Yonghaparkia sp. Root332

Taxonomy: cellular organisms; Bacteria; Terrabacteria group; Actinobacteria; Actinomycetia; Micrococcales; Microbacteriaceae; Yonghaparkia; unclassified Yonghaparkia

Average proteome isoelectric point is 5.93

Get precalculated fractions of proteins

Acidic
pI < 6.8
6.8-7.4
pI > 7.4
Basic
    
All



Virtual 2D-PAGE plot for 2389 proteins (isoelectric point calculated using IPC2_protein)

Get csv file with sequences according to given criteria:
        -     Method 

     -  kDa    
                                                                                      

* You can choose from 21 different methods for calculating isoelectric point

Summary statistics related to proteome-wise predictions


    
Protein with the lowest isoelectric point:
>tr|A0A0Q6R9I8|A0A0Q6R9I8_9MICO 50S ribosomal protein L18 OS=Yonghaparkia sp. Root332 OX=1736516 GN=rplR PE=3 SV=1
MM1 pKa = 7.49RR2 pKa = 11.84TRR4 pKa = 11.84TRR6 pKa = 11.84LSAVALPLVAVLALSGCVPTWLSGLTGQDD35 pKa = 2.68TSTPTGEE42 pKa = 4.11EE43 pKa = 3.8VEE45 pKa = 4.58AALEE49 pKa = 4.09PYY51 pKa = 9.58YY52 pKa = 10.61RR53 pKa = 11.84QALVWEE59 pKa = 4.49RR60 pKa = 11.84CGGGAQCATAIAPLDD75 pKa = 3.59WDD77 pKa = 4.55DD78 pKa = 5.09PGAGDD83 pKa = 5.49DD84 pKa = 4.4IEE86 pKa = 4.53LALVRR91 pKa = 11.84YY92 pKa = 8.72RR93 pKa = 11.84ATDD96 pKa = 3.33EE97 pKa = 4.27AQGSLFVNPGGPGASGFDD115 pKa = 3.64FVRR118 pKa = 11.84DD119 pKa = 3.69SVDD122 pKa = 3.73FAVSEE127 pKa = 4.04RR128 pKa = 11.84LRR130 pKa = 11.84ANFDD134 pKa = 3.73VIGWDD139 pKa = 3.26PRR141 pKa = 11.84GVGRR145 pKa = 11.84SSAVTCFTDD154 pKa = 3.73PADD157 pKa = 3.68MDD159 pKa = 3.75EE160 pKa = 5.21FIYY163 pKa = 9.98GVPEE167 pKa = 4.3AEE169 pKa = 4.36PEE171 pKa = 4.18TPEE174 pKa = 3.53WVAEE178 pKa = 4.26VEE180 pKa = 4.4RR181 pKa = 11.84SAQRR185 pKa = 11.84FVDD188 pKa = 3.91ACAEE192 pKa = 4.1NTGPLLEE199 pKa = 5.3HH200 pKa = 7.03VDD202 pKa = 3.38TDD204 pKa = 3.78STVRR208 pKa = 11.84DD209 pKa = 3.69LDD211 pKa = 3.38MLRR214 pKa = 11.84AVVGDD219 pKa = 3.34EE220 pKa = 3.46ALNYY224 pKa = 10.0FGYY227 pKa = 10.43SYY229 pKa = 9.97GTEE232 pKa = 3.36IGARR236 pKa = 11.84YY237 pKa = 9.8ADD239 pKa = 3.94RR240 pKa = 11.84FPDD243 pKa = 3.26RR244 pKa = 11.84VGRR247 pKa = 11.84LVLDD251 pKa = 4.61GATDD255 pKa = 3.48PTTTQFEE262 pKa = 4.64VVLAQSIGFEE272 pKa = 4.16AALTTYY278 pKa = 9.33LTEE281 pKa = 4.3CSAAASCPFPTDD293 pKa = 2.95TTAALAIVEE302 pKa = 3.98QLYY305 pKa = 9.39QQLEE309 pKa = 4.16ADD311 pKa = 5.59PIPAADD317 pKa = 3.56GRR319 pKa = 11.84LFTDD323 pKa = 3.44SVLDD327 pKa = 3.59IAVATALYY335 pKa = 10.68DD336 pKa = 3.6EE337 pKa = 5.37ASWEE341 pKa = 4.16FLSQMFTEE349 pKa = 4.53LRR351 pKa = 11.84TGVVEE356 pKa = 4.3TGFLLADD363 pKa = 4.25FYY365 pKa = 11.6YY366 pKa = 10.74GRR368 pKa = 11.84EE369 pKa = 3.75NGEE372 pKa = 3.99YY373 pKa = 10.41VDD375 pKa = 4.47NSLEE379 pKa = 3.8AFIAINCLDD388 pKa = 3.98YY389 pKa = 10.84PVEE392 pKa = 4.74RR393 pKa = 11.84DD394 pKa = 3.14PEE396 pKa = 4.53TIVEE400 pKa = 4.08QNAAIAEE407 pKa = 4.28AAPVTSDD414 pKa = 3.27PSILGDD420 pKa = 3.41VVCQRR425 pKa = 11.84WPFAFEE431 pKa = 4.08GQLGPVSAEE440 pKa = 3.71GAPPILVVGTTGDD453 pKa = 3.54PATPYY458 pKa = 10.23VWAEE462 pKa = 3.85ALASQLDD469 pKa = 3.95SGVLLTYY476 pKa = 10.59DD477 pKa = 3.85GEE479 pKa = 4.33GHH481 pKa = 6.43IAYY484 pKa = 10.04DD485 pKa = 4.62EE486 pKa = 4.59GDD488 pKa = 3.45PCINEE493 pKa = 4.32LVDD496 pKa = 4.67DD497 pKa = 4.38YY498 pKa = 11.18FVTGAVPARR507 pKa = 11.84DD508 pKa = 3.84PVCAGG513 pKa = 3.26

Molecular weight: 55.02 kDa
Isoelectric point according different methods:





Protein with the highest isoelectric point:
>tr|A0A0Q6RN09|A0A0Q6RN09_9MICO Malto-oligosyltrehalose trehalohydrolase OS=Yonghaparkia sp. Root332 OX=1736516 GN=ASC54_02485 PE=3 SV=1
MM1 pKa = 7.07TRR3 pKa = 11.84SLHH6 pKa = 5.25FVRR9 pKa = 11.84SARR12 pKa = 11.84PHH14 pKa = 6.65ALLACAGAPSRR25 pKa = 11.84AVAPLGPRR33 pKa = 11.84TARR36 pKa = 11.84RR37 pKa = 11.84VIAPRR42 pKa = 11.84TVVARR47 pKa = 11.84RR48 pKa = 11.84IPVALPGAVAARR60 pKa = 11.84GAVLLPRR67 pKa = 11.84AVASRR72 pKa = 11.84RR73 pKa = 11.84IAVTARR79 pKa = 11.84TIGAVRR85 pKa = 11.84PCPARR90 pKa = 11.84SIAVTLPRR98 pKa = 11.84LIATRR103 pKa = 11.84SLAIPLPRR111 pKa = 11.84PVAARR116 pKa = 11.84RR117 pKa = 11.84AVLLPRR123 pKa = 11.84AIAAGRR129 pKa = 11.84VALTAGPIGAIRR141 pKa = 11.84ASATRR146 pKa = 11.84SLAIALPRR154 pKa = 11.84LTATRR159 pKa = 11.84GLAVPLPGLVATRR172 pKa = 11.84GLAVPPGPIGAFRR185 pKa = 11.84ASTTRR190 pKa = 11.84SLAVPLPRR198 pKa = 11.84AIPSGRR204 pKa = 11.84VALPTGAA211 pKa = 4.38

Molecular weight: 21.44 kDa
Isoelectric point according different methods:





Peptides (in silico digests for buttom-up proteomics)

Below you can find in silico digests of the whole proteome with Trypsin, Chymotrypsin, Trypsin+LysC, LysN, ArgC proteases suitable for different mass spec machines.

Try
ESI
ChTry
ESI
ArgC
ESI
LysN
ESI
TryLysC
ESI

Try
MALDI
ChTry
MALDI
ArgC
MALDI
LysN
MALDI
TryLysC
MALDI

Try
LTQ
ChTry
LTQ
ArgC
LTQ
LysN
LTQ
TryLysC
LTQ

Try
MSlow
ChTry
MSlow
ArgC
MSlow
LysN
MSlow
TryLysC
MSlow

Try
MShigh
ChTry
MShigh
ArgC
MShigh
LysN
MShigh
TryLysC
MShigh

General Statistics

Number of major isoforms

Number of additional isoforms

Number of all proteins

Number of amino acids

Min. Seq. Length

Max. Seq. Length

Avg. Seq. Length

Avg. Mol. Weight

2389

0

2389

775821

27

1968

324.7

34.61

Amino acid frequency

Ala

Cys

Asp

Glu

Phe

Gly

His

Ile

Lys

Leu

14.215 ± 0.084

0.457 ± 0.012

6.114 ± 0.043

6.033 ± 0.04

2.922 ± 0.029

8.999 ± 0.045

1.943 ± 0.022

4.643 ± 0.031

1.644 ± 0.039

10.393 ± 0.058

Met

Asn

Gln

Pro

Arg

Ser

Thr

Val

Trp

Tyr

1.729 ± 0.019

1.698 ± 0.028

5.569 ± 0.041

2.559 ± 0.029

7.629 ± 0.051

5.551 ± 0.03

5.678 ± 0.038

9.0 ± 0.048

1.385 ± 0.022

1.838 ± 0.024
Note: For amino acid frequency statistics the error has been estimated with the bootstraping (x100) at the protein level

Most of the basic statistics you can see at this page can be downloaded from this CSV file

For dipeptide frequency statistics click here
See this proteome in: uniprot_link
Proteome-pI is available under Creative Commons Attribution-NoDerivs license, for more details see here

Reference: Kozlowski LP. Proteome-pI 2.0: Proteome Isoelectric Point Database Update. Nucleic Acids Res. 2021, doi: 10.1093/nar/gkab944 Contact: Lukasz P. Kozlowski