Amino acid dipepetide frequency for Capybara microvirus Cap3_SP_645

Apart from single amino acid frequencies one can also calculate so called amino acid dipeptide frequency.

There is 400 possibilites (441 if we consider Xaa as additional 21st amino acid representing all non-standard or unknown amino acids). Thus, if the dipeptides would be present randomly in proteins each amino acid dipeptide should be present with 0.25% frequency. As it is not the case in the nature, for better visablity all more than expected dipepetides are marked by red, and those which are underrepresented are marked by blue in the table.

All values are presented as per milles (‰), therefore need to be multiplied by 10-3.

For more information see sequence space article on Wikipedia.

AlaCysAspGluPheGlyHisIleLysLeuMetAsnProGlnArgSerThrValTrpTyrXaa
Ala
9.494AlaAla: 9.494 ± 1.39
0.0AlaCys: 0.0 ± 0.0
7.12AlaAsp: 7.12 ± 2.765
6.329AlaGlu: 6.329 ± 2.034
4.747AlaPhe: 4.747 ± 1.101
4.747AlaGly: 4.747 ± 1.307
1.582AlaHis: 1.582 ± 0.919
2.373AlaIle: 2.373 ± 0.889
2.373AlaLys: 2.373 ± 1.404
3.956AlaLeu: 3.956 ± 1.194
2.373AlaMet: 2.373 ± 0.889
4.747AlaAsn: 4.747 ± 1.103
1.582AlaPro: 1.582 ± 0.723
7.911AlaGln: 7.911 ± 5.447
7.12AlaArg: 7.12 ± 0.669
3.956AlaSer: 3.956 ± 1.194
7.911AlaThr: 7.911 ± 2.167
7.12AlaVal: 7.12 ± 3.111
0.0AlaTrp: 0.0 ± 0.0
4.747AlaTyr: 4.747 ± 1.062
0.0AlaXaa: 0.0 ± 0.0
Cys
0.0CysAla: 0.0 ± 0.0
0.0CysCys: 0.0 ± 0.0
0.0CysAsp: 0.0 ± 0.0
0.791CysGlu: 0.791 ± 0.459
0.0CysPhe: 0.0 ± 0.0
0.0CysGly: 0.0 ± 0.0
0.0CysHis: 0.0 ± 0.0
0.0CysIle: 0.0 ± 0.0
0.0CysLys: 0.0 ± 0.0
0.0CysLeu: 0.0 ± 0.0
0.791CysMet: 0.791 ± 1.025
0.791CysAsn: 0.791 ± 0.459
0.0CysPro: 0.0 ± 0.0
0.0CysGln: 0.0 ± 0.0
0.0CysArg: 0.0 ± 0.0
0.0CysSer: 0.0 ± 0.0
0.0CysThr: 0.0 ± 0.0
0.0CysVal: 0.0 ± 0.0
0.0CysTrp: 0.0 ± 0.0
0.0CysTyr: 0.0 ± 0.0
0.0CysXaa: 0.0 ± 0.0
Asp
5.538AspAla: 5.538 ± 0.938
0.0AspCys: 0.0 ± 0.0
3.165AspAsp: 3.165 ± 2.019
3.165AspGlu: 3.165 ± 2.084
3.956AspPhe: 3.956 ± 1.796
1.582AspGly: 1.582 ± 0.919
0.791AspHis: 0.791 ± 0.459
3.165AspIle: 3.165 ± 1.321
3.956AspLys: 3.956 ± 1.194
4.747AspLeu: 4.747 ± 0.722
1.582AspMet: 1.582 ± 0.944
3.956AspAsn: 3.956 ± 1.189
1.582AspPro: 1.582 ± 0.963
0.0AspGln: 0.0 ± 0.0
4.747AspArg: 4.747 ± 2.338
5.538AspSer: 5.538 ± 0.654
3.956AspThr: 3.956 ± 1.327
2.373AspVal: 2.373 ± 1.194
0.0AspTrp: 0.0 ± 0.0
3.956AspTyr: 3.956 ± 0.541
0.0AspXaa: 0.0 ± 0.0
Glu
3.165GluAla: 3.165 ± 1.999
0.0GluCys: 0.0 ± 0.0
0.0GluAsp: 0.0 ± 0.0
3.956GluGlu: 3.956 ± 1.992
1.582GluPhe: 1.582 ± 1.168
2.373GluGly: 2.373 ± 1.415
1.582GluHis: 1.582 ± 0.608
2.373GluIle: 2.373 ± 0.951
1.582GluLys: 1.582 ± 1.48
1.582GluLeu: 1.582 ± 1.502
1.582GluMet: 1.582 ± 0.944
2.373GluAsn: 2.373 ± 0.68
0.791GluPro: 0.791 ± 1.025
4.747GluGln: 4.747 ± 0.801
1.582GluArg: 1.582 ± 0.919
3.165GluSer: 3.165 ± 1.618
3.165GluThr: 3.165 ± 1.999
3.956GluVal: 3.956 ± 1.976
0.791GluTrp: 0.791 ± 0.74
3.165GluTyr: 3.165 ± 0.675
0.0GluXaa: 0.0 ± 0.0
Phe
2.373PheAla: 2.373 ± 1.108
0.0PheCys: 0.0 ± 0.0
3.165PheAsp: 3.165 ± 1.847
1.582PheGlu: 1.582 ± 1.168
4.747PhePhe: 4.747 ± 1.768
6.329PheGly: 6.329 ± 2.614
1.582PheHis: 1.582 ± 0.723
2.373PheIle: 2.373 ± 0.924
1.582PheLys: 1.582 ± 0.963
3.165PheLeu: 3.165 ± 2.28
4.747PheMet: 4.747 ± 1.986
5.538PheAsn: 5.538 ± 1.582
3.165PhePro: 3.165 ± 1.447
0.791PheGln: 0.791 ± 0.459
3.165PheArg: 3.165 ± 2.129
0.791PheSer: 0.791 ± 0.459
3.165PheThr: 3.165 ± 1.436
3.956PheVal: 3.956 ± 1.614
0.791PheTrp: 0.791 ± 0.459
0.791PheTyr: 0.791 ± 0.459
0.0PheXaa: 0.0 ± 0.0
Gly
4.747GlyAla: 4.747 ± 1.365
0.0GlyCys: 0.0 ± 0.0
3.165GlyAsp: 3.165 ± 1.307
5.538GlyGlu: 5.538 ± 2.598
2.373GlyPhe: 2.373 ± 1.274
8.703GlyGly: 8.703 ± 3.019
2.373GlyHis: 2.373 ± 0.951
0.791GlyIle: 0.791 ± 0.751
1.582GlyLys: 1.582 ± 0.608
9.494GlyLeu: 9.494 ± 1.361
0.791GlyMet: 0.791 ± 0.751
4.747GlyAsn: 4.747 ± 1.307
0.791GlyPro: 0.791 ± 0.459
3.165GlyGln: 3.165 ± 0.961
2.373GlyArg: 2.373 ± 0.68
7.911GlySer: 7.911 ± 1.49
6.329GlyThr: 6.329 ± 3.675
3.956GlyVal: 3.956 ± 1.703
0.791GlyTrp: 0.791 ± 0.751
3.165GlyTyr: 3.165 ± 1.838
0.0GlyXaa: 0.0 ± 0.0
His
0.0HisAla: 0.0 ± 0.0
0.0HisCys: 0.0 ± 0.0
1.582HisAsp: 1.582 ± 0.723
0.0HisGlu: 0.0 ± 0.0
2.373HisPhe: 2.373 ± 0.951
2.373HisGly: 2.373 ± 0.951
0.0HisHis: 0.0 ± 0.0
0.791HisIle: 0.791 ± 0.751
0.0HisLys: 0.0 ± 0.0
1.582HisLeu: 1.582 ± 0.944
0.0HisMet: 0.0 ± 0.0
1.582HisAsn: 1.582 ± 0.919
0.791HisPro: 0.791 ± 0.829
0.0HisGln: 0.0 ± 0.0
0.791HisArg: 0.791 ± 0.829
0.791HisSer: 0.791 ± 0.459
0.791HisThr: 0.791 ± 0.74
0.791HisVal: 0.791 ± 0.459
0.791HisTrp: 0.791 ± 0.751
0.791HisTyr: 0.791 ± 0.459
0.0HisXaa: 0.0 ± 0.0
Ile
3.165IleAla: 3.165 ± 2.129
0.0IleCys: 0.0 ± 0.0
3.165IleAsp: 3.165 ± 0.838
0.0IleGlu: 0.0 ± 0.0
1.582IlePhe: 1.582 ± 0.723
3.956IleGly: 3.956 ± 2.008
0.0IleHis: 0.0 ± 0.0
0.791IleIle: 0.791 ± 0.459
1.582IleLys: 1.582 ± 0.944
2.373IleLeu: 2.373 ± 1.401
1.582IleMet: 1.582 ± 0.769
3.165IleAsn: 3.165 ± 1.397
1.582IlePro: 1.582 ± 0.919
2.373IleGln: 2.373 ± 0.784
4.747IleArg: 4.747 ± 2.436
5.538IleSer: 5.538 ± 1.275
1.582IleThr: 1.582 ± 0.723
2.373IleVal: 2.373 ± 1.626
0.0IleTrp: 0.0 ± 0.0
2.373IleTyr: 2.373 ± 0.784
0.0IleXaa: 0.0 ± 0.0
Lys
3.165LysAla: 3.165 ± 1.298
0.791LysCys: 0.791 ± 1.025
1.582LysAsp: 1.582 ± 1.657
3.956LysGlu: 3.956 ± 1.266
4.747LysPhe: 4.747 ± 1.307
3.956LysGly: 3.956 ± 1.194
2.373LysHis: 2.373 ± 1.194
3.165LysIle: 3.165 ± 1.618
1.582LysLys: 1.582 ± 1.502
2.373LysLeu: 2.373 ± 0.68
0.791LysMet: 0.791 ± 1.025
0.791LysAsn: 0.791 ± 0.751
0.0LysPro: 0.0 ± 0.0
0.791LysGln: 0.791 ± 0.74
2.373LysArg: 2.373 ± 0.68
3.956LysSer: 3.956 ± 1.992
2.373LysThr: 2.373 ± 1.378
2.373LysVal: 2.373 ± 1.626
0.0LysTrp: 0.0 ± 0.0
1.582LysTyr: 1.582 ± 0.944
0.0LysXaa: 0.0 ± 0.0
Leu
7.12LeuAla: 7.12 ± 0.995
0.0LeuCys: 0.0 ± 0.0
3.165LeuAsp: 3.165 ± 0.675
0.791LeuGlu: 0.791 ± 0.459
3.165LeuPhe: 3.165 ± 1.493
6.329LeuGly: 6.329 ± 1.616
0.0LeuHis: 0.0 ± 0.0
3.956LeuIle: 3.956 ± 1.626
4.747LeuLys: 4.747 ± 1.924
5.538LeuLeu: 5.538 ± 1.504
3.956LeuMet: 3.956 ± 1.877
5.538LeuAsn: 5.538 ± 1.053
7.911LeuPro: 7.911 ± 2.22
3.956LeuGln: 3.956 ± 1.326
3.165LeuArg: 3.165 ± 1.397
3.165LeuSer: 3.165 ± 1.321
3.956LeuThr: 3.956 ± 1.949
4.747LeuVal: 4.747 ± 1.101
0.0LeuTrp: 0.0 ± 0.0
3.165LeuTyr: 3.165 ± 1.057
0.0LeuXaa: 0.0 ± 0.0
Met
0.791MetAla: 0.791 ± 0.74
0.791MetCys: 0.791 ± 0.459
3.956MetAsp: 3.956 ± 1.703
0.791MetGlu: 0.791 ± 0.74
1.582MetPhe: 1.582 ± 0.919
0.791MetGly: 0.791 ± 0.459
0.0MetHis: 0.0 ± 0.0
0.0MetIle: 0.0 ± 0.0
3.165MetLys: 3.165 ± 3.043
2.373MetLeu: 2.373 ± 1.194
0.0MetMet: 0.0 ± 0.0
1.582MetAsn: 1.582 ± 1.14
1.582MetPro: 1.582 ± 1.168
1.582MetGln: 1.582 ± 0.723
2.373MetArg: 2.373 ± 0.995
3.165MetSer: 3.165 ± 1.889
0.0MetThr: 0.0 ± 0.0
1.582MetVal: 1.582 ± 0.608
0.0MetTrp: 0.0 ± 0.0
0.791MetTyr: 0.791 ± 0.459
0.0MetXaa: 0.0 ± 0.0
Asn
7.911AsnAla: 7.911 ± 3.71
0.791AsnCys: 0.791 ± 0.459
0.0AsnAsp: 0.0 ± 0.0
0.0AsnGlu: 0.0 ± 0.0
1.582AsnPhe: 1.582 ± 0.723
3.956AsnGly: 3.956 ± 1.477
0.791AsnHis: 0.791 ± 0.751
0.791AsnIle: 0.791 ± 0.459
2.373AsnLys: 2.373 ± 0.924
7.911AsnLeu: 7.911 ± 1.982
0.0AsnMet: 0.0 ± 0.0
2.373AsnAsn: 2.373 ± 1.108
3.165AsnPro: 3.165 ± 0.675
4.747AsnGln: 4.747 ± 1.599
3.165AsnArg: 3.165 ± 1.646
5.538AsnSer: 5.538 ± 1.928
3.165AsnThr: 3.165 ± 1.819
3.165AsnVal: 3.165 ± 1.148
0.791AsnTrp: 0.791 ± 0.459
3.165AsnTyr: 3.165 ± 1.321
0.0AsnXaa: 0.0 ± 0.0
Pro
3.165ProAla: 3.165 ± 1.927
0.0ProCys: 0.0 ± 0.0
2.373ProAsp: 2.373 ± 1.087
1.582ProGlu: 1.582 ± 0.723
1.582ProPhe: 1.582 ± 1.334
2.373ProGly: 2.373 ± 0.784
2.373ProHis: 2.373 ± 1.642
5.538ProIle: 5.538 ± 1.723
0.791ProLys: 0.791 ± 0.459
3.956ProLeu: 3.956 ± 1.626
1.582ProMet: 1.582 ± 0.608
2.373ProAsn: 2.373 ± 0.68
0.791ProPro: 0.791 ± 0.459
4.747ProGln: 4.747 ± 2.89
1.582ProArg: 1.582 ± 0.723
2.373ProSer: 2.373 ± 0.784
3.956ProThr: 3.956 ± 2.034
3.165ProVal: 3.165 ± 1.447
2.373ProTrp: 2.373 ± 0.784
0.0ProTyr: 0.0 ± 0.0
0.0ProXaa: 0.0 ± 0.0
Gln
5.538GlnAla: 5.538 ± 2.928
0.0GlnCys: 0.0 ± 0.0
4.747GlnAsp: 4.747 ± 1.568
1.582GlnGlu: 1.582 ± 0.963
3.165GlnPhe: 3.165 ± 2.217
5.538GlnGly: 5.538 ± 1.575
0.0GlnHis: 0.0 ± 0.0
1.582GlnIle: 1.582 ± 0.919
3.956GlnLys: 3.956 ± 1.54
2.373GlnLeu: 2.373 ± 1.087
1.582GlnMet: 1.582 ± 1.48
0.791GlnAsn: 0.791 ± 0.459
1.582GlnPro: 1.582 ± 0.723
6.329GlnGln: 6.329 ± 1.281
1.582GlnArg: 1.582 ± 0.608
4.747GlnSer: 4.747 ± 1.26
7.12GlnThr: 7.12 ± 1.882
3.165GlnVal: 3.165 ± 0.838
0.791GlnTrp: 0.791 ± 0.459
1.582GlnTyr: 1.582 ± 1.14
0.0GlnXaa: 0.0 ± 0.0
Arg
8.703ArgAla: 8.703 ± 1.127
0.0ArgCys: 0.0 ± 0.0
5.538ArgAsp: 5.538 ± 0.917
1.582ArgGlu: 1.582 ± 1.098
1.582ArgPhe: 1.582 ± 2.049
1.582ArgGly: 1.582 ± 0.919
0.791ArgHis: 0.791 ± 0.459
0.791ArgIle: 0.791 ± 0.751
3.165ArgLys: 3.165 ± 1.298
4.747ArgLeu: 4.747 ± 1.103
1.582ArgMet: 1.582 ± 1.156
2.373ArgAsn: 2.373 ± 0.924
3.165ArgPro: 3.165 ± 1.057
3.165ArgGln: 3.165 ± 0.795
3.165ArgArg: 3.165 ± 1.298
3.956ArgSer: 3.956 ± 1.138
3.165ArgThr: 3.165 ± 1.889
3.165ArgVal: 3.165 ± 1.666
0.791ArgTrp: 0.791 ± 0.459
4.747ArgTyr: 4.747 ± 2.17
0.0ArgXaa: 0.0 ± 0.0
Ser
11.867SerAla: 11.867 ± 2.272
0.0SerCys: 0.0 ± 0.0
5.538SerAsp: 5.538 ± 2.633
3.956SerGlu: 3.956 ± 2.177
3.956SerPhe: 3.956 ± 1.018
4.747SerGly: 4.747 ± 0.801
0.791SerHis: 0.791 ± 0.459
2.373SerIle: 2.373 ± 1.378
5.538SerLys: 5.538 ± 2.0
2.373SerLeu: 2.373 ± 1.108
0.791SerMet: 0.791 ± 0.858
4.747SerAsn: 4.747 ± 1.645
6.329SerPro: 6.329 ± 1.616
3.956SerGln: 3.956 ± 1.54
3.165SerArg: 3.165 ± 1.298
3.956SerSer: 3.956 ± 1.904
4.747SerThr: 4.747 ± 1.97
8.703SerVal: 8.703 ± 1.592
0.0SerTrp: 0.0 ± 0.0
0.791SerTyr: 0.791 ± 0.459
0.0SerXaa: 0.0 ± 0.0
Thr
4.747ThrAla: 4.747 ± 1.713
0.0ThrCys: 0.0 ± 0.0
3.165ThrAsp: 3.165 ± 1.442
6.329ThrGlu: 6.329 ± 4.065
2.373ThrPhe: 2.373 ± 1.378
6.329ThrGly: 6.329 ± 1.344
0.0ThrHis: 0.0 ± 0.0
3.165ThrIle: 3.165 ± 1.269
0.0ThrLys: 0.0 ± 0.0
5.538ThrLeu: 5.538 ± 2.412
0.791ThrMet: 0.791 ± 0.459
2.373ThrAsn: 2.373 ± 1.274
3.165ThrPro: 3.165 ± 1.397
3.956ThrGln: 3.956 ± 1.229
3.956ThrArg: 3.956 ± 1.05
7.911ThrSer: 7.911 ± 2.254
3.165ThrThr: 3.165 ± 1.132
5.538ThrVal: 5.538 ± 1.214
0.0ThrTrp: 0.0 ± 0.0
3.165ThrTyr: 3.165 ± 1.307
0.0ThrXaa: 0.0 ± 0.0
Val
5.538ValAla: 5.538 ± 1.88
0.0ValCys: 0.0 ± 0.0
3.165ValAsp: 3.165 ± 1.148
0.791ValGlu: 0.791 ± 0.459
3.165ValPhe: 3.165 ± 1.193
6.329ValGly: 6.329 ± 2.264
0.0ValHis: 0.0 ± 0.0
3.956ValIle: 3.956 ± 1.352
2.373ValLys: 2.373 ± 0.924
5.538ValLeu: 5.538 ± 1.883
1.582ValMet: 1.582 ± 0.963
2.373ValAsn: 2.373 ± 1.194
7.911ValPro: 7.911 ± 1.384
1.582ValGln: 1.582 ± 1.14
6.329ValArg: 6.329 ± 1.999
8.703ValSer: 8.703 ± 1.162
5.538ValThr: 5.538 ± 1.909
3.165ValVal: 3.165 ± 1.148
0.791ValTrp: 0.791 ± 0.459
0.0ValTyr: 0.0 ± 0.0
0.0ValXaa: 0.0 ± 0.0
Trp
1.582TrpAla: 1.582 ± 0.723
0.0TrpCys: 0.0 ± 0.0
0.0TrpAsp: 0.0 ± 0.0
0.0TrpGlu: 0.0 ± 0.0
1.582TrpPhe: 1.582 ± 0.723
0.0TrpGly: 0.0 ± 0.0
0.791TrpHis: 0.791 ± 0.459
0.0TrpIle: 0.0 ± 0.0
0.791TrpLys: 0.791 ± 0.74
0.0TrpLeu: 0.0 ± 0.0
0.0TrpMet: 0.0 ± 0.0
0.791TrpAsn: 0.791 ± 0.459
0.791TrpPro: 0.791 ± 0.459
0.0TrpGln: 0.0 ± 0.0
0.0TrpArg: 0.0 ± 0.0
0.791TrpSer: 0.791 ± 0.459
0.0TrpThr: 0.0 ± 0.0
1.582TrpVal: 1.582 ± 0.608
0.0TrpTrp: 0.0 ± 0.0
0.0TrpTyr: 0.0 ± 0.0
0.0TrpXaa: 0.0 ± 0.0
Tyr
1.582TyrAla: 1.582 ± 0.919
0.0TyrCys: 0.0 ± 0.0
3.165TyrAsp: 3.165 ± 1.321
0.791TyrGlu: 0.791 ± 0.751
3.956TyrPhe: 3.956 ± 1.713
0.791TyrGly: 0.791 ± 0.751
0.0TyrHis: 0.0 ± 0.0
3.956TyrIle: 3.956 ± 2.229
1.582TyrLys: 1.582 ± 0.944
4.747TyrLeu: 4.747 ± 2.256
0.0TyrMet: 0.0 ± 0.0
2.373TyrAsn: 2.373 ± 1.378
0.0TyrPro: 0.0 ± 0.0
3.956TyrGln: 3.956 ± 1.127
2.373TyrArg: 2.373 ± 1.274
3.165TyrSer: 3.165 ± 1.307
1.582TyrThr: 1.582 ± 0.919
3.956TyrVal: 3.956 ± 0.933
0.0TyrTrp: 0.0 ± 0.0
0.791TyrTyr: 0.791 ± 0.751
0.0TyrXaa: 0.0 ± 0.0
Xaa
0.0XaaAla: 0.0 ± 0.0
0.0XaaCys: 0.0 ± 0.0
0.0XaaAsp: 0.0 ± 0.0
0.0XaaGlu: 0.0 ± 0.0
0.0XaaPhe: 0.0 ± 0.0
0.0XaaGly: 0.0 ± 0.0
0.0XaaHis: 0.0 ± 0.0
0.0XaaIle: 0.0 ± 0.0
0.0XaaLys: 0.0 ± 0.0
0.0XaaLeu: 0.0 ± 0.0
0.0XaaMet: 0.0 ± 0.0
0.0XaaAsn: 0.0 ± 0.0
0.0XaaPro: 0.0 ± 0.0
0.0XaaGln: 0.0 ± 0.0
0.0XaaArg: 0.0 ± 0.0
0.0XaaSer: 0.0 ± 0.0
0.0XaaThr: 0.0 ± 0.0
0.0XaaVal: 0.0 ± 0.0
0.0XaaTrp: 0.0 ± 0.0
0.0XaaTyr: 0.0 ± 0.0
0.0XaaXaa: 0.0 ± 0.0
Statistics based on 5 proteins (1265 amino acids)

Note: The error has been estimated with the bootstraping (x100) at the protein level

Above dipeptide statistics (among other stats for this proteome) you can download from this CSV file
See this proteome in: uniprot_link
Proteome-pI is available under Creative Commons Attribution-NoDerivs license, for more details see here

Reference: Kozlowski LP. Proteome-pI 2.0: Proteome Isoelectric Point Database Update. Nucleic Acids Res. 2021, doi: 10.1093/nar/gkab944 Contact: Lukasz P. Kozlowski