at the protein level

Most of the basic statistics you can see at this page can be downloaded from this CSV file

For dipeptide frequency statistics click here
See this proteome in: uniprot_link
Proteome-pI is available under Creative Commons Attribution-NoDerivs license, for more details see here

Reference: Kozlowski LP. Proteome-pI 2.0: Proteome Isoelectric Point Database Update. Nucleic Acids Res. 2021, doi: 10.1093/nar/gkab944 Contact: Lukasz P. Kozlowski