Cabbage cytorhabdovirus 1

Taxonomy: Viruses; Riboviria; Orthornavirae; Negarnaviricota; Haploviricotina; Monjiviricetes; Mononegavirales; Rhabdoviridae; Betarhabdovirinae; Cytorhabdovirus; Cabbage cytorhabdovirus

Average proteome isoelectric point is 6.71

Get precalculated fractions of proteins

Acidic
pI < 6.8
6.8-7.4
pI > 7.4
Basic
    
All



Virtual 2D-PAGE plot for 6 proteins (isoelectric point calculated using IPC2_protein)

Get csv file with sequences according to given criteria:
        -     Method 

     -  kDa    
                                                                                      

* You can choose from 21 different methods for calculating isoelectric point

Summary statistics related to proteome-wise predictions


    
Protein with the lowest isoelectric point:
>tr|A0A2D2PYM8|A0A2D2PYM8_9RHAB Matrix protein OS=Cabbage cytorhabdovirus 1 OX=2051550 PE=4 SV=1
MM1 pKa = 8.2DD2 pKa = 5.15PQQSAIDD9 pKa = 3.93FSEE12 pKa = 4.04IDD14 pKa = 3.77ANLHH18 pKa = 5.41RR19 pKa = 11.84SPYY22 pKa = 9.77VVPALDD28 pKa = 4.57DD29 pKa = 4.8DD30 pKa = 4.14MDD32 pKa = 5.31GGEE35 pKa = 4.44IVQDD39 pKa = 3.8DD40 pKa = 4.33LSVPRR45 pKa = 11.84STDD48 pKa = 3.03DD49 pKa = 3.82VAPPTQKK56 pKa = 10.69SSLVSSEE63 pKa = 4.07VVEE66 pKa = 4.24SLLYY70 pKa = 9.76EE71 pKa = 4.06ASVLHH76 pKa = 6.67GIAVTPHH83 pKa = 6.12MSTTAIALAHH93 pKa = 6.3NIGLEE98 pKa = 4.01PHH100 pKa = 6.04SLDD103 pKa = 3.04WFLAGISYY111 pKa = 10.83ANNSMIVEE119 pKa = 4.27KK120 pKa = 10.49LSSIIKK126 pKa = 10.22DD127 pKa = 3.45MQIEE131 pKa = 4.31TRR133 pKa = 11.84NLQTATSSVAAVSNEE148 pKa = 3.48FLGKK152 pKa = 9.22MSRR155 pKa = 11.84NKK157 pKa = 10.45RR158 pKa = 11.84EE159 pKa = 4.52IIDD162 pKa = 3.57EE163 pKa = 4.15MEE165 pKa = 4.04KK166 pKa = 9.78TRR168 pKa = 11.84EE169 pKa = 4.04SVLNAVASIQSAEE182 pKa = 4.19LGSHH186 pKa = 6.62IGDD189 pKa = 3.74DD190 pKa = 4.26FVNLTVNPEE199 pKa = 4.08GTSEE203 pKa = 4.28RR204 pKa = 11.84STVPPPAPVDD214 pKa = 3.33AGLLSKK220 pKa = 10.77VLSNPVTLKK229 pKa = 11.03SPDD232 pKa = 3.5EE233 pKa = 3.54ILYY236 pKa = 9.68ARR238 pKa = 11.84KK239 pKa = 9.93YY240 pKa = 10.84KK241 pKa = 10.77LLLDD245 pKa = 4.55LGIEE249 pKa = 3.97IPKK252 pKa = 10.69ANLSPDD258 pKa = 2.95IMNTLIPDD266 pKa = 3.82WQLEE270 pKa = 4.08AAEE273 pKa = 5.08AGLDD277 pKa = 3.59SKK279 pKa = 10.12TKK281 pKa = 10.09MEE283 pKa = 4.49LTDD286 pKa = 3.78EE287 pKa = 4.63LLDD290 pKa = 4.34IVITLNLII298 pKa = 3.82

Molecular weight: 32.33 kDa
Isoelectric point according different methods:





Protein with the highest isoelectric point:
>tr|A0A2D2PYL4|A0A2D2PYL4_9RHAB Glycoprotein OS=Cabbage cytorhabdovirus 1 OX=2051550 PE=4 SV=1
MM1 pKa = 7.58CLSCLKK7 pKa = 10.28YY8 pKa = 10.72VWNLCLTMCDD18 pKa = 3.07LRR20 pKa = 11.84KK21 pKa = 9.62LVRR24 pKa = 11.84VTMINVNDD32 pKa = 3.49VRR34 pKa = 11.84KK35 pKa = 9.98QIIKK39 pKa = 10.51SGSLTSAVGTGYY51 pKa = 11.1VYY53 pKa = 10.84DD54 pKa = 4.05GSYY57 pKa = 11.05NKK59 pKa = 10.03YY60 pKa = 9.56ARR62 pKa = 11.84KK63 pKa = 9.7RR64 pKa = 11.84EE65 pKa = 3.97LNLRR69 pKa = 11.84VSSSGDD75 pKa = 3.14KK76 pKa = 10.56NIMMRR81 pKa = 11.84HH82 pKa = 4.69VPIFDD87 pKa = 5.11DD88 pKa = 3.67EE89 pKa = 4.4DD90 pKa = 3.6LRR92 pKa = 11.84ALRR95 pKa = 11.84SEE97 pKa = 4.29ANSNKK102 pKa = 9.82YY103 pKa = 9.21IHH105 pKa = 6.85IGCLTISIEE114 pKa = 4.05PLMHH118 pKa = 6.58KK119 pKa = 10.08RR120 pKa = 11.84YY121 pKa = 9.07MDD123 pKa = 4.17LYY125 pKa = 8.05GDD127 pKa = 3.9KK128 pKa = 10.17MRR130 pKa = 11.84GICAVIDD137 pKa = 3.52TTFADD142 pKa = 3.95PAEE145 pKa = 4.84SIISAHH151 pKa = 6.8RR152 pKa = 11.84YY153 pKa = 7.26EE154 pKa = 4.35LSKK157 pKa = 11.12GRR159 pKa = 11.84ADD161 pKa = 3.67FVSMPNHH168 pKa = 6.43CLSLLDD174 pKa = 4.42PNLKK178 pKa = 9.67QRR180 pKa = 11.84LSVMISLDD188 pKa = 3.9GINVKK193 pKa = 10.21KK194 pKa = 10.34GNEE197 pKa = 3.97MFNVCIGYY205 pKa = 9.47IVTGVNTLNPTKK217 pKa = 10.15AVSMSNIPITGTSEE231 pKa = 4.26CEE233 pKa = 3.9PGDD236 pKa = 3.69LSEE239 pKa = 6.36DD240 pKa = 3.29MLEE243 pKa = 4.66GIKK246 pKa = 10.69GSNGNLLISHH256 pKa = 7.42DD257 pKa = 4.38PSDD260 pKa = 4.14DD261 pKa = 4.32DD262 pKa = 5.47IYY264 pKa = 10.96IKK266 pKa = 10.94SKK268 pKa = 11.04GSFLSNLSGKK278 pKa = 7.76TKK280 pKa = 9.92IIKK283 pKa = 9.74RR284 pKa = 11.84RR285 pKa = 11.84TMRR288 pKa = 11.84AKK290 pKa = 10.51PIDD293 pKa = 3.74ITPADD298 pKa = 3.76HH299 pKa = 6.66NSNVRR304 pKa = 11.84SISSDD309 pKa = 2.85EE310 pKa = 4.01HH311 pKa = 7.81LGEE314 pKa = 4.18SEE316 pKa = 4.55RR317 pKa = 11.84RR318 pKa = 11.84SCSKK322 pKa = 10.41ISASDD327 pKa = 3.98CYY329 pKa = 9.89QTLNHH334 pKa = 5.89QAVLKK339 pKa = 10.25RR340 pKa = 11.84AMSSRR345 pKa = 11.84YY346 pKa = 9.13GG347 pKa = 3.31

Molecular weight: 38.67 kDa
Isoelectric point according different methods:





Peptides (in silico digests for buttom-up proteomics)

Below you can find in silico digests of the whole proteome with Trypsin, Chymotrypsin, Trypsin+LysC, LysN, ArgC proteases suitable for different mass spec machines.

Try
ESI
ChTry
ESI
ArgC
ESI
LysN
ESI
TryLysC
ESI

Try
MALDI
ChTry
MALDI
ArgC
MALDI
LysN
MALDI
TryLysC
MALDI

Try
LTQ
ChTry
LTQ
ArgC
LTQ
LysN
LTQ
TryLysC
LTQ

Try
MSlow
ChTry
MSlow
ArgC
MSlow
LysN
MSlow
TryLysC
MSlow

Try
MShigh
ChTry
MShigh
ArgC
MShigh
LysN
MShigh
TryLysC
MShigh

General Statistics

Number of major isoforms

Number of additional isoforms

Number of all proteins

Number of amino acids

Min. Seq. Length

Max. Seq. Length

Avg. Seq. Length

Avg. Mol. Weight

6

0

6

3919

168

2071

653.2

73.49

Amino acid frequency

Ala

Cys

Asp

Glu

Phe

Gly

His

Ile

Lys

Leu

5.945 ± 0.953

1.863 ± 0.421

5.639 ± 0.466

5.588 ± 0.443

3.292 ± 0.431

5.537 ± 0.262

2.297 ± 0.152

6.405 ± 0.343

6.073 ± 0.543

10.564 ± 0.801

Met

Asn

Gln

Pro

Arg

Ser

Thr

Val

Trp

Tyr

3.343 ± 0.196

4.925 ± 0.284

4.772 ± 0.274

2.679 ± 0.386

5.41 ± 0.417

8.497 ± 0.824

5.716 ± 0.444

6.634 ± 0.451

1.531 ± 0.286

3.292 ± 0.217
Note: For amino acid frequency statistics the error has been estimated with the bootstraping (x100) at the protein level

Most of the basic statistics you can see at this page can be downloaded from this CSV file

For dipeptide frequency statistics click here
See this proteome in: uniprot_link
Proteome-pI is available under Creative Commons Attribution-NoDerivs license, for more details see here

Reference: Kozlowski LP. Proteome-pI 2.0: Proteome Isoelectric Point Database Update. Nucleic Acids Res. 2021, doi: 10.1093/nar/gkab944 Contact: Lukasz P. Kozlowski