Dichanthelium oligosanthes

Taxonomy: cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliopsida; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Dichantheliinae;

Average proteome isoelectric point is 6.85

Get precalculated fractions of proteins

Acidic
pI < 6.8
6.8-7.4
pI > 7.4
Basic
    
All



Virtual 2D-PAGE plot for 26451 proteins (isoelectric point calculated using IPC2_protein)

Get csv file with sequences according to given criteria:
        -     Method 

     -  kDa    
                                                                                      

* You can choose from 21 different methods for calculating isoelectric point

Summary statistics related to proteome-wise predictions


    
Protein with the lowest isoelectric point:
>tr|A0A1E5V8F8|A0A1E5V8F8_9POAL Uncharacterized protein OS=Dichanthelium oligosanthes OX=888268 GN=BAE44_0017539 PE=4 SV=1
MM1 pKa = 8.07DD2 pKa = 4.75CTHH5 pKa = 6.92HH6 pKa = 6.37PHH8 pKa = 6.9PPVPSPEE15 pKa = 4.3PSHH18 pKa = 6.86APAPPPTAAPQEE30 pKa = 4.13ATGDD34 pKa = 4.1SEE36 pKa = 5.39SDD38 pKa = 3.53TPVSVLLTGYY48 pKa = 10.67DD49 pKa = 3.9DD50 pKa = 4.72EE51 pKa = 7.71DD52 pKa = 4.23DD53 pKa = 5.17AEE55 pKa = 4.44SCSGGGDD62 pKa = 3.95GVCWGATSAAADD74 pKa = 3.84DD75 pKa = 4.08SDD77 pKa = 4.75RR78 pKa = 11.84DD79 pKa = 3.9DD80 pKa = 3.68VAVEE84 pKa = 3.89GDD86 pKa = 3.64EE87 pKa = 5.01DD88 pKa = 5.17DD89 pKa = 5.99EE90 pKa = 4.84VDD92 pKa = 3.01SWMAVPWWRR101 pKa = 11.84RR102 pKa = 11.84TVVEE106 pKa = 4.52DD107 pKa = 3.69AAAHH111 pKa = 5.73SGGGSVGGAAGVHH124 pKa = 5.14AAEE127 pKa = 4.52SNRR130 pKa = 11.84LFWEE134 pKa = 4.01ACIAHH139 pKa = 7.11GYY141 pKa = 8.68

Molecular weight: 14.51 kDa
Isoelectric point according different methods:





Protein with the highest isoelectric point:
>tr|A0A1E5VR02|A0A1E5VR02_9POAL ATPase_AAA_core domain-containing protein (Fragment) OS=Dichanthelium oligosanthes OX=888268 GN=BAE44_0011438 PE=3 SV=1
MM1 pKa = 7.87AGRR4 pKa = 11.84PAAIHH9 pKa = 5.29LHH11 pKa = 4.57QRR13 pKa = 11.84VIAGRR18 pKa = 11.84RR19 pKa = 11.84ARR21 pKa = 11.84LLVNAGALRR30 pKa = 11.84AHH32 pKa = 7.26LSRR35 pKa = 11.84RR36 pKa = 11.84VRR38 pKa = 11.84HH39 pKa = 5.54HH40 pKa = 6.45PRR42 pKa = 11.84RR43 pKa = 11.84HH44 pKa = 3.6VHH46 pKa = 6.39ALL48 pKa = 3.24

Molecular weight: 5.46 kDa
Isoelectric point according different methods:





Peptides (in silico digests for buttom-up proteomics)

Below you can find in silico digests of the whole proteome with Trypsin, Chymotrypsin, Trypsin+LysC, LysN, ArgC proteases suitable for different mass spec machines.

Try
ESI
ChTry
ESI
ArgC
ESI
LysN
ESI
TryLysC
ESI

Try
MALDI
ChTry
MALDI
ArgC
MALDI
LysN
MALDI
TryLysC
MALDI

Try
LTQ
ChTry
LTQ
ArgC
LTQ
LysN
LTQ
TryLysC
LTQ

Try
MSlow
ChTry
MSlow
ArgC
MSlow
LysN
MSlow
TryLysC
MSlow

Try
MShigh
ChTry
MShigh
ArgC
MShigh
LysN
MShigh
TryLysC
MShigh

General Statistics

Number of major isoforms

Number of additional isoforms

Number of all proteins

Number of amino acids

Min. Seq. Length

Max. Seq. Length

Avg. Seq. Length

Avg. Mol. Weight

26451

0

26451

9714948

9

4827

367.3

40.29

Amino acid frequency

Ala

Cys

Asp

Glu

Phe

Gly

His

Ile

Lys

Leu

9.719 ± 0.028

1.932 ± 0.008

5.387 ± 0.013

5.871 ± 0.014

3.719 ± 0.01

7.411 ± 0.015

2.444 ± 0.007

4.21 ± 0.012

4.722 ± 0.015

9.638 ± 0.018

Met

Asn

Gln

Pro

Arg

Ser

Thr

Val

Trp

Tyr

2.396 ± 0.006

3.369 ± 0.011

5.745 ± 0.018

3.377 ± 0.01

6.329 ± 0.017

8.181 ± 0.017

4.76 ± 0.009

6.902 ± 0.012

1.305 ± 0.006

2.573 ± 0.007
Note: For amino acid frequency statistics the error has been estimated with the bootstraping (x100) at the protein level

Most of the basic statistics you can see at this page can be downloaded from this CSV file

For dipeptide frequency statistics click here
See this proteome in: uniprot_link
Proteome-pI is available under Creative Commons Attribution-NoDerivs license, for more details see here

Reference: Kozlowski LP. Proteome-pI 2.0: Proteome Isoelectric Point Database Update. Nucleic Acids Res. 2021, doi: 10.1093/nar/gkab944 Contact: Lukasz P. Kozlowski