Amino acid dipepetide frequency for Cleome golden mosaic virus

Apart from single amino acid frequencies one can also calculate so called amino acid dipeptide frequency.

There is 400 possibilites (441 if we consider Xaa as additional 21st amino acid representing all non-standard or unknown amino acids). Thus, if the dipeptides would be present randomly in proteins each amino acid dipeptide should be present with 0.25% frequency. As it is not the case in the nature, for better visablity all more than expected dipepetides are marked by red, and those which are underrepresented are marked by blue in the table.

All values are presented as per milles (‰), therefore need to be multiplied by 10-3.

For more information see sequence space article on Wikipedia.

AlaCysAspGluPheGlyHisIleLysLeuMetAsnProGlnArgSerThrValTrpTyrXaa
Ala
3.899AlaAla: 3.899 ± 1.328
3.899AlaCys: 3.899 ± 1.286
1.949AlaAsp: 1.949 ± 1.694
3.899AlaGlu: 3.899 ± 2.425
1.949AlaPhe: 1.949 ± 1.867
1.949AlaGly: 1.949 ± 1.271
0.0AlaHis: 0.0 ± 0.0
1.949AlaIle: 1.949 ± 1.694
5.848AlaLys: 5.848 ± 1.972
7.797AlaLeu: 7.797 ± 2.572
0.0AlaMet: 0.0 ± 0.0
1.949AlaAsn: 1.949 ± 1.271
1.949AlaPro: 1.949 ± 1.271
1.949AlaGln: 1.949 ± 1.694
0.0AlaArg: 0.0 ± 0.0
7.797AlaSer: 7.797 ± 2.772
7.797AlaThr: 7.797 ± 2.772
3.899AlaVal: 3.899 ± 2.425
1.949AlaTrp: 1.949 ± 1.271
0.0AlaTyr: 0.0 ± 0.0
0.0AlaXaa: 0.0 ± 0.0
Cys
0.0CysAla: 0.0 ± 0.0
0.0CysCys: 0.0 ± 0.0
0.0CysAsp: 0.0 ± 0.0
1.949CysGlu: 1.949 ± 1.271
0.0CysPhe: 0.0 ± 0.0
1.949CysGly: 1.949 ± 1.694
1.949CysHis: 1.949 ± 1.694
7.797CysIle: 7.797 ± 2.806
1.949CysLys: 1.949 ± 1.271
1.949CysLeu: 1.949 ± 1.867
0.0CysMet: 0.0 ± 0.0
0.0CysAsn: 0.0 ± 0.0
0.0CysPro: 0.0 ± 0.0
0.0CysGln: 0.0 ± 0.0
0.0CysArg: 0.0 ± 0.0
0.0CysSer: 0.0 ± 0.0
5.848CysThr: 5.848 ± 1.155
1.949CysVal: 1.949 ± 1.271
0.0CysTrp: 0.0 ± 0.0
0.0CysTyr: 0.0 ± 0.0
0.0CysXaa: 0.0 ± 0.0
Asp
1.949AspAla: 1.949 ± 1.271
0.0AspCys: 0.0 ± 0.0
0.0AspAsp: 0.0 ± 0.0
3.899AspGlu: 3.899 ± 1.328
1.949AspPhe: 1.949 ± 1.271
0.0AspGly: 0.0 ± 0.0
0.0AspHis: 0.0 ± 0.0
3.899AspIle: 3.899 ± 1.328
0.0AspLys: 0.0 ± 0.0
5.848AspLeu: 5.848 ± 2.766
0.0AspMet: 0.0 ± 0.0
1.949AspAsn: 1.949 ± 1.271
0.0AspPro: 0.0 ± 0.0
1.949AspGln: 1.949 ± 1.867
5.848AspArg: 5.848 ± 1.747
5.848AspSer: 5.848 ± 2.766
1.949AspThr: 1.949 ± 1.694
7.797AspVal: 7.797 ± 2.657
0.0AspTrp: 0.0 ± 0.0
0.0AspTyr: 0.0 ± 0.0
0.0AspXaa: 0.0 ± 0.0
Glu
1.949GluAla: 1.949 ± 1.271
0.0GluCys: 0.0 ± 0.0
3.899GluAsp: 3.899 ± 3.387
1.949GluGlu: 1.949 ± 1.694
1.949GluPhe: 1.949 ± 1.694
1.949GluGly: 1.949 ± 1.271
0.0GluHis: 0.0 ± 0.0
1.949GluIle: 1.949 ± 1.694
0.0GluLys: 0.0 ± 0.0
0.0GluLeu: 0.0 ± 0.0
0.0GluMet: 0.0 ± 0.0
9.747GluAsn: 9.747 ± 1.387
1.949GluPro: 1.949 ± 1.271
3.899GluGln: 3.899 ± 2.541
1.949GluArg: 1.949 ± 1.867
1.949GluSer: 1.949 ± 1.694
1.949GluThr: 1.949 ± 1.867
0.0GluVal: 0.0 ± 0.0
0.0GluTrp: 0.0 ± 0.0
0.0GluTyr: 0.0 ± 0.0
0.0GluXaa: 0.0 ± 0.0
Phe
1.949PheAla: 1.949 ± 1.867
1.949PheCys: 1.949 ± 1.271
1.949PheAsp: 1.949 ± 1.271
0.0PheGlu: 0.0 ± 0.0
0.0PhePhe: 0.0 ± 0.0
1.949PheGly: 1.949 ± 1.271
0.0PheHis: 0.0 ± 0.0
0.0PheIle: 0.0 ± 0.0
5.848PheLys: 5.848 ± 3.983
1.949PheLeu: 1.949 ± 1.867
0.0PheMet: 0.0 ± 0.0
3.899PheAsn: 3.899 ± 1.286
0.0PhePro: 0.0 ± 0.0
3.899PheGln: 3.899 ± 1.286
1.949PheArg: 1.949 ± 1.694
0.0PheSer: 0.0 ± 0.0
1.949PheThr: 1.949 ± 1.694
0.0PheVal: 0.0 ± 0.0
5.848PheTrp: 5.848 ± 1.972
5.848PheTyr: 5.848 ± 1.747
0.0PheXaa: 0.0 ± 0.0
Gly
1.949GlyAla: 1.949 ± 1.271
3.899GlyCys: 3.899 ± 1.328
1.949GlyAsp: 1.949 ± 1.694
1.949GlyGlu: 1.949 ± 1.867
0.0GlyPhe: 0.0 ± 0.0
3.899GlyGly: 3.899 ± 2.541
0.0GlyHis: 0.0 ± 0.0
1.949GlyIle: 1.949 ± 1.271
5.848GlyLys: 5.848 ± 3.812
1.949GlyLeu: 1.949 ± 1.694
0.0GlyMet: 0.0 ± 0.0
1.949GlyAsn: 1.949 ± 1.271
3.899GlyPro: 3.899 ± 2.541
5.848GlyGln: 5.848 ± 1.747
1.949GlyArg: 1.949 ± 1.867
3.899GlySer: 3.899 ± 3.387
5.848GlyThr: 5.848 ± 1.972
3.899GlyVal: 3.899 ± 2.425
0.0GlyTrp: 0.0 ± 0.0
1.949GlyTyr: 1.949 ± 1.867
0.0GlyXaa: 0.0 ± 0.0
His
1.949HisAla: 1.949 ± 1.271
0.0HisCys: 0.0 ± 0.0
3.899HisAsp: 3.899 ± 1.328
1.949HisGlu: 1.949 ± 1.867
0.0HisPhe: 0.0 ± 0.0
3.899HisGly: 3.899 ± 2.425
0.0HisHis: 0.0 ± 0.0
0.0HisIle: 0.0 ± 0.0
1.949HisLys: 1.949 ± 1.694
3.899HisLeu: 3.899 ± 2.425
1.949HisMet: 1.949 ± 1.867
0.0HisAsn: 0.0 ± 0.0
0.0HisPro: 0.0 ± 0.0
3.899HisGln: 3.899 ± 1.286
5.848HisArg: 5.848 ± 1.972
7.797HisSer: 7.797 ± 4.851
5.848HisThr: 5.848 ± 3.812
3.899HisVal: 3.899 ± 3.733
0.0HisTrp: 0.0 ± 0.0
0.0HisTyr: 0.0 ± 0.0
0.0HisXaa: 0.0 ± 0.0
Ile
0.0IleAla: 0.0 ± 0.0
0.0IleCys: 0.0 ± 0.0
1.949IleAsp: 1.949 ± 1.694
0.0IleGlu: 0.0 ± 0.0
0.0IlePhe: 0.0 ± 0.0
1.949IleGly: 1.949 ± 1.694
5.848IleHis: 5.848 ± 3.744
0.0IleIle: 0.0 ± 0.0
5.848IleLys: 5.848 ± 1.155
1.949IleLeu: 1.949 ± 1.271
0.0IleMet: 0.0 ± 0.0
0.0IleAsn: 0.0 ± 0.0
3.899IlePro: 3.899 ± 2.425
0.0IleGln: 0.0 ± 0.0
7.797IleArg: 7.797 ± 2.806
11.696IleSer: 11.696 ± 1.254
1.949IleThr: 1.949 ± 1.271
0.0IleVal: 0.0 ± 0.0
1.949IleTrp: 1.949 ± 1.271
7.797IleTyr: 7.797 ± 0.12
0.0IleXaa: 0.0 ± 0.0
Lys
3.899LysAla: 3.899 ± 3.387
0.0LysCys: 0.0 ± 0.0
0.0LysAsp: 0.0 ± 0.0
0.0LysGlu: 0.0 ± 0.0
3.899LysPhe: 3.899 ± 3.733
1.949LysGly: 1.949 ± 1.271
1.949LysHis: 1.949 ± 1.867
3.899LysIle: 3.899 ± 2.541
0.0LysLys: 0.0 ± 0.0
1.949LysLeu: 1.949 ± 1.271
0.0LysMet: 0.0 ± 1.418
3.899LysAsn: 3.899 ± 2.541
1.949LysPro: 1.949 ± 1.271
0.0LysGln: 0.0 ± 0.0
5.848LysArg: 5.848 ± 1.972
1.949LysSer: 1.949 ± 1.271
0.0LysThr: 0.0 ± 0.0
7.797LysVal: 7.797 ± 5.083
0.0LysTrp: 0.0 ± 0.0
1.949LysTyr: 1.949 ± 1.271
0.0LysXaa: 0.0 ± 0.0
Leu
1.949LeuAla: 1.949 ± 1.867
3.899LeuCys: 3.899 ± 1.286
3.899LeuAsp: 3.899 ± 2.425
0.0LeuGlu: 0.0 ± 0.0
3.899LeuPhe: 3.899 ± 1.328
5.848LeuGly: 5.848 ± 1.155
3.899LeuHis: 3.899 ± 2.425
0.0LeuIle: 0.0 ± 0.0
3.899LeuLys: 3.899 ± 2.541
3.899LeuLeu: 3.899 ± 2.541
1.949LeuMet: 1.949 ± 1.867
7.797LeuAsn: 7.797 ± 5.729
1.949LeuPro: 1.949 ± 1.694
0.0LeuGln: 0.0 ± 0.0
3.899LeuArg: 3.899 ± 1.286
3.899LeuSer: 3.899 ± 1.328
1.949LeuThr: 1.949 ± 1.694
5.848LeuVal: 5.848 ± 1.747
0.0LeuTrp: 0.0 ± 0.0
3.899LeuTyr: 3.899 ± 1.328
0.0LeuXaa: 0.0 ± 0.0
Met
5.848MetAla: 5.848 ± 2.943
0.0MetCys: 0.0 ± 0.0
3.899MetAsp: 3.899 ± 2.541
0.0MetGlu: 0.0 ± 0.0
1.949MetPhe: 1.949 ± 1.271
0.0MetGly: 0.0 ± 0.0
1.949MetHis: 1.949 ± 1.271
0.0MetIle: 0.0 ± 0.0
0.0MetLys: 0.0 ± 0.0
0.0MetLeu: 0.0 ± 0.0
0.0MetMet: 0.0 ± 0.0
1.949MetAsn: 1.949 ± 1.867
1.949MetPro: 1.949 ± 1.271
0.0MetGln: 0.0 ± 0.0
1.949MetArg: 1.949 ± 1.694
0.0MetSer: 0.0 ± 0.0
0.0MetThr: 0.0 ± 0.0
0.0MetVal: 0.0 ± 0.0
0.0MetTrp: 0.0 ± 0.0
5.848MetTyr: 5.848 ± 1.747
0.0MetXaa: 0.0 ± 0.0
Asn
3.899AsnAla: 3.899 ± 2.541
1.949AsnCys: 1.949 ± 1.694
1.949AsnAsp: 1.949 ± 1.271
5.848AsnGlu: 5.848 ± 1.972
1.949AsnPhe: 1.949 ± 1.867
3.899AsnGly: 3.899 ± 1.328
9.747AsnHis: 9.747 ± 2.793
1.949AsnIle: 1.949 ± 1.271
0.0AsnLys: 0.0 ± 0.0
1.949AsnLeu: 1.949 ± 1.271
1.949AsnMet: 1.949 ± 1.145
3.899AsnAsn: 3.899 ± 1.286
5.848AsnPro: 5.848 ± 2.766
0.0AsnGln: 0.0 ± 0.0
3.899AsnArg: 3.899 ± 1.286
3.899AsnSer: 3.899 ± 1.286
0.0AsnThr: 0.0 ± 0.0
1.949AsnVal: 1.949 ± 1.867
0.0AsnTrp: 0.0 ± 0.0
3.899AsnTyr: 3.899 ± 2.541
0.0AsnXaa: 0.0 ± 0.0
Pro
0.0ProAla: 0.0 ± 0.0
5.848ProCys: 5.848 ± 1.155
3.899ProAsp: 3.899 ± 1.328
0.0ProGlu: 0.0 ± 0.0
0.0ProPhe: 0.0 ± 0.0
1.949ProGly: 1.949 ± 1.271
1.949ProHis: 1.949 ± 1.694
0.0ProIle: 0.0 ± 0.0
3.899ProLys: 3.899 ± 2.541
1.949ProLeu: 1.949 ± 1.694
3.899ProMet: 3.899 ± 2.541
0.0ProAsn: 0.0 ± 0.0
1.949ProPro: 1.949 ± 1.694
3.899ProGln: 3.899 ± 3.387
5.848ProArg: 5.848 ± 1.972
5.848ProSer: 5.848 ± 1.972
0.0ProThr: 0.0 ± 0.0
1.949ProVal: 1.949 ± 1.271
1.949ProTrp: 1.949 ± 1.271
1.949ProTyr: 1.949 ± 1.271
0.0ProXaa: 0.0 ± 0.0
Gln
3.899GlnAla: 3.899 ± 1.328
0.0GlnCys: 0.0 ± 0.0
0.0GlnAsp: 0.0 ± 0.0
1.949GlnGlu: 1.949 ± 1.271
0.0GlnPhe: 0.0 ± 0.0
0.0GlnGly: 0.0 ± 0.0
1.949GlnHis: 1.949 ± 1.694
3.899GlnIle: 3.899 ± 3.733
0.0GlnLys: 0.0 ± 0.0
5.848GlnLeu: 5.848 ± 3.983
0.0GlnMet: 0.0 ± 0.0
0.0GlnAsn: 0.0 ± 0.0
1.949GlnPro: 1.949 ± 1.694
0.0GlnGln: 0.0 ± 0.0
3.899GlnArg: 3.899 ± 1.328
1.949GlnSer: 1.949 ± 1.271
1.949GlnThr: 1.949 ± 1.867
5.848GlnVal: 5.848 ± 1.747
0.0GlnTrp: 0.0 ± 0.0
1.949GlnTyr: 1.949 ± 1.271
0.0GlnXaa: 0.0 ± 0.0
Arg
7.797ArgAla: 7.797 ± 2.806
0.0ArgCys: 0.0 ± 0.0
7.797ArgAsp: 7.797 ± 3.041
1.949ArgGlu: 1.949 ± 1.694
11.696ArgPhe: 11.696 ± 3.495
5.848ArgGly: 5.848 ± 2.766
3.899ArgHis: 3.899 ± 1.286
9.747ArgIle: 9.747 ± 1.647
1.949ArgLys: 1.949 ± 1.271
1.949ArgLeu: 1.949 ± 1.271
3.899ArgMet: 3.899 ± 1.286
1.949ArgAsn: 1.949 ± 1.271
7.797ArgPro: 7.797 ± 3.041
0.0ArgGln: 0.0 ± 0.0
17.544ArgArg: 17.544 ± 5.97
3.899ArgSer: 3.899 ± 1.286
3.899ArgThr: 3.899 ± 3.733
3.899ArgVal: 3.899 ± 2.541
0.0ArgTrp: 0.0 ± 0.0
1.949ArgTyr: 1.949 ± 1.867
0.0ArgXaa: 0.0 ± 0.0
Ser
5.848SerAla: 5.848 ± 1.972
1.949SerCys: 1.949 ± 1.867
1.949SerAsp: 1.949 ± 1.271
0.0SerGlu: 0.0 ± 0.0
3.899SerPhe: 3.899 ± 2.425
3.899SerGly: 3.899 ± 3.733
3.899SerHis: 3.899 ± 1.286
5.848SerIle: 5.848 ± 1.155
0.0SerLys: 0.0 ± 0.0
5.848SerLeu: 5.848 ± 3.744
0.0SerMet: 0.0 ± 0.0
11.696SerAsn: 11.696 ± 3.985
5.848SerPro: 5.848 ± 1.972
1.949SerGln: 1.949 ± 1.694
7.797SerArg: 7.797 ± 0.12
7.797SerSer: 7.797 ± 6.774
1.949SerThr: 1.949 ± 1.271
7.797SerVal: 7.797 ± 2.572
0.0SerTrp: 0.0 ± 0.0
3.899SerTyr: 3.899 ± 1.286
0.0SerXaa: 0.0 ± 0.0
Thr
5.848ThrAla: 5.848 ± 2.943
1.949ThrCys: 1.949 ± 1.694
1.949ThrAsp: 1.949 ± 1.867
1.949ThrGlu: 1.949 ± 1.271
0.0ThrPhe: 0.0 ± 0.0
7.797ThrGly: 7.797 ± 2.772
5.848ThrHis: 5.848 ± 1.972
1.949ThrIle: 1.949 ± 1.694
1.949ThrLys: 1.949 ± 1.271
1.949ThrLeu: 1.949 ± 1.271
0.0ThrMet: 0.0 ± 0.0
1.949ThrAsn: 1.949 ± 1.271
1.949ThrPro: 1.949 ± 1.271
0.0ThrGln: 0.0 ± 0.0
3.899ThrArg: 3.899 ± 1.286
3.899ThrSer: 3.899 ± 2.425
3.899ThrThr: 3.899 ± 1.286
5.848ThrVal: 5.848 ± 1.155
3.899ThrTrp: 3.899 ± 2.425
1.949ThrTyr: 1.949 ± 1.867
0.0ThrXaa: 0.0 ± 0.0
Val
0.0ValAla: 0.0 ± 0.0
0.0ValCys: 0.0 ± 0.0
0.0ValAsp: 0.0 ± 0.0
1.949ValGlu: 1.949 ± 1.694
1.949ValPhe: 1.949 ± 1.271
1.949ValGly: 1.949 ± 1.271
1.949ValHis: 1.949 ± 1.867
3.899ValIle: 3.899 ± 3.733
3.899ValLys: 3.899 ± 2.541
5.848ValLeu: 5.848 ± 1.155
3.899ValMet: 3.899 ± 2.541
3.899ValAsn: 3.899 ± 2.541
3.899ValPro: 3.899 ± 1.328
5.848ValGln: 5.848 ± 1.155
5.848ValArg: 5.848 ± 1.747
7.797ValSer: 7.797 ± 4.758
5.848ValThr: 5.848 ± 1.747
1.949ValVal: 1.949 ± 1.271
1.949ValTrp: 1.949 ± 1.867
7.797ValTyr: 7.797 ± 3.041
0.0ValXaa: 0.0 ± 0.0
Trp
1.949TrpAla: 1.949 ± 1.694
0.0TrpCys: 0.0 ± 0.0
0.0TrpAsp: 0.0 ± 0.0
1.949TrpGlu: 1.949 ± 1.694
0.0TrpPhe: 0.0 ± 0.0
0.0TrpGly: 0.0 ± 0.0
0.0TrpHis: 0.0 ± 0.0
0.0TrpIle: 0.0 ± 0.0
0.0TrpLys: 0.0 ± 0.0
1.949TrpLeu: 1.949 ± 1.271
1.949TrpMet: 1.949 ± 1.271
0.0TrpAsn: 0.0 ± 0.0
0.0TrpPro: 0.0 ± 0.0
0.0TrpGln: 0.0 ± 0.0
5.848TrpArg: 5.848 ± 1.747
0.0TrpSer: 0.0 ± 0.0
1.949TrpThr: 1.949 ± 1.867
1.949TrpVal: 1.949 ± 1.271
0.0TrpTrp: 0.0 ± 0.0
0.0TrpTyr: 0.0 ± 0.0
0.0TrpXaa: 0.0 ± 0.0
Tyr
5.848TyrAla: 5.848 ± 3.812
0.0TyrCys: 0.0 ± 0.0
1.949TyrAsp: 1.949 ± 1.271
3.899TyrGlu: 3.899 ± 2.541
3.899TyrPhe: 3.899 ± 1.328
1.949TyrGly: 1.949 ± 1.271
1.949TyrHis: 1.949 ± 1.867
3.899TyrIle: 3.899 ± 1.328
0.0TyrLys: 0.0 ± 0.0
3.899TyrLeu: 3.899 ± 3.733
3.899TyrMet: 3.899 ± 1.263
1.949TyrAsn: 1.949 ± 1.271
0.0TyrPro: 0.0 ± 0.0
1.949TyrGln: 1.949 ± 1.867
5.848TyrArg: 5.848 ± 3.812
1.949TyrSer: 1.949 ± 1.271
3.899TyrThr: 3.899 ± 2.425
3.899TyrVal: 3.899 ± 1.286
0.0TyrTrp: 0.0 ± 0.0
0.0TyrTyr: 0.0 ± 0.0
0.0TyrXaa: 0.0 ± 0.0
Xaa
0.0XaaAla: 0.0 ± 0.0
0.0XaaCys: 0.0 ± 0.0
0.0XaaAsp: 0.0 ± 0.0
0.0XaaGlu: 0.0 ± 0.0
0.0XaaPhe: 0.0 ± 0.0
0.0XaaGly: 0.0 ± 0.0
0.0XaaHis: 0.0 ± 0.0
0.0XaaIle: 0.0 ± 0.0
0.0XaaLys: 0.0 ± 0.0
0.0XaaLeu: 0.0 ± 0.0
0.0XaaMet: 0.0 ± 0.0
0.0XaaAsn: 0.0 ± 0.0
0.0XaaPro: 0.0 ± 0.0
0.0XaaGln: 0.0 ± 0.0
0.0XaaArg: 0.0 ± 0.0
0.0XaaSer: 0.0 ± 0.0
0.0XaaThr: 0.0 ± 0.0
0.0XaaVal: 0.0 ± 0.0
0.0XaaTrp: 0.0 ± 0.0
0.0XaaTyr: 0.0 ± 0.0
0.0XaaXaa: 0.0 ± 0.0
Statistics based on 3 proteins (514 amino acids)

Note: The error has been estimated with the bootstraping (x100) at the protein level

Above dipeptide statistics (among other stats for this proteome) you can download from this CSV file
See this proteome in: uniprot_link
Proteome-pI is available under Creative Commons Attribution-NoDerivs license, for more details see here

Reference: Kozlowski LP. Proteome-pI 2.0: Proteome Isoelectric Point Database Update. Nucleic Acids Res. 2021, doi: 10.1093/nar/gkab944 Contact: Lukasz P. Kozlowski