Faeces associated gemycircularvirus 16

Taxonomy: Viruses; Monodnaviria; Shotokuvirae; Cressdnaviricota; Repensiviricetes; Geplafuvirales; Genomoviridae; Gemycircularvirus; Gemycircularvirus sheas1; Sheep associated gemycircularvirus 1

Average proteome isoelectric point is 6.99

Get precalculated fractions of proteins

Acidic
pI < 6.8
6.8-7.4
pI > 7.4
Basic
    
All



Virtual 2D-PAGE plot for 3 proteins (isoelectric point calculated using IPC2_protein)

Get csv file with sequences according to given criteria:
        -     Method 

     -  kDa    
                                                                                      

* You can choose from 21 different methods for calculating isoelectric point

Summary statistics related to proteome-wise predictions


    
Protein with the lowest isoelectric point:
>tr|A0A160HWN0|A0A160HWN0_9VIRU Replication-associated protein OS=Faeces associated gemycircularvirus 16 OX=1843736 PE=3 SV=1
MM1 pKa = 6.93TQMLFCNSKK10 pKa = 10.64YY11 pKa = 11.1VLLTYY16 pKa = 9.13AQCGDD21 pKa = 3.67LDD23 pKa = 3.59EE24 pKa = 4.86WAVSDD29 pKa = 4.21HH30 pKa = 6.46LSSLGAEE37 pKa = 4.23CIVARR42 pKa = 11.84EE43 pKa = 4.04LHH45 pKa = 6.0PTTGGVHH52 pKa = 5.86LHH54 pKa = 5.79VFVDD58 pKa = 4.54FGRR61 pKa = 11.84KK62 pKa = 7.9FRR64 pKa = 11.84SRR66 pKa = 11.84RR67 pKa = 11.84VDD69 pKa = 2.87IFDD72 pKa = 3.52VEE74 pKa = 4.44GRR76 pKa = 11.84HH77 pKa = 5.97PNVVPSKK84 pKa = 8.26GTPEE88 pKa = 3.8KK89 pKa = 10.85GYY91 pKa = 10.88DD92 pKa = 3.43YY93 pKa = 10.61AIKK96 pKa = 10.61DD97 pKa = 3.82GEE99 pKa = 4.57VVAGGLEE106 pKa = 4.08RR107 pKa = 11.84PRR109 pKa = 11.84GGRR112 pKa = 11.84PGTVSGLEE120 pKa = 4.4AIAHH124 pKa = 5.74LCEE127 pKa = 4.35TQDD130 pKa = 3.61EE131 pKa = 4.36FLDD134 pKa = 3.72IYY136 pKa = 11.48GEE138 pKa = 3.96VDD140 pKa = 2.94TRR142 pKa = 11.84GLIKK146 pKa = 10.77NFANVRR152 pKa = 11.84SYY154 pKa = 11.77AKK156 pKa = 9.08WRR158 pKa = 11.84YY159 pKa = 10.07AGTLPKK165 pKa = 10.45YY166 pKa = 9.07EE167 pKa = 4.12SPYY170 pKa = 10.52SIGEE174 pKa = 3.78FRR176 pKa = 11.84RR177 pKa = 11.84GSDD180 pKa = 5.52GRR182 pKa = 11.84DD183 pKa = 2.71QWLAQSGIRR192 pKa = 11.84SGDD195 pKa = 3.58LVVSKK200 pKa = 10.33CFQQ203 pKa = 3.47

Molecular weight: 22.61 kDa
Isoelectric point according different methods:





Protein with the highest isoelectric point:
>tr|A0A168MG69|A0A168MG69_9VIRU Capsid protein OS=Faeces associated gemycircularvirus 16 OX=1843736 PE=4 SV=1
MM1 pKa = 7.65PRR3 pKa = 11.84FKK5 pKa = 10.87NRR7 pKa = 11.84RR8 pKa = 11.84TRR10 pKa = 11.84FARR13 pKa = 11.84KK14 pKa = 8.7AKK16 pKa = 9.69VWFKK20 pKa = 11.1EE21 pKa = 3.54KK22 pKa = 10.55LPRR25 pKa = 11.84STRR28 pKa = 11.84RR29 pKa = 11.84VTKK32 pKa = 8.3RR33 pKa = 11.84TYY35 pKa = 9.6RR36 pKa = 11.84RR37 pKa = 11.84RR38 pKa = 11.84RR39 pKa = 11.84PMTKK43 pKa = 9.84EE44 pKa = 3.59VDD46 pKa = 3.58PQPQRR51 pKa = 11.84RR52 pKa = 11.84SRR54 pKa = 11.84KK55 pKa = 8.15KK56 pKa = 8.5GCHH59 pKa = 5.87ASVTNPTLDD68 pKa = 3.68PLIASSASPAILGSGRR84 pKa = 11.84PAPSGAPAYY93 pKa = 7.21TYY95 pKa = 9.09CIPWIATRR103 pKa = 11.84RR104 pKa = 11.84KK105 pKa = 8.0PANVGNSAMAQLGTGTPYY123 pKa = 10.31MKK125 pKa = 10.55GLSEE129 pKa = 5.29NITISTTGAAPWQWRR144 pKa = 11.84RR145 pKa = 11.84VCFTFKK151 pKa = 10.44SKK153 pKa = 11.16YY154 pKa = 10.26LIEE157 pKa = 4.3QFTISQGDD165 pKa = 3.68DD166 pKa = 3.9LIDD169 pKa = 4.34FNHH172 pKa = 7.29DD173 pKa = 3.44PFFSNGYY180 pKa = 8.6NDD182 pKa = 3.07SSGVFRR188 pKa = 11.84PMYY191 pKa = 10.53DD192 pKa = 2.97LASYY196 pKa = 9.53YY197 pKa = 10.78GKK199 pKa = 10.11HH200 pKa = 5.66NNPLKK205 pKa = 10.54FRR207 pKa = 11.84ARR209 pKa = 11.84SPQHH213 pKa = 5.33TLGFSTLCSVVAAQQLPGQPTQADD237 pKa = 4.57YY238 pKa = 11.49INVMTAKK245 pKa = 9.69TDD247 pKa = 3.54NTEE250 pKa = 3.74VTIKK254 pKa = 10.45YY255 pKa = 9.9DD256 pKa = 3.34KK257 pKa = 10.56TVTIASGNEE266 pKa = 3.31AGVQRR271 pKa = 11.84NYY273 pKa = 10.6RR274 pKa = 11.84RR275 pKa = 11.84YY276 pKa = 9.74HH277 pKa = 6.11PMNKK281 pKa = 8.41TLVYY285 pKa = 10.71DD286 pKa = 3.77SLEE289 pKa = 3.9QGSNSNYY296 pKa = 10.58DD297 pKa = 3.49SMSTEE302 pKa = 4.37AKK304 pKa = 10.09PGMGDD309 pKa = 3.59YY310 pKa = 10.92YY311 pKa = 11.56VVDD314 pKa = 4.59FFQARR319 pKa = 11.84YY320 pKa = 8.86LADD323 pKa = 4.58ADD325 pKa = 4.18DD326 pKa = 4.88GNLIFDD332 pKa = 4.66PRR334 pKa = 11.84ATLYY338 pKa = 8.62WHH340 pKa = 6.56EE341 pKa = 4.23RR342 pKa = 3.47

Molecular weight: 38.83 kDa
Isoelectric point according different methods:





Peptides (in silico digests for buttom-up proteomics)

Below you can find in silico digests of the whole proteome with Trypsin, Chymotrypsin, Trypsin+LysC, LysN, ArgC proteases suitable for different mass spec machines.

Try
ESI
ChTry
ESI
ArgC
ESI
LysN
ESI
TryLysC
ESI

Try
MALDI
ChTry
MALDI
ArgC
MALDI
LysN
MALDI
TryLysC
MALDI

Try
LTQ
ChTry
LTQ
ArgC
LTQ
LysN
LTQ
TryLysC
LTQ

Try
MSlow
ChTry
MSlow
ArgC
MSlow
LysN
MSlow
TryLysC
MSlow

Try
MShigh
ChTry
MShigh
ArgC
MShigh
LysN
MShigh
TryLysC
MShigh

General Statistics

Number of major isoforms

Number of additional isoforms

Number of all proteins

Number of amino acids

Min. Seq. Length

Max. Seq. Length

Avg. Seq. Length

Avg. Mol. Weight

3

0

3

881

203

342

293.7

33.05

Amino acid frequency

Ala

Cys

Asp

Glu

Phe

Gly

His

Ile

Lys

Leu

7.151 ± 0.545

1.93 ± 0.369

6.47 ± 0.447

4.654 ± 0.995

4.881 ± 0.368

9.194 ± 1.483

2.497 ± 0.36

3.973 ± 0.098

5.108 ± 0.367

6.583 ± 0.662

Met

Asn

Gln

Pro

Arg

Ser

Thr

Val

Trp

Tyr

1.93 ± 0.386

3.519 ± 0.861

5.335 ± 0.825

3.065 ± 0.538

8.059 ± 0.36

6.924 ± 0.361

5.675 ± 1.226

6.47 ± 0.913

1.93 ± 0.356

4.654 ± 0.456
Note: For amino acid frequency statistics the error has been estimated with the bootstraping (x100) at the protein level

Most of the basic statistics you can see at this page can be downloaded from this CSV file

For dipeptide frequency statistics click here
See this proteome in: uniprot_link
Proteome-pI is available under Creative Commons Attribution-NoDerivs license, for more details see here

Reference: Kozlowski LP. Proteome-pI 2.0: Proteome Isoelectric Point Database Update. Nucleic Acids Res. 2021, doi: 10.1093/nar/gkab944 Contact: Lukasz P. Kozlowski